JP2011512160A - ポリオーマウイルスの検出 - Google Patents
ポリオーマウイルスの検出 Download PDFInfo
- Publication number
- JP2011512160A JP2011512160A JP2010547632A JP2010547632A JP2011512160A JP 2011512160 A JP2011512160 A JP 2011512160A JP 2010547632 A JP2010547632 A JP 2010547632A JP 2010547632 A JP2010547632 A JP 2010547632A JP 2011512160 A JP2011512160 A JP 2011512160A
- Authority
- JP
- Japan
- Prior art keywords
- seq
- amplification
- polyomavirus
- step comprises
- testing
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
- 241001505332 Polyomavirus sp. Species 0.000 title claims abstract description 28
- 238000001514 detection method Methods 0.000 title description 9
- 238000000034 method Methods 0.000 claims abstract description 88
- 238000012360 testing method Methods 0.000 claims abstract description 47
- 150000007523 nucleic acids Chemical class 0.000 claims abstract description 41
- 108020004707 nucleic acids Proteins 0.000 claims abstract description 39
- 102000039446 nucleic acids Human genes 0.000 claims abstract description 39
- 230000000295 complement effect Effects 0.000 claims abstract description 18
- 239000000523 sample Substances 0.000 claims description 116
- 108020004414 DNA Proteins 0.000 claims description 99
- 230000003321 amplification Effects 0.000 claims description 68
- 238000003199 nucleic acid amplification method Methods 0.000 claims description 68
- 108020005187 Oligonucleotide Probes Proteins 0.000 claims description 34
- 239000002751 oligonucleotide probe Substances 0.000 claims description 34
- FWMNVWWHGCHHJJ-SKKKGAJSSA-N 4-amino-1-[(2r)-6-amino-2-[[(2r)-2-[[(2r)-2-[[(2r)-2-amino-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]piperidine-4-carboxylic acid Chemical compound C([C@H](C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCCN)C(=O)N1CCC(N)(CC1)C(O)=O)NC(=O)[C@H](N)CC=1C=CC=CC=1)C1=CC=CC=C1 FWMNVWWHGCHHJJ-SKKKGAJSSA-N 0.000 claims description 29
- 102000053602 DNA Human genes 0.000 claims description 7
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- 230000003612 virological effect Effects 0.000 claims description 6
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- ANRHNWWPFJCPAZ-UHFFFAOYSA-M thionine Chemical compound [Cl-].C1=CC(N)=CC2=[S+]C3=CC(N)=CC=C3N=C21 ANRHNWWPFJCPAZ-UHFFFAOYSA-M 0.000 claims description 5
- 239000003443 antiviral agent Substances 0.000 claims description 3
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- VWFCHDSQECPREK-LURJTMIESA-N Cidofovir Chemical compound NC=1C=CN(C[C@@H](CO)OCP(O)(O)=O)C(=O)N=1 VWFCHDSQECPREK-LURJTMIESA-N 0.000 claims description 2
- 108060003951 Immunoglobulin Proteins 0.000 claims description 2
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- 229960000681 leflunomide Drugs 0.000 claims description 2
- LISFMEBWQUVKPJ-UHFFFAOYSA-N quinolin-2-ol Chemical compound C1=CC=C2NC(=O)C=CC2=C1 LISFMEBWQUVKPJ-UHFFFAOYSA-N 0.000 claims description 2
- 210000002216 heart Anatomy 0.000 claims 1
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- 241000829111 Human polyomavirus 1 Species 0.000 description 81
- 241000701460 JC polyomavirus Species 0.000 description 59
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- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 description 2
- BZTDTCNHAFUJOG-UHFFFAOYSA-N 6-carboxyfluorescein Chemical compound C12=CC=C(O)C=C2OC2=CC(O)=CC=C2C11OC(=O)C2=CC=C(C(=O)O)C=C21 BZTDTCNHAFUJOG-UHFFFAOYSA-N 0.000 description 2
- 101710132601 Capsid protein Proteins 0.000 description 2
- 101710197658 Capsid protein VP1 Proteins 0.000 description 2
- 101710081079 Minor spike protein H Proteins 0.000 description 2
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- 101710118046 RNA-directed RNA polymerase Proteins 0.000 description 2
- 101150024766 VP1 gene Proteins 0.000 description 2
- 101710108545 Viral protein 1 Proteins 0.000 description 2
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- WCKQPPQRFNHPRJ-UHFFFAOYSA-N 4-[[4-(dimethylamino)phenyl]diazenyl]benzoic acid Chemical compound C1=CC(N(C)C)=CC=C1N=NC1=CC=C(C(O)=O)C=C1 WCKQPPQRFNHPRJ-UHFFFAOYSA-N 0.000 description 1
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- 108010014303 DNA-directed DNA polymerase Proteins 0.000 description 1
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- 206010061598 Immunodeficiency Diseases 0.000 description 1
- 238000007397 LAMP assay Methods 0.000 description 1
