EP1171150A2 - Pseudomycin antifungal compositions and methods for their use - Google Patents

Pseudomycin antifungal compositions and methods for their use

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Publication number
EP1171150A2
EP1171150A2 EP00923108A EP00923108A EP1171150A2 EP 1171150 A2 EP1171150 A2 EP 1171150A2 EP 00923108 A EP00923108 A EP 00923108A EP 00923108 A EP00923108 A EP 00923108A EP 1171150 A2 EP1171150 A2 EP 1171150A2
Authority
EP
European Patent Office
Prior art keywords
pseudomycin
cyclodextrin
antifungal agent
antifungal
lipodepsidecapeptide
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP00923108A
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German (de)
English (en)
French (fr)
Inventor
Venkatraghavan Vasudevan
Thomas Warren Jones
Michael John Rodriguez
Stephanie Ann Sweetana
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Eli Lilly and Co
Original Assignee
Eli Lilly and Co
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Filing date
Publication date
Application filed by Eli Lilly and Co filed Critical Eli Lilly and Co
Publication of EP1171150A2 publication Critical patent/EP1171150A2/en
Withdrawn legal-status Critical Current

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Classifications

    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/30Macromolecular organic or inorganic compounds, e.g. inorganic polyphosphates
    • A61K47/36Polysaccharides; Derivatives thereof, e.g. gums, starch, alginate, dextrin, hyaluronic acid, chitosan, inulin, agar or pectin
    • A61K47/40Cyclodextrins; Derivatives thereof
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/04Peptides having up to 20 amino acids in a fully defined sequence; Derivatives thereof
    • A61K38/08Peptides having 5 to 11 amino acids
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/04Peptides having up to 20 amino acids in a fully defined sequence; Derivatives thereof
    • A61K38/12Cyclic peptides, e.g. bacitracins; Polymyxins; Gramicidins S, C; Tyrocidins A, B or C
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K9/00Medicinal preparations characterised by special physical form
    • A61K9/0012Galenical forms characterised by the site of application
    • A61K9/0019Injectable compositions; Intramuscular, intravenous, arterial, subcutaneous administration; Compositions to be administered through the skin in an invasive manner
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/10Antimycotics

Definitions

  • the present invention relates to methods and compositions for treating fungal infections that include formulations of a pseudomycin or a lipodepsidecapeptide and a cyclodextrin, in particular, hydroxypropyl- ⁇ -cyclodextrin or sulfobutylether- ⁇ - cyclodextrin.
  • Fungal infections are a significant cause of disease, degradation of quality of life, and mortality among humans, particularly for immune compromised patients.
  • the incidence in fungal infections in humans has increased greatly in the past 20 years. This is in part due to increased numbers of people with immune systems weakened or threatened by organ transplants, cancer chemotherapy, AIDS, age, and other similar disorders or conditions.
  • Such patients are prone to attack by fungal pathogens that are prevalent throughout the population but are kept in check by a functioning immune system.
  • These pathogens are difficult to control because some existing antifungal agents are either highly toxic or only inhibit fungal activity.
  • the polyenes are fungicidal but toxic; whereas, the azoles are much less toxic but only fungistatic. More importantly, there have been recent reports of azole and polyene resistant strains of Candida which severely limits therapy options against such strains.
  • Pseudomycins are natural products derived from isolates of Pseudomonas syringae.
  • P. syringae is a large family of plant bacteria that have been the source of several bioactive substances, such as bacitracin and the syringomycins.
  • Natural strains and transposon generated mutants of P. syringae produce compounds with antifungal activity.
  • pseudomycins A, B, C and C have each been isolated and pu ⁇ fied and their structures have been characterized by methods including amino acid sequencing, NMR, and mass spectrometry and have been shown to possess wide spectrum antifungal activity, including activity against important fungal pathogens in both humans and plants. See, e.g. Bal o et al., "Novