GB2496019B - Systems and methods for manipulating a molecule in a nanopore - Google Patents
Systems and methods for manipulating a molecule in a nanoporeInfo
- Publication number
- GB2496019B GB2496019B GB1216656.7A GB201216656A GB2496019B GB 2496019 B GB2496019 B GB 2496019B GB 201216656 A GB201216656 A GB 201216656A GB 2496019 B GB2496019 B GB 2496019B
- Authority
- GB
- United Kingdom
- Prior art keywords
- nanopore
- manipulating
- molecule
- systems
- methods
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/483—Physical analysis of biological material
- G01N33/487—Physical analysis of biological material of liquid biological material
- G01N33/48707—Physical analysis of biological material of liquid biological material by electrical means
- G01N33/48721—Investigating individual macromolecules, e.g. by translocation through nanopores
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Physics & Mathematics (AREA)
- Biomedical Technology (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- Immunology (AREA)
- General Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Hematology (AREA)
- Nanotechnology (AREA)
- Urology & Nephrology (AREA)
- Pathology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Food Science & Technology (AREA)
- Medicinal Chemistry (AREA)
- General Physics & Mathematics (AREA)
- Microbiology (AREA)
- Biotechnology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Investigating Or Analyzing Materials By The Use Of Electric Means (AREA)
Applications Claiming Priority (6)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US12/658,591 US9605307B2 (en) | 2010-02-08 | 2010-02-08 | Systems and methods for forming a nanopore in a lipid bilayer |
| US12/658,601 US20110192723A1 (en) | 2010-02-08 | 2010-02-08 | Systems and methods for manipulating a molecule in a nanopore |
| US12/658,603 US20110287414A1 (en) | 2010-02-08 | 2010-02-08 | Systems and methods for identifying a portion of a molecule |
| US12/658,602 US20120052188A1 (en) | 2010-02-08 | 2010-02-08 | Systems and methods for assembling a lipid bilayer on a substantially planar solid surface |
| US12/658,604 US8324914B2 (en) | 2010-02-08 | 2010-02-08 | Systems and methods for characterizing a molecule |
| GB201216026A GB2490847B8 (en) | 2010-02-08 | 2011-02-04 | Systems and methods for manipulating a molecule ina nanopore |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| GB201216656D0 GB201216656D0 (en) | 2012-10-31 |
| GB2496019A GB2496019A (en) | 2013-05-01 |
| GB2496019B true GB2496019B (en) | 2014-11-12 |
Family
ID=44355716
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| GB1216656.7A Active GB2496019B (en) | 2010-02-08 | 2011-02-04 | Systems and methods for manipulating a molecule in a nanopore |
| GB201216026A Active GB2490847B8 (en) | 2010-02-08 | 2011-02-04 | Systems and methods for manipulating a molecule ina nanopore |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| GB201216026A Active GB2490847B8 (en) | 2010-02-08 | 2011-02-04 | Systems and methods for manipulating a molecule ina nanopore |
Country Status (7)
| Country | Link |
|---|---|
| EP (2) | EP2843405B8 (enExample) |
| JP (2) | JP5858931B2 (enExample) |
| CN (2) | CN105273991B (enExample) |
| AU (1) | AU2011213234B2 (enExample) |
| CA (2) | CA2995178C (enExample) |
| GB (2) | GB2496019B (enExample) |
| WO (1) | WO2011097028A1 (enExample) |
Families Citing this family (74)
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|---|---|---|---|---|
| WO2007146158A1 (en) | 2006-06-07 | 2007-12-21 | The Trustees Of Columbia University In The City Of New York | Dna sequencing by nanopore using modified nucleotides |
| US8324914B2 (en) | 2010-02-08 | 2012-12-04 | Genia Technologies, Inc. | Systems and methods for characterizing a molecule |
| US9605307B2 (en) | 2010-02-08 | 2017-03-28 | Genia Technologies, Inc. | Systems and methods for forming a nanopore in a lipid bilayer |
| US9678055B2 (en) | 2010-02-08 | 2017-06-13 | Genia Technologies, Inc. | Methods for forming a nanopore in a lipid bilayer |
| US10443096B2 (en) | 2010-12-17 | 2019-10-15 | The Trustees Of Columbia University In The City Of New York | DNA sequencing by synthesis using modified nucleotides and nanopore detection |
| GB2500360B (en) | 2010-12-22 | 2019-10-23 | Genia Tech Inc | Nanopore-based single DNA molecule characterization, identification and isolation using speed bumps |
| US8962242B2 (en) | 2011-01-24 | 2015-02-24 | Genia Technologies, Inc. | System for detecting electrical properties of a molecular complex |
| US9110478B2 (en) | 2011-01-27 | 2015-08-18 | Genia Technologies, Inc. | Temperature regulation of measurement arrays |
| WO2013067208A1 (en) | 2011-11-02 | 2013-05-10 | Genia Technologies, Inc. | Systems and methods for determining genetic data |
| EP2814983B1 (en) | 2012-02-16 | 2019-04-24 | Genia Technologies, Inc. | Methods for creating bilayers for use with nanopore sensors |
| US8986629B2 (en) | 2012-02-27 | 2015-03-24 | Genia Technologies, Inc. | Sensor circuit for controlling, detecting, and measuring a molecular complex |
| WO2013154999A2 (en) | 2012-04-09 | 2013-10-17 | The Trustees Of Columbia University In The City Of New York | Method of preparation of nanopore and uses thereof |
| GB2510719A (en) | 2012-06-15 | 2014-08-13 | Genia Technologies Inc | Chip set-up and high-accuracy nucleic acid sequencing |
| EP2864502B1 (en) | 2012-06-20 | 2019-10-23 | The Trustees of Columbia University in the City of New York | Nucleic acid sequencing by nanopore detection of tag molecules |
| US9605309B2 (en) | 2012-11-09 | 2017-03-28 | Genia Technologies, Inc. | Nucleic acid sequencing using tags |
| EP2935664A4 (en) * | 2012-12-21 | 2016-08-17 | Ibis Biosciences Inc | STABILIZED NANOPORE AND MICROPORE STRUCTURES AND METHODS OF MAKING AND USING SAME |
| US9759711B2 (en) | 2013-02-05 | 2017-09-12 | Genia Technologies, Inc. | Nanopore arrays |
| CN105102627B (zh) | 2013-03-15 | 2018-10-19 | 纽约哥伦比亚大学理事会 | 用于检测样品中多种预定化合物的方法 |
| DE102013206657A1 (de) * | 2013-04-15 | 2014-10-16 | Siemens Aktiengesellschaft | Verfahren zum Gewinnen von mindestens einem doppelsträngigen Nukleinsäure-Fragment |
| US9551697B2 (en) | 2013-10-17 | 2017-01-24 | Genia Technologies, Inc. | Non-faradaic, capacitively coupled measurement in a nanopore cell array |
| US9322062B2 (en) | 2013-10-23 | 2016-04-26 | Genia Technologies, Inc. | Process for biosensor well formation |
| CA2926138A1 (en) * | 2013-10-23 | 2015-04-30 | Genia Technologies, Inc. | High speed molecular sensing with nanopores |
| DE102013223143B4 (de) | 2013-11-13 | 2025-08-21 | Jumatech Gmbh | Leiterplatte mit wenigstens einem eingebetteten Präzisionswiderstand und Verfahren zur Herstellung einer Leiterplatte |
| US10240195B2 (en) | 2014-03-24 | 2019-03-26 | The Trustees Of Columbia University In The City Of New York | Chemical methods for producing tagged nucleotides |
| US10006899B2 (en) | 2014-03-25 | 2018-06-26 | Genia Technologies, Inc. | Nanopore-based sequencing chips using stacked wafer technology |
| WO2015175789A1 (en) | 2014-05-14 | 2015-11-19 | Mcruer Robert N | Translocation control for sensing by a nanopore |
| CA3163156C (en) * | 2014-07-31 | 2025-07-08 | Illumina Inc | HYBRID NANOPORE SENSORS |
| ES2774802T3 (es) * | 2014-10-31 | 2020-07-22 | Genia Tech Inc | Variantes de hemolisina alfa con características alteradas |
| US10060903B2 (en) * | 2014-11-05 | 2018-08-28 | Genia Technologies, Inc. | Exporting measurements of nanopore arrays |
| US9863904B2 (en) | 2014-12-19 | 2018-01-09 | Genia Technologies, Inc. | Nanopore-based sequencing with varying voltage stimulus |
| US9557294B2 (en) | 2014-12-19 | 2017-01-31 | Genia Technologies, Inc. | Nanopore-based sequencing with varying voltage stimulus |
| JP6538348B2 (ja) * | 2014-12-26 | 2019-07-03 | 株式会社東芝 | 粒子測定装置 |
| CN107110817B (zh) * | 2014-12-31 | 2019-09-24 | 卡尤迪生物科技(北京)有限公司 | 使用纳米孔和标签的核酸分子检测 |
| CN107257854B (zh) | 2015-02-02 | 2022-02-15 | 豪夫迈·罗氏有限公司 | 聚合酶变体 |
| CN104713932B (zh) * | 2015-03-24 | 2017-03-29 | 清华大学 | 一种交流模式的多参数纳米孔单分子分析仪 |
| US10526588B2 (en) | 2015-05-14 | 2020-01-07 | Roche Sequencing Solutions, Inc. | Polymerase variants and uses thereof |
| US10174371B2 (en) | 2015-08-05 | 2019-01-08 | Genia Technologies, Inc. | Use of titanium nitride as an electrode in non-faradaic electrochemical cell |
| JP6956709B2 (ja) | 2015-09-22 | 2021-11-02 | エフ.ホフマン−ラ ロシュ アーゲーF. Hoffmann−La Roche Aktiengesellschaft | Ompgバリアント |
| US10935512B2 (en) | 2015-09-24 | 2021-03-02 | Roche Sequencing Solutions, Inc. | Encoding state change of nanopore to reduce data size |
| US10126262B2 (en) | 2015-09-24 | 2018-11-13 | Genia Technologies, Inc. | Differential output of analog memories storing nanopore measurement samples |
| BR112018006843A2 (en) | 2015-10-07 | 2018-12-11 | Selma Diagnostics Aps | flow system and methods for digital counting |
| US10371664B2 (en) * | 2016-01-21 | 2019-08-06 | Roche Molecular Systems, Inc. | Use of titanium nitride as a counter electrode |
| US10438662B2 (en) | 2016-02-29 | 2019-10-08 | Iridia, Inc. | Methods, compositions, and devices for information storage |
| JP6959931B2 (ja) | 2016-02-29 | 2021-11-05 | ジェニア・テクノロジーズ・インコーポレイテッド | エキソヌクレアーゼ欠損ポリメラーゼ |
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| US10859562B2 (en) | 2016-02-29 | 2020-12-08 | Iridia, Inc. | Methods, compositions, and devices for information storage |
| US10590480B2 (en) | 2016-02-29 | 2020-03-17 | Roche Sequencing Solutions, Inc. | Polymerase variants |
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| US10465240B2 (en) | 2016-03-30 | 2019-11-05 | Roche Sequencing Solutions, Inc. | Electrical enhancement of bilayer formation |
| US10155979B2 (en) | 2016-03-30 | 2018-12-18 | Roche Molecular Systems, Inc. | Non-destructive bilayer monitoring using measurement of bilayer response to electrical stimulus |
| US10233486B2 (en) | 2016-03-30 | 2019-03-19 | Roche Sequencing Solutions, Inc. | Method for inline bilayer capacitance monitoring |
| US11124827B2 (en) * | 2016-06-23 | 2021-09-21 | Roche Sequencing Solutions, Inc. | Period-to-period analysis of AC signals from nanopore sequencing |
| JP6925051B2 (ja) | 2016-07-29 | 2021-08-25 | セルマ・ダイアグノスティクス・アンパルトセルスカブSelma Diagnostics Aps | デジタル計数のための方法の改良 |
| CN110114458A (zh) | 2016-09-22 | 2019-08-09 | 豪夫迈·罗氏有限公司 | Pol6聚合酶变体 |
| EP3526603B1 (en) * | 2016-10-12 | 2022-07-20 | F. Hoffmann-La Roche AG | Nanopore voltage methods |
| GB201619930D0 (en) * | 2016-11-24 | 2017-01-11 | Oxford Nanopore Tech | Apparatus and methods for controlling insertion of a membrane channel into a membrane |
| WO2018109102A1 (en) * | 2016-12-15 | 2018-06-21 | F. Hoffmann-La Roche Ag | Adaptive nanopore signal compression |
| KR102593484B1 (ko) * | 2017-06-29 | 2023-10-24 | 프레지던트 앤드 펠로우즈 오브 하바드 칼리지 | 나노포어를 통한 폴리머의 결정적 스텝핑 |
| CN107436317A (zh) * | 2017-07-21 | 2017-12-05 | 河南金泰生物技术股份有限公司 | 一种利用纳米通道技术检测癌症的方法 |
| CN107377020B (zh) * | 2017-08-04 | 2019-09-17 | 深圳市梅丽纳米孔科技有限公司 | 微流控芯片及基于微流控芯片的生物标记物的检测方法 |
