EP1624056B1 - Verfahren zur Herstellung einer rekombinanten thermostabilen Lipase von Geobacillus T1 - Google Patents

Verfahren zur Herstellung einer rekombinanten thermostabilen Lipase von Geobacillus T1 Download PDF

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EP1624056B1
EP1624056B1 EP05005743A EP05005743A EP1624056B1 EP 1624056 B1 EP1624056 B1 EP 1624056B1 EP 05005743 A EP05005743 A EP 05005743A EP 05005743 A EP05005743 A EP 05005743A EP 1624056 B1 EP1624056 B1 EP 1624056B1
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lipase
geobacillus
strain
activity
gst
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EP1624056A1 (de
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Raja Noor Zaliha Rahman
Abu Bakar Salleh
Mahiran 22. Jalan LP 6/7 Basri
Leow Thean Chor
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Universiti Putra Malaysia (UPM)
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    • C12N1/00—Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/20—Bacteria; Culture media therefor
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N1/00—Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/20—Bacteria; Culture media therefor
    • C12N1/205—Bacterial isolates
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12R2001/00—Microorganisms ; Processes using microorganisms
    • C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
    • C12R2001/07—Bacillus

Definitions

  • This invention relates to a method for producing a recombinant thermostable Geobacillus T1 lipase without the signal peptide (amino acids 1 to 28) as a GST-fusion protein in a prokaryotic host strain.
  • Lipase is a very important metabolic enzyme for common biological organisms; it can hydrolyze fat to produce free fatty acid.
  • Lipases or acylglycerol hydrolases are enzymes that catalyse the hydrolysis of long chain triglyceride into diacylglyceride, monoglyceride, glycerol and free fatty acids.
  • lipases are also capable of catalyzing the reverse reaction to hydrolysis in the formation of esters from alcohols and fatty acids, or through transesterification.
  • the lipase is extensively used as an enzyme for food processing in order to flavor dairy products, as medicament for improving digestion, for improving fats and oils, and the like.
  • the lipase is required to have various characteristics, and thermostable lipase is applied in order to achieve various characteristics for each use, and thermostable lipase is also variously applied in a large number of fields.
  • Microbial extracellular lipases are usually more thermostable than animal or plant lipases. Microbial extracellular lipase has a potential use in industries and diagnostics. A major requirement for a commercial enzyme is thermal stability, since thermal denaturation is a common cause of enzyme inactivation. In addition, increasing enzyme thermostability would allow enzymatic reactions to be carried out at higher temperature; this would help to increase conversion rates, substrate solubility and to reduce the possibility of microbial growth and the viscosity of the reaction medium.
  • thermophiles could be good candidates for producing thermostable enzyme, this is often impractical because of low yields, and also high temperature fermentation equipment may be needed.
  • a molecular approach through genetic engineering is a good alternative in order to achieve high-level expression and to allow for the development of economic bulk production through the prokaryotic system. So far, several thermostable lipases have been successfully cloned and intracellularly expressed in heterologous hosts.
  • the expression of foreign proteins in prokaryotic systems is most widely used in order to achieve high-level expression.
  • the expression vector and the host are important issues for achieving maximal expression of cloned gene, since the molecular cloning of a foreign gene does not ensure that said gene will be successfully expressed.
  • Huang Xiaohong et al. in "High-level expression and purification of a truncated merozoite antigen-2 of Babesia equi in Escherichia coli and its potential for immunodiagnosis.” Journal of Clinical Microbiology, March 2003, vol. 41, no. 3, pages 1147-1151 ) describe the expression level of the entire and truncated antigen, and only the truncated antigen is tested for the binding feasibility of fusion protein to affinity column. Therefore, the disclosure in Huang can not be fully applied to the present invention, which generally is directed to the interfering of the signal peptide with protein expression and purification. Huang furthermore focuses on the immunogenicity of the antigen as produced (which shall be used in ELISA assays), and not the functional enzyme, thus, proper functional folding is not 100% required. In doing so, in addition, the C terminus of the antigen is deleted.
