JP2008536488A - 遺伝子発現署名を使用する、癌による死亡および前立腺癌生存率を予測するための方法および組成物 - Google Patents

遺伝子発現署名を使用する、癌による死亡および前立腺癌生存率を予測するための方法および組成物 Download PDF

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JP2008536488A
JP2008536488A JP2008502127A JP2008502127A JP2008536488A JP 2008536488 A JP2008536488 A JP 2008536488A JP 2008502127 A JP2008502127 A JP 2008502127A JP 2008502127 A JP2008502127 A JP 2008502127A JP 2008536488 A JP2008536488 A JP 2008536488A
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ジェナディ ブイ. グリンクシー,
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シドニー キンメル キャンサー センター
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    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
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JP2008502127A 2005-03-16 2006-03-16 遺伝子発現署名を使用する、癌による死亡および前立腺癌生存率を予測するための方法および組成物 Pending JP2008536488A (ja)

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US66301405P 2005-03-16 2005-03-16
PCT/US2006/009870 WO2006110264A2 (en) 2005-03-16 2006-03-16 Methods and compositions for predicting death from cancer and prostate cancer survival using gene expression signatures

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JP2009061926A Pending JP2009131278A (ja) 2005-03-16 2009-03-13 遺伝子発現署名を使用する、癌による死亡および前立腺癌生存率を予測するための方法および組成物

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Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2010131006A (ja) * 2008-10-31 2010-06-17 Dna Chip Research Inc 神経膠腫予後予測方法、およびそれに用いるキット
JP2012527679A (ja) * 2009-05-20 2012-11-08 コーニンクレッカ フィリップス エレクトロニクス エヌ ヴィ 分子署名に基づくバイオマーカ
CN108474040A (zh) * 2015-10-09 2018-08-31 夸登特健康公司 使用无细胞dna的基于群体的治疗推荐

Families Citing this family (38)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20130122504A1 (en) * 2011-11-14 2013-05-16 Lars Dyrskjot Andersen Expression Levels of COL4A3BP and other Markers Correlating with Progression or Non-Progression of Bladder Cancer
JP5150855B2 (ja) * 2005-07-29 2013-02-27 オンコセラピー・サイエンス株式会社 Cdca1−kntc2複合体を標的とするスクリーニングおよびnsclcの治療方法
US8768629B2 (en) * 2009-02-11 2014-07-01 Caris Mpi, Inc. Molecular profiling of tumors
BRPI0711011A2 (pt) 2006-05-18 2011-08-23 Molecular Profiling Inst Inc método para a determinação da intervenção médica para um estado de doença, método para a identificação de uma terapia de droga com capacidade de interação com um alvo molecular e sistema para a determinação da intervenção médica individualizada para um estado de doença
WO2008058018A2 (en) 2006-11-02 2008-05-15 Mayo Foundation For Medical Education And Research Predicting cancer outcome
DE102007044919A1 (de) * 2007-09-19 2009-04-02 Hefter, Harald, Prof. Dr. med. Dr. rer. nat. Verfahren zur Bestimmung von sekundärem Therapieversagen
JP5407018B2 (ja) * 2007-12-28 2014-02-05 国立大学法人名古屋大学 肺腺癌患者の術後再発を予測するための方法及び組成物
EP2806054A1 (en) * 2008-05-28 2014-11-26 Genomedx Biosciences Inc. Systems and methods for expression-based discrimination of distinct clinical disease states in prostate cancer
US10407731B2 (en) 2008-05-30 2019-09-10 Mayo Foundation For Medical Education And Research Biomarker panels for predicting prostate cancer outcomes
US8227202B2 (en) 2008-07-10 2012-07-24 Nodality, Inc. Methods for diagnosis, prognosis and methods of treatment
EP3075864A1 (en) * 2008-10-14 2016-10-05 Caris MPI, Inc. Gene and gene expressed protein targets depicting biomarker patterns and signature sets by tumor type
EP3181705A1 (en) * 2008-11-12 2017-06-21 Caris Life Sciences Switzerland Holdings GmbH Methods and systems of using exosomes for determining phenotypes
CN103237901B (zh) 2010-03-01 2016-08-03 卡里斯生命科学瑞士控股有限责任公司 用于治疗诊断的生物标志物
CA2795776A1 (en) 2010-04-06 2011-10-13 Caris Life Sciences Luxembourg Holdings, S.A.R.L. Circulating biomarkers for disease
MX338883B (es) * 2010-07-27 2016-05-04 Genomic Health Inc Metodo para usar expresion de gen para determinar el pronostico de cancer de prostata.
US20130267443A1 (en) 2010-11-19 2013-10-10 The Regents Of The University Of Michigan ncRNA AND USES THEREOF
CA2856981A1 (en) * 2011-11-23 2013-06-27 Uti Limited Partnership Expression signature for staging and prognosis of prostate, breast and leukemia cancers
WO2013090620A1 (en) 2011-12-13 2013-06-20 Genomedx Biosciences, Inc. Cancer diagnostics using non-coding transcripts
SG11201404390WA (en) 2012-01-31 2014-08-28 Genomic Health Inc Gene expression profile algorithm and test for determining prognosis of prostate cancer
ES2945036T3 (es) * 2012-08-16 2023-06-28 Veracyte Sd Inc Pronóstico del cáncer de próstata mediante biomarcadores
WO2014028907A1 (en) 2012-08-16 2014-02-20 The Trustees Of Columbia University In The City Of New York Diagnostic markers of indolent prostate cancer
KR101993716B1 (ko) * 2012-09-28 2019-06-27 삼성전자주식회사 카테고리별 진단 모델을 이용한 병변 진단 장치 및 방법
US9687290B2 (en) 2012-10-02 2017-06-27 Covidien Lp Energy-based medical devices
TWI658049B (zh) * 2013-03-12 2019-05-01 腫瘤療法 科學股份有限公司 Kntc2胜肽及含此胜肽之疫苗
US20160040212A1 (en) * 2013-03-15 2016-02-11 The Broad Institute, Inc. Methods for the Detection of DNA-RNA Proximity in Vivo
CN110444289A (zh) * 2013-06-28 2019-11-12 南托米克斯有限责任公司 用于诊断检测的识别的途径分析
ES2923942T3 (es) 2013-11-06 2022-10-03 Us Health Procedimiento para el subtipado de tipos de linfoma por medio de perfiles de expresión
GB201322034D0 (en) 2013-12-12 2014-01-29 Almac Diagnostics Ltd Prostate cancer classification
FR3017955B1 (fr) * 2014-02-27 2018-04-06 Assistance Publique - Hopitaux De Paris Biomarqueurs diagnostics de la cardiomyopathie du peripartum
WO2016036878A1 (en) * 2014-09-02 2016-03-10 Nodality, Inc. Methods for diagnosis, prognosis and methods of treatment
TWI582240B (zh) * 2015-05-19 2017-05-11 鄭鴻鈞 以基因體預後評估試劑組預測乳癌患者局部區域復發風險及放射治療有效性的方法、用途及裝置
WO2017184861A1 (en) 2016-04-20 2017-10-26 The United States Of America, As Represented By The Secretary, Department Of Health And Human Services Evaluation of mantle cell lymphoma and methods related thereto
JP6963009B2 (ja) 2016-05-19 2021-11-05 オンコスカー エルエルシーOncoscar Llc 臨床的に難治性の悪性腫瘍の診断及び治療標的化の方法
US11414708B2 (en) 2016-08-24 2022-08-16 Decipher Biosciences, Inc. Use of genomic signatures to predict responsiveness of patients with prostate cancer to post-operative radiation therapy
AU2018210695B2 (en) 2017-01-20 2024-07-18 The University Of British Columbia Molecular subtyping, prognosis, and treatment of bladder cancer
US11873532B2 (en) 2017-03-09 2024-01-16 Decipher Biosciences, Inc. Subtyping prostate cancer to predict response to hormone therapy
WO2018205035A1 (en) 2017-05-12 2018-11-15 Genomedx Biosciences, Inc Genetic signatures to predict prostate cancer metastasis and identify tumor agressiveness
EP3715476A1 (en) * 2019-03-29 2020-09-30 Centre National De La Recherche Scientifique Prognosis method of cancer