| CN107688726B (zh) * | 2017-09-21 | 2021-09-07 | 深圳市易基因科技有限公司 | 基于液相捕获技术判定单基因病相关拷贝数缺失的方法 |
| EP3684953A1 (en) * | 2017-09-22 | 2020-07-29 | H. Hoffnabb-La Roche Ag | Measurement of double layer capacitance in a nanopore sequencing cell |
| CN111512155B (zh) | 2017-12-28 | 2022-07-05 | 豪夫迈·罗氏有限公司 | 测量和去除来自交流信号驱动的纳米孔dna测序系统的随机信号中的噪声 |
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| CN113260449B (zh) * | 2018-12-11 | 2023-09-29 | 豪夫迈·罗氏有限公司 | 用于膜中自限性蛋白质孔插入的系统和方法 |
| JP2020153996A (ja) * | 2020-05-29 | 2020-09-24 | 株式会社東芝 | 分析チップ |
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| CN112098489B (zh) * | 2020-08-19 | 2022-11-15 | 孙经纬 | 一种定量dna甲基化程度的电化学方法及系统 |
| CN112300913A (zh) * | 2020-11-11 | 2021-02-02 | 深圳市儒翰基因科技有限公司 | 一种dna测序装置、固态纳米孔阵列及其制备方法 |
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Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20050208574A1 (en) * | 2000-02-11 | 2005-09-22 | The Texas A&M University System | Biosensor compositions and methods of use |
| US20080218184A1 (en) * | 2006-05-05 | 2008-09-11 | University Of Utah Research Foundation | Nanopore platforms for ion channel recordings and single molecule detection and analysis |
| WO2008124107A1 (en) * | 2007-04-04 | 2008-10-16 | The Regents Of The University Of California | Compositions, devices, systems, and methods for using a nanopore |
| US20090029477A1 (en) * | 2004-08-13 | 2009-01-29 | President And Fellows Of Harvard College | Ultra High-Throughput Opti-Nanopore DNA Readout Platform |
| US20090136958A1 (en) * | 2007-10-02 | 2009-05-28 | President And Fellows Of Harvard College | Capture, recapture, and trapping of molecules with a nanopore |
| US20090167288A1 (en) * | 2007-12-19 | 2009-07-02 | Stuart William Reid | Formation of Layers of Amphiphilic Molecules |
| WO2011067559A1 (en) * | 2009-12-01 | 2011-06-09 | Oxford Nanopore Technologies Limited | Biochemical analysis instrument |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6913697B2 (en) * | 2001-02-14 | 2005-07-05 | Science & Technology Corporation @ Unm | Nanostructured separation and analysis devices for biological membranes |
| EP1546696B1 (en) * | 2002-09-11 | 2012-02-29 | Synamem Corporation | Membrane-based assays |
| JP2006526777A (ja) * | 2003-02-28 | 2006-11-24 | ブラウン ユニバーシティー | ナノ細孔、その使用方法、その作成方法、及びそれを使用して生体分子を特徴付ける方法 |
| US7112433B2 (en) * | 2003-04-24 | 2006-09-26 | Hewlett-Packard Development Company, L.P. | Electrical analysis of biological membranes |
| US7279337B2 (en) * | 2004-03-10 | 2007-10-09 | Agilent Technologies, Inc. | Method and apparatus for sequencing polymers through tunneling conductance variation detection |
| GB2431013B (en) * | 2004-07-23 | 2008-05-21 | Electronic Bio Sciences Llc | Method and apparatus for sensing a time varying current passing through an ion channel |
| US20060073489A1 (en) * | 2004-10-05 | 2006-04-06 | Gangqiang Li | Nanopore separation devices and methods of using same |
| US7867716B2 (en) * | 2004-12-21 | 2011-01-11 | The Texas A&M University System | High temperature ion channels and pores |
| US20060231419A1 (en) * | 2005-04-15 | 2006-10-19 | Barth Philip W | Molecular resonant tunneling sensor and methods of fabricating and using the same |
| TWI287041B (en) * | 2005-04-27 | 2007-09-21 | Jung-Tang Huang | An ultra-rapid DNA sequencing method with nano-transistors array based devices |
| US7849581B2 (en) * | 2006-05-05 | 2010-12-14 | University Of Utah Research Foundation | Nanopore electrode, nanopore membrane, methods of preparation and surface modification, and use thereof |
| GB0625070D0 (en) * | 2006-12-15 | 2007-01-24 | Imp Innovations Ltd | Characterization of molecules |