  • Yoder et al. explores on 12 truncated proteins regarding the expression level, and antibody cross-reactivity. However, the antibody cross-reactivity does not rely on proper functional folding as needed by T1 lipase for activity.
  • the immunological activity of Yoder et al. is dependent only to some extend on protein folding. In addition, Yoder et al. did not further process the fusion protein to obtain any truncated protein without the tag.
  • Leung et al. (in: "Polyclonal antibodies to glutathione S-transferase--verotoxin subunit a fusion proteins neutralize verotoxins" Clin Diagn Lab Immunol. 2002 May;9(3):687-92 ) exclude the signal peptide (N-terminal) and trans-membrane (C-terminal) region for protein expression and are able to express large amount of soluble proteins. Leung et al. then attempt to cleave the GST from the fusion proteins before immunization, but the yields of the end product after thrombin cleavage was very low. No detailed procedure is discussed in Leung et al. regarding the removal of GST from the fusion protein.
  • thermostable lipase that is rapidly cloned using Polymerase Chain Reaction (PCR) technique and manipulation of the thermostable lipase T1 gene is expressed through a prokaryotic system and subsequently purified.
  • PCR Polymerase Chain Reaction
  • the present invention provides a method for producing a recombinant thermostable Geobacillus T1 lipase comprising a) expression of the thermostable Geobacillus T1 lipase without the signal peptide (amino acids 1 to 28) as a GST-fusion protein in a prokaryotic host strain, and b) affinity chromatography purification of said GST-fusion protein.
  • Strain T1 that forms the basis of the present invention of thermophilic species: The Geobacillus sp. Strain T1 culture could be obtained from Enzyme and Microbial Technology Research Department of Biochemistry and Microbiology, Faculty of Science and Environmental Studies, University Putra Malaysia.
  • Strain T1 was isolated from an enriched medium (pH 7.0) containing NaCl 0.2%,MgSO 4 .7H 2 O 0.04%, MgCl 2 .6H 2 O 0.07%, CaCl 2 .2H 2 O 0.05%, KH 2 PO 4 0.03%, K 2 HPO 4 0.03%, (NH 4 ) 2 SO 4 0.05%, with the sole carbon source of olive oil (2%), at 60°C under shaking conditions of 150 rpm. The strain was plated on triolein agar plate for screening as a lipase producer.
  • the physiological characteristics study included catalase and oxidase test, and anaerobic growth, Voges-Proskauer test, growth at 30°C, 40°C and 70°C, growth in medium with pH 5.7, NaCl 2%, 5%, and lysozyme broth, fermentation of D-glucose, L-arabinose, D-xylose, D-mannitol and D-glucose, hydrolysis of starch, gelatin, casein and tween 80, decomposition of tyrosine, use of citrate and propionate, nitrate reduction, indol production, phenylalanine deaminase and arginine dihydrolase tests were performed. Fatty acids were extracted and analyzed following the instructions of the Sherlock microbial identification system.
  • the strain was furthermore deposited at the DSMZ on February 21, 2005 and received the Accession Number DSM 17139.
  • 16S rDNA was amplified by PCR using two universal primers, and the PCR product was purified. A purified PCR product was cloned into TOPO TA PCR 2.1 cloning vector (Invitrogen). The recombinant plasmid was extracted, and then was sequenced using an ABI PRISM 377 DNA sequencer (Applied Biosystems).
  • the chromosomal DNA was isolated and purified and the G + C content was determined using chromatography conditions.
  • the DNA was hydrolyzed, and the resulting nucleotides were analyzed by reverse-phase HPLC.
  • DNA/DNA hybridization was carried out using a model 2600 spectrophotometer.
  • RiboPrinter system combines molecular processing steps for ribotyping in a stand-alone, automated instrument. The steps included cellular lysis, digestion of chromosomal DNA with the restriction enzyme Eco R1 , separation of fragments by electrophoresis, transfer of DNA fragments to a nylon membrane, hybridization to a probe generated from the rrn B operon of E.coli, chemiluminescent detection of the probe as hybridized to the fragments containing rrn operon sequences, image detection and computer analysis of the RiboPrint patterns.
  • the isolated Strain T1 was an aerobic, gram-positive, endospore forming, rod-shaped bacteria (0.8-1.0 ⁇ m width and 2.5-6.0 ⁇ m long) ( Figure 1 ).
  • the DNA base composition of strain T1 was around 52.6% mol G + C.
  • the cylindrical endospores appeared terminally in swollen sporangia.
  • the growth of strain T1 occurred even at 70°C, but no growth was observed at 30°C and 40°C.
  • the strain was tolerant to the presence of NaCl up to 2%. Acid was produced from D-fructose, but not from D-glucose and D-mannitol.
  • the strain showed positive results both in citrate and nitrate tests.
  • the morphological and physiological characteristics are presented in Table 1 and 2.
  • Geobacillus strain T1 Characteristic Geobacillus strain T1 Cell width ( ⁇ m) 0.8-1.0 Cell length ( ⁇ m) 2.5-6.0 Spores oval/cylindrical + Swollen sporangium d Catalase + Oxidase - Anaerobic growth - VP reaction - pH in VP broth 4.9 Growth at 30°C - 40°C - 70°C + Growth in Medium pH 5.7 + NaCl 2% + 5% - Lysozyme broth - Production of acid from: D-glucose - L-arabinose w D-xylose w D-mannitol - D-fructose + Gas from glucose - Lecithinase n.g.
  • Taxa are indicated as: 1, Geobacillus zalihaii; 2, Geobacillus thermoleovorans (Zarilla and Perry, 1986); 3, Geobacillus kaustophilus (White et al., 1993).
  • the major amount of cellular fatty acids of strain T1 was iso-fatty acids (Table 3). Among these, from the iso-branched pentadecanoic acid (iso-C15), hexadecanoic acid (iso-C16) and heptadecanoic acid (iso-C17), which made up 78.33% of the total fatty acids, especially iso-C15 and iso-C17 were abundant.
  • the fatty acid profile distinguishes the genus Geobacillus clearly from other mesophiles and thermophiles of the genera Bacillus Alicyclobacillus, Brevibacillus, Aneurinibacillus, Sutfobacillus and Thermobacillus.
  • strain T1 and Geobacillus thermoleovorans DSM 5366 T shared typical fatty acid profile of Bacillus rRNA group 5, it could be differentiated by the % composition of iso-C16, as indicated in Table 3. Table 3. Cellular fatty acids composition of Geobacillus strain T1 and its phylogenetic neighbor. Fatty acid Geobacillus sp.
  • the RiboPrint pattern of strain T1 was not identified by the Dupont identification library in order to identify it at the species level (>0.85).
  • Its RiboPrint pattern showed the highest similarity to Geobacillus kaustophilus DSM 7263 T (0.69).
  • the pattern of Geobacillus kaustophilus DSM 7263 T and Geobacillus thermoleovorans DSM 5366 T show a binary similarity of 0.64.
  • strain T1 was recognized as a member of a novel species through morphology and physiological studies, cellular fatty acids composition, DNA composition, DNA/DNA hybridization, and RiboPrint analysis. Therefore, we propose the creation of a novel species, Geobacillus zalihae sp. nov., for strain T1 T . (za.li.'hae N.L. gen. n. zalihae of zaliha, in honor to the scientist from Universiti Putra Malaysia, who has contributed significantly to extremophiles).
  • the cells are rod-shaped, 0.8-1.0 width and 2.5-6.0 length, gram positive bacteria.
  • the terminal spores are cylindrical and swollen in the sporangium.
  • the DNA base composition of strain T1 is around 52.6% mol G + C. It contains a major amount of iso-fatty acids with iso-C15, and iso-C17 in abundance (77.19%). Growth is aerobic and the strain still growths at 70°C and is tolerant to up to 2% NaCl. It cannot perform anaerobic growth. Catalase and nitrate tests are positive. No acid is formed from D-glucose and D-mannitol. The strain can utilize citrate. Starch is hydrolyzed, but not gelatin and casein.
  • thermostable lipase gene from Geobacillus sp.
  • Recombinant plasmid pBAD/T1 (Leow et al., 2004) carrying the thermostable T1 lipase gene was used as source for subcloning.
  • E.coli strains were grown in LB medium at 37°C.
  • pRSET C Invitrogen
  • pET22b(+) Novagen
  • pGEX-4T1 pGEX-4T1
  • the plasmid DNA was isolated with a QIAGEN miniprep spin kit (QIAGEN; Hilden, Germany) according to the manufacturer's instructions.
  • the PCR product was purified with a GeneClean Kit (Qbiogene; Carlsbad, USA) as described by the supplier. Competent cells of E. coli were prepared by using a conventional CaCl 2 method.
  • thermostable T1 lipase gene Subcloning and Expression of the thermostable T1 lipase gene.
  • Subcloning of the T1 lipase gene was done by designing a set of primers which incorporated restriction enzyme sites Bam H1/ Eco R1 which included primers pGEX-For 5'-GAA GGG ATC CGT GAT GAA ATG CTG TCG GAT TAT G-3' and pGEX -Rev : 5'-AAT AGA ATT CTT AAG GCT GCA AGC TCG CCA A-3' for subcloning of the open reading frame of T1 lipase, and EH2-F : 5'-GAC GGG ATC CGC ATC CCT ACG CGC CAA TGA T-3' and pGEX - Rev.
  • E. coli BL21(De3)plysS harboring recombinant plasmids were grown in 1L blue cap bottles containing 200 ml of LB medium, supplemented with 100 ⁇ g/ml ampicillin and 35 ⁇ g/ml chloramphenicol on a rotary shaker (200 rpm) at 37°C.
  • IPTG isopropyl- ⁇ -D-thiogalactopyranoside
  • the fusion protein was subjected to thrombin cleavage at 20°C for 20 h, and the buffer was exchanged with Sephadex G-25 prior to dialysis against PBS (pH 7.3).
  • the GST tag and the thrombin enzyme were further removed using Glutahione-Sepharose HP, HiTrap Glutathione 4FF and HiTrap Benzamidine in series.
  • T1 lipase including the signal peptide was achieved using a prokaryotic system involving pBAD, pRSET C, pET22b(+) and pGEX-4T1 which were under the control of araC, T7, T7 lac and tac promoters, respectively.
  • pGEX-4T1 expression system which is under the control of tac promoter for an inducible high level expression. This was chosen for further study. Simple optimization was carried out in order to increase the soluble protein of a recombinant clone harboring recombinant plasmid pGEX-4T1 with signal peptide.
  • T1 lipase as GST fusion protein in prokaryotic system allows for a rapid purification of recombinant lipase through affinity chromatography.
  • GST fusion proteins are totally or partly insoluble. Furthermore, high level expression might be contributing to improper folding of partial and highly insoluble fusion protein and subsequently interfere with binding to the affinity column.
  • the insolubility of GST fusion protein is common. Therefore, the sarcosyl lysis method was used in order to solubilize partially improper folded active T1 fusion lipase.
  • the non-ionic detergent Triton X-100 was used in order to sequester sarcosyl with the hope to refold back the solubilized fusion protein in a correct folding, which subsequently allows the GST fusion protein to bind with affinity glutathione Sepharose 4FF.
  • Table 6 a recovery of around 25% and purification fold of 7.3 was achieved through anionic and non-ionic detergent-treatment of the fusion protein.
  • the signal peptide controls the entry of virtually all proteins into the secretory pathway, both in eukaryotes and prokaryotes, and is cleaved off while the protein is translocated through the membrane. However, it does not contribute to the structural gene of the thermostable T1 lipase. Thus, we tried to express the T1 lipase by omitting the signal peptide with the aim to improve the folding and interaction of the GST tag and the T1 mature lipase, without interfering with the affinity binding of the GST fusion protein to the immobilized glutathione on the matrix support.
  • T1 lipase gene significantly improved the expression level by 4.25 and 2.70 fold for induction time and inducer concentration, respectively (Table 5). Further optimization of the expression achieved an expression level of 41,902 U/L of culture when induced with 0.025 mM of IPTG at OD 600nm ⁇ 0.75 for 12 hours. There was an around 279 fold increase in expression level, when compared to wild-type Geobacillus sp. Strain T1.
  • Removing the signal peptide from the fusion protein not only improved the yield of active T1 lipase, but also simplified the purification using affinity chromatography in glutathione Sepharose 4FF column to homogeneity. As shown in Table 7, the recovery rate was around 72.55% with the purification fold being 2.87. Purification of fusion lipase increased the specific activity from 103.762 U/mg (crude cell lysate) to 297.929 U/mg (purified fusion lipase).
  • T1 mature lipase was obtained through subsequent purification steps (Table 8).
  • the fusion lipase was cleaved with thrombin protease at 20°C for 20 hours and subjected to Sephadex G-25 in order to exchange the buffer to PBS (pH 7.3) and to remove free glutathione prior to dialysis.
  • the lipase was subjected to affinity chromatography in glutathione sepharose HP, HiTrap glutathione sepharose 4FF and Benzamidine FF (high sub) in series, in order to remove the GST tag and the thrombin enzyme.
  • Table 7 Purification of GST fusion lipase without signal peptide Purification Total activity Total protein Specific activity Recovery Purification Steps (U) (mg) (U/mg) (%) fold Cell lysate 3,732.331 35.970 103.762 100.00 1.00 Glutathione Sepharose 2,707.880 9.089 297.929 72.55 2.87 Note: Direct purification of fusion protein was conducted with a Glutathione Sepharose 4FF affinity column without any detergent.
  • Table 8 Purification of T1 mature lipase Purification Total activity Total protein Specific activity Recovery Purification Steps (U) (mg) (U/mg) (%) fold Cell lysate 28,848.120 138.255 208.659 1.00 100.00 Affinity 1 20,557.051 42.038 489.011 71.26 2.34 Affinity 2 14, 852.742 15.487 959.03 51.49 4.60 Note: Purification of T1 mature lipase was conducted with affinity chromatography. Affinity 1 represents glutathione Sepharose HP. Affinity 2 represents glutathione Sepharose HP, HiTrap glutathione Sepharose 4FF and Hitrap Benzamidine (high sub) arranged in series
  • the T1 lipase was tested at temperatures ranging from 40°C to 80°C at 5°C intervals for 30 min for enzyme activity. The thermostability test was conducted at various temperatures for different numbers of hours. Recombinant T1 lipase was also kept at a wide range of pH values ranging from pH 4-12 for pH activity and stability determination.
  • the buffer systems used were 50 mM acetate buffer (pH 4-6), potassium phosphate buffer (pH 6-8), Tris-HCl buffer (pH 8-9), glycine-NaOH buffer (pH 9-11), and Na 2 HPO 3 /NaOH buffer (pH 11-12).
  • the effects of effectors (metal ions, surfactants) and inhibitors were studied at a concentrations of 1 mM and 5 mM, respectively at 50°C for 30 min, with the exception of pepstatin (1.0 mM).
  • the effect of temperature activity and stability was tested at various temperatures for 30 min.
  • the enzyme was most active in the temperature range of 60°C to 80°C, with maximal activity at 70°C ( Figure 2 ).
  • the effect of pH on the activity and stability of the lipase activity was studied at various pHs for 30 min under shaking condition. As shown in Figure 3 , the lipase was active over a wide pH range, especially at pH 6 to 10, with an optimum pH of 9, with olive oil as substrate.
  • the pH treatment showed that T1 mature lipase was relatively stable at alkaline pH ( Figure 4 ).
  • T1 lipase prefers natural oils as substrates, compared to triglycerides. It is more selective towards long carbon chain natural oils such as olive oil, corn oil, sunflower oil and palm oil. This enables the use of T1 lipase as catalyst in industrial application.
  • the inhibitory effects on lipase activity of several metal chelating agent, reducing agents, serine and aspartate inhibitors were used to study the inhibitory effect against T1 mature lipase. It is not a metalloenzyme, since EDTA showed only a slight effect on lipase activity even at 5 mM.
  • the reducing agents, such as ⁇ -mercaptoethanol and DTT gave little inhibitory effect on T1 lipase.