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- 108020004682 Single-Stranded DNA Proteins 0.000 description 1
- 208000012931 Urologic disease Diseases 0.000 description 1
- 206010058874 Viraemia Diseases 0.000 description 1
- ULHRKLSNHXXJLO-UHFFFAOYSA-L Yo-Pro-1 Chemical compound [I-].[I-].C1=CC=C2C(C=C3N(C4=CC=CC=C4O3)C)=CC=[N+](CCC[N+](C)(C)C)C2=C1 ULHRKLSNHXXJLO-UHFFFAOYSA-L 0.000 description 1
- 239000002253 acid Substances 0.000 description 1
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- 150000001413 amino acids Chemical class 0.000 description 1
- 238000004458 analytical method Methods 0.000 description 1
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- 210000003719 b-lymphocyte Anatomy 0.000 description 1
- 239000011324 bead Substances 0.000 description 1
- 239000011230 binding agent Substances 0.000 description 1
- 229960002685 biotin Drugs 0.000 description 1
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- 239000011616 biotin Substances 0.000 description 1
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- 239000012530 fluid Substances 0.000 description 1
- 238000002866 fluorescence resonance energy transfer Methods 0.000 description 1
- PCHJSUWPFVWCPO-UHFFFAOYSA-N gold Chemical compound [Au] PCHJSUWPFVWCPO-UHFFFAOYSA-N 0.000 description 1
- 239000010931 gold Substances 0.000 description 1
- 229910052737 gold Inorganic materials 0.000 description 1
- 238000010438 heat treatment Methods 0.000 description 1
- 201000002802 hemorrhagic cystitis Diseases 0.000 description 1
- 230000007062 hydrolysis Effects 0.000 description 1
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- 210000000987 immune system Anatomy 0.000 description 1
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- 238000002955 isolation Methods 0.000 description 1
- 238000007834 ligase chain reaction Methods 0.000 description 1
- 238000005259 measurement Methods 0.000 description 1
- 239000012528 membrane Substances 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 238000010369 molecular cloning Methods 0.000 description 1
- 238000007899 nucleic acid hybridization Methods 0.000 description 1
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 1
- 239000010452 phosphate Substances 0.000 description 1
- 206010036807 progressive multifocal leukoencephalopathy Diseases 0.000 description 1
- 238000003908 quality control method Methods 0.000 description 1
- 238000010791 quenching Methods 0.000 description 1
- 230000000171 quenching effect Effects 0.000 description 1
- 238000003753 real-time PCR Methods 0.000 description 1
- 238000011897 real-time detection Methods 0.000 description 1
- 210000005084 renal tissue Anatomy 0.000 description 1
- 230000010076 replication Effects 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- PYWVYCXTNDRMGF-UHFFFAOYSA-N rhodamine B Chemical compound [Cl-].C=12C=CC(=[N+](CC)CC)C=C2OC2=CC(N(CC)CC)=CC=C2C=1C1=CC=CC=C1C(O)=O PYWVYCXTNDRMGF-UHFFFAOYSA-N 0.000 description 1
- 150000003839 salts Chemical class 0.000 description 1
- 238000001963 scanning near-field photolithography Methods 0.000 description 1
- 230000000405 serological effect Effects 0.000 description 1
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- 208000014001 urinary system disease Diseases 0.000 description 1
- 230000029812 viral genome replication Effects 0.000 description 1
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
- C12Q1/701—Specific hybridization probes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
- C12R2001/00—Microorganisms ; Processes using microorganisms
- C12R2001/91—Cell lines ; Processes using cell lines
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Engineering & Computer Science (AREA)
- Immunology (AREA)
- Analytical Chemistry (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Virology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US6416608P | 2008-02-20 | 2008-02-20 | |
| PCT/US2009/001032 WO2009105212A2 (en) | 2008-02-20 | 2009-02-19 | Detection of polyomavirus |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| JP2011512160A true JP2011512160A (ja) | 2011-04-21 |
| JP2011512160A5 JP2011512160A5 (enExample) | 2013-03-21 |
Family
ID=40986099
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2010547632A Pending JP2011512160A (ja) | 2008-02-20 | 2009-02-19 | ポリオーマウイルスの検出 |
Country Status (5)
| Country | Link |
|---|---|
| US (1) | US20110091866A1 (enExample) |
| JP (1) | JP2011512160A (enExample) |
| KR (1) | KR20110011600A (enExample) |
| CN (1) | CN102066580A (enExample) |
| WO (1) | WO2009105212A2 (enExample) |
Cited By (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2020501600A (ja) * | 2016-11-09 | 2020-01-23 | エフ.ホフマン−ラ ロシュ アーゲーF. Hoffmann−La Roche Aktiengesellschaft | Bkウイルスの検出のための組成物および方法 |
| JP2022508954A (ja) * | 2018-10-22 | 2022-01-19 | ジェン-プローブ・インコーポレーテッド | ヒトポリオーマウイルスbkウイルスを増幅、検出または定量化するための組成物および方法 |
Families Citing this family (12)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2012143427A1 (en) * | 2011-04-19 | 2012-10-26 | Santaris Pharma A/S | Anti polyomavirus compounds |
| CN102690894B (zh) * | 2011-06-08 | 2013-05-01 | 中国人民解放军第三〇九医院 | 一种bk病毒的检测方法、其试剂盒及应用 |
| AU2012284122B2 (en) | 2011-07-18 | 2017-06-01 | The United States Of America, As Represented By The Secretary, Department Of Health And Human Services | Methods and compositions for inhibiting polyomavirus-associated pathology |
| CN102690895B (zh) * | 2011-07-27 | 2013-05-01 | 中国人民解放军第三〇九医院 | 一种jc病毒的检测试剂盒及应用 |
| EP2888366A4 (en) * | 2012-08-22 | 2016-03-30 | Univ California | NEW POLYMAVIRUS ASSOCIATED WITH DIARRHOE IN CHILDREN |
| CN104745723A (zh) * | 2015-01-30 | 2015-07-01 | 湖北永邦医疗科技有限公司 | 一种用于检测bk病毒的引物、探针和试剂盒 |
| CN106065420A (zh) * | 2016-07-29 | 2016-11-02 | 北京思尔成生物技术有限公司 | Bk病毒的检测方法、试剂盒及其应用 |
| FR3082524B1 (fr) * | 2018-06-18 | 2022-03-25 | Univ Paris Sud | Methode de stratification du risque de nephropathie a bk-virus apres transplantation renale |
| KR20210047716A (ko) | 2019-10-22 | 2021-04-30 | 단국대학교 천안캠퍼스 산학협력단 | Jc 바이러스를 검출하기 위한 등온증폭 반응용 프라이머 세트 및 이의 용도 |
| CN112522440A (zh) * | 2020-11-13 | 2021-03-19 | 苏州奥根诊断科技有限公司 | 同时检测bk病毒和jc病毒的引物组和探针组及用途 |
| CN113999937B (zh) * | 2021-11-04 | 2024-07-26 | 领致生物科技(昆山)有限公司 | 一种检测bk病毒和jc病毒的试剂及应用 |
| CN115216563A (zh) * | 2022-06-20 | 2022-10-21 | 广东永诺医疗科技有限公司 | 一种用于检测jc病毒的引物、探针及试剂盒 |
Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6605602B1 (en) * | 2001-09-28 | 2003-08-12 | University Of Pittsburgh-Of The Commonwealth System Of Higher Education | Method of treating BK virus nephropathy |
| WO2007016275A2 (en) * | 2005-08-02 | 2007-02-08 | Focus Diagnostics, Inc. | Methods and compositions for detecting bk virus |
Family Cites Families (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4683195A (en) * | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
| US4683202A (en) * | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
| US5210015A (en) * | 1990-08-06 | 1993-05-11 | Hoffman-La Roche Inc. | Homogeneous assay system using the nuclease activity of a nucleic acid polymerase |
| US20060205040A1 (en) * | 2005-03-03 | 2006-09-14 | Rangarajan Sampath | Compositions for use in identification of adventitious viruses |
-
2009
- 2009-02-19 US US12/918,055 patent/US20110091866A1/en not_active Abandoned
- 2009-02-19 JP JP2010547632A patent/JP2011512160A/ja active Pending
- 2009-02-19 WO PCT/US2009/001032 patent/WO2009105212A2/en not_active Ceased
- 2009-02-19 CN CN2009801129619A patent/CN102066580A/zh active Pending
- 2009-02-19 KR KR1020107020518A patent/KR20110011600A/ko not_active Withdrawn
Patent Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6605602B1 (en) * | 2001-09-28 | 2003-08-12 | University Of Pittsburgh-Of The Commonwealth System Of Higher Education | Method of treating BK virus nephropathy |
| WO2007016275A2 (en) * | 2005-08-02 | 2007-02-08 | Focus Diagnostics, Inc. | Methods and compositions for detecting bk virus |
Non-Patent Citations (3)
| Title |
|---|
| JPN6013053275; Journal of Clinical Virology Vol.36, 2006, p.159-162 * |
| JPN6013053276; GenBank[online] Accession No.NC_001538.1, 20071204 * |
| JPN6013053279; Journal of Virological Methods Vol.135, 2006, p.207-213 * |
Cited By (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2020501600A (ja) * | 2016-11-09 | 2020-01-23 | エフ.ホフマン−ラ ロシュ アーゲーF. Hoffmann−La Roche Aktiengesellschaft | Bkウイルスの検出のための組成物および方法 |
| JP2022508954A (ja) * | 2018-10-22 | 2022-01-19 | ジェン-プローブ・インコーポレーテッド | ヒトポリオーマウイルスbkウイルスを増幅、検出または定量化するための組成物および方法 |
| JP7542546B2 (ja) | 2018-10-22 | 2024-08-30 | ジェン-プローブ・インコーポレーテッド | ヒトポリオーマウイルスbkウイルスを増幅、検出または定量化するための組成物および方法 |
Also Published As
| Publication number | Publication date |
|---|---|
| US20110091866A1 (en) | 2011-04-21 |
| WO2009105212A3 (en) | 2010-04-22 |
| WO2009105212A2 (en) | 2009-08-27 |
| CN102066580A (zh) | 2011-05-18 |
| KR20110011600A (ko) | 2011-02-08 |
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