| NZ579083A (en) * | 2007-02-20 | 2012-07-27 | Oxford Nanopore Tech Ltd | Lipid bilayer sensor system |
| WO2009005547A2 (en) * | 2007-03-09 | 2009-01-08 | University Of Utah Research Foundation | Method for electrostatic trapping of molecules in nanopores |
| US20090215050A1 (en) * | 2008-02-22 | 2009-08-27 | Robert Delmar Jenison | Systems and methods for point-of-care amplification and detection of polynucleotides |
| GB0808856D0 (en) * | 2008-05-15 | 2008-06-25 | Univ Warwick | Fabricated nanopores and micropores for chemical and biochemical analysis |
-
2011
- 2011-02-04 EP EP14191378.0A patent/EP2843405B8/en active Active
- 2011-02-04 JP JP2012551978A patent/JP5858931B2/ja active Active
- 2011-02-04 CA CA2995178A patent/CA2995178C/en active Active
- 2011-02-04 CN CN201510614358.8A patent/CN105273991B/zh active Active
- 2011-02-04 EP EP11740145.5A patent/EP2534284B1/en active Active
- 2011-02-04 CA CA2788331A patent/CA2788331C/en active Active
- 2011-02-04 WO PCT/US2011/000205 patent/WO2011097028A1/en not_active Ceased
- 2011-02-04 AU AU2011213234A patent/AU2011213234B2/en active Active
- 2011-02-04 CN CN201180016647.8A patent/CN103298984B/zh active Active
- 2011-02-04 GB GB1216656.7A patent/GB2496019B/en active Active
- 2011-02-04 GB GB201216026A patent/GB2490847B8/en active Active
-
2015
- 2015-12-15 JP JP2015244065A patent/JP6124982B2/ja active Active
Patent Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20050208574A1 (en) * | 2000-02-11 | 2005-09-22 | The Texas A&M University System | Biosensor compositions and methods of use |
| US20090029477A1 (en) * | 2004-08-13 | 2009-01-29 | President And Fellows Of Harvard College | Ultra High-Throughput Opti-Nanopore DNA Readout Platform |
| US20080218184A1 (en) * | 2006-05-05 | 2008-09-11 | University Of Utah Research Foundation | Nanopore platforms for ion channel recordings and single molecule detection and analysis |
| WO2008124107A1 (en) * | 2007-04-04 | 2008-10-16 | The Regents Of The University Of California | Compositions, devices, systems, and methods for using a nanopore |
| US20090136958A1 (en) * | 2007-10-02 | 2009-05-28 | President And Fellows Of Harvard College | Capture, recapture, and trapping of molecules with a nanopore |
| US20090167288A1 (en) * | 2007-12-19 | 2009-07-02 | Stuart William Reid | Formation of Layers of Amphiphilic Molecules |
| WO2011067559A1 (en) * | 2009-12-01 | 2011-06-09 | Oxford Nanopore Technologies Limited | Biochemical analysis instrument |
Also Published As
| Publication number | Publication date |
|---|---|
| CN105273991A (zh) | 2016-01-27 |
| CN103298984A (zh) | 2013-09-11 |
| CA2995178C (en) | 2023-09-12 |
| EP2843405B8 (en) | 2023-10-04 |
| AU2011213234B2 (en) | 2015-05-14 |
| JP6124982B2 (ja) | 2017-05-10 |
| GB201216656D0 (en) | 2012-10-31 |
| JP2016095314A (ja) | 2016-05-26 |
| JP2013519088A (ja) | 2013-05-23 |
| GB2490847A8 (en) | 2014-10-22 |
| JP5858931B2 (ja) | 2016-02-10 |
| CN105273991B (zh) | 2019-05-10 |
| GB2490847A (en) | 2012-11-14 |
| AU2011213234A2 (en) | 2013-01-10 |
| CN103298984B (zh) | 2015-11-25 |
| EP2843405A2 (en) | 2015-03-04 |
| EP2534284A1 (en) | 2012-12-19 |
| GB2490847B (en) | 2014-04-23 |
| EP2843405A3 (en) | 2015-04-29 |
| AU2011213234A1 (en) | 2012-08-23 |
| GB201216026D0 (en) | 2012-10-24 |
| EP2843405B1 (en) | 2023-08-23 |
| EP2534284B1 (en) | 2021-03-17 |
| EP2534284A4 (en) | 2017-01-25 |
| GB2496019A (en) | 2013-05-01 |
| GB2490847B8 (en) | 2014-10-22 |
| WO2011097028A1 (en) | 2011-08-11 |
| CA2788331C (en) | 2018-04-03 |
| CA2995178A1 (en) | 2011-08-11 |
| CA2788331A1 (en) | 2011-08-11 |
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