  • the lipase was strongly inhibited by the addition of 5 mM PMSF and 1 mM of Pepstatin, showing that serine and aspartate residues play an important key role in the catalytic mechanism ( Figure 8 ).
  • the P1 lipase from Bacillus stearothermophilus showed 77% inhibition in the presence of 10 mM of PMSF (Sunchaikul et al., 2001).
  • T1 fusion and mature lipase were compared in order to study the effect of the GST tag on lipase activity. Both lipases was purified and their physiochemical properties were studied (Table 9). The fusion partner slightly reduced the optimal temperature and pH to 65°C and pH 8, respectively. No significant difference was observed with metal ions and substrates. However, Tween 20-80 enhanced the effect of T1 mature lipase but were only stable in the presence of fusion partners. Both of them were inhibited by serine and aspartate inhibitors at concentrations as tested.
  • the GST tag was rigidly fused to the T1 mature lipase without a signal peptide, it only conferred a minimal effect on the tertiary structure and biological activity, without significantly changing physiocochemical properties. There are no significant differences between the T1 fusion and the mature lipases except for the optimum pH and temperature, wherein only one unit pH and 5°C higher was observed for T1 mature lipase. The behavior of T1 fusion and mature lipase to serine and aspartate inhibitors was the same. Therefore, we proposed the T1 lipase fused to GST tag for a higher economical production, to simplify fusion protein purification for industrial application especially for detergent formulations for warm wash laundry detergent.
  • the precipitate formed by the fusion protein because of aggregation at high concentrations of fusion lipase was readily solubilized by resolving it in buffer of pH 9 that is far away from the pI of the fusion lipase.

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Claims (5)

  1. Verfahren zur Herstellung einer rekombinanten thermostabilen Geobacillus T1 -Lipase, umfassend
    a) Expression der thermostabilen Geobacillus T1-Lipase ohne das Signalpeptid (Aminosäuren 1 bis 28) als ein GST-Fusionsprotein in einem prokaryontischen Wirtsstamm, und
    b) Reinigung des GST-Fusionsproteins mittels Affinitäts-Chromatographie.
  2. Verfahren nach Anspruch 1, weiter umfassend
    c) Abspalten des GST-Anteils von dem GST-Fusionsprotein.
  3. Verfahren nach Anspruch 2, weiter umfassend
    d) weitere Reinigung der rekombinanten thermostabilen Geobacillus T1-Lipase.
  4. Verfahren nach einem der Ansprüche 1 bis 3, wobei für die Reinigungsschritte kein Detergens verwendet wird.
  5. Verfahren nach einem der Ansprüche 1 bis 4, wobei die rekombinante thermostabile T1-Lipase aus dem Geobacillus Stamm T1-DSM 17139 isoliert wird.
EP05005743A 2004-08-02 2005-03-16 Verfahren zur Herstellung einer rekombinanten thermostabilen Lipase von Geobacillus T1 Expired - Fee Related EP1624056B1 (de)

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EP2806030A1 (de) * 2013-05-20 2014-11-26 Universiti Putra Malaysia Verfahren zur Herstellung von Lipase
RU2540873C1 (ru) * 2013-09-23 2015-02-10 Федеральное государственное бюджетное учреждение науки Институт цитологии и генетики Сибирского отделения Российской академии наук (ИЦиг СО РАН) ШТАММ БАКТЕРИИ Escerichia coli XL1-blue/pQS-G3, ПРОДУЦЕНТ ТЕРМОСТАБИЛЬНОЙ ЛИПАЗЫ БАКТЕРИИ Geobacillus stearothermophilus G3
CN106868026A (zh) * 2017-03-22 2017-06-20 东莞泛亚太生物科技有限公司 用于生产具有耐温性脂肪酶的基因
CN107475145B (zh) * 2017-04-21 2021-05-25 宜春学院 产耐中高温纤维素酶菌株及其筛选方法

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2017069606A3 (en) * 2015-10-23 2017-06-01 Myenzyme Sdn Bdh Thermolabile enzyme and method of preparing thereof

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JP4912636B2 (ja) 2012-04-11
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US7319029B2 (en) 2008-01-15
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