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2004025258A2 (en) * 2002-09-10 2004-03-25 Sydney Kimmel Cancer Center Gene segregation and biological sample classification methods
US20050208500A1 (en) * 2003-03-04 2005-09-22 Erlander Mark G Signatures of ER status in breast cancer

Family Cites Families (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6218122B1 (en) * 1998-06-19 2001-04-17 Rosetta Inpharmatics, Inc. Methods of monitoring disease states and therapies using gene expression profiles
US6203987B1 (en) * 1998-10-27 2001-03-20 Rosetta Inpharmatics, Inc. Methods for using co-regulated genesets to enhance detection and classification of gene expression patterns
NL1014106C2 (nl) 2000-01-18 2001-07-20 Univ Amsterdam Werkwijze voor het detecteren van een pathologische afwijking bij een cel, een antistof en een assay kit.
DK1410011T3 (da) * 2001-06-18 2011-07-18 Netherlands Cancer Inst Diagnose og prognose for brystcancerpatienter
AU2002358279A1 (en) 2001-12-21 2003-07-30 Arcturus Engineering, Inc. Biomarkers for breast cancer
US8065093B2 (en) * 2004-10-06 2011-11-22 Agency For Science, Technology, And Research Methods, systems, and compositions for classification, prognosis, and diagnosis of cancers
WO2006060646A2 (en) * 2004-12-03 2006-06-08 Board Of Regents, The University Of Texas System Cell microarray for profiling of cellular phenotypes and gene function
US20090098538A1 (en) * 2006-03-31 2009-04-16 Glinsky Gennadi V Prognostic and diagnostic method for disease therapy
CA2648021A1 (en) * 2006-03-31 2007-10-11 Ordway Research Institute, Inc. Prognostic and diagnostic method for cancer therapy

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2004025258A2 (en) * 2002-09-10 2004-03-25 Sydney Kimmel Cancer Center Gene segregation and biological sample classification methods
US20050208500A1 (en) * 2003-03-04 2005-09-22 Erlander Mark G Signatures of ER status in breast cancer

Cited By (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2010131006A (ja) * 2008-10-31 2010-06-17 Dna Chip Research Inc 神経膠腫予後予測方法、およびそれに用いるキット
JP2012527679A (ja) * 2009-05-20 2012-11-08 コーニンクレッカ フィリップス エレクトロニクス エヌ ヴィ 分子署名に基づくバイオマーカ
US11348662B2 (en) 2009-05-20 2022-05-31 Koninklijke Philips N.V. Biomarkers based on sets of molecular signatures
CN108474040A (zh) * 2015-10-09 2018-08-31 夸登特健康公司 使用无细胞dna的基于群体的治疗推荐
JP2018537754A (ja) * 2015-10-09 2018-12-20 ガーダント ヘルス, インコーポレイテッド 無細胞dnaを使用する集団ベースの処置レコメンダ
JP6991134B2 (ja) 2015-10-09 2022-01-12 ガーダント ヘルス, インコーポレイテッド 無細胞dnaを使用する集団ベースの処置レコメンダ
JP2024167909A (ja) * 2015-10-09 2024-12-04 ガーダント ヘルス, インコーポレイテッド 無細胞dnaを使用する集団ベースの処置レコメンダ

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US20090233279A1 (en) 2009-09-17
EP1874471A4 (en) 2008-12-10
WO2006110264A2 (en) 2006-10-19
AU2006234897A1 (en) 2006-10-19
JP2009131278A (ja) 2009-06-18
EP1874471A2 (en) 2008-01-09
WO2006110264A3 (en) 2007-03-01
US8349555B2 (en) 2013-01-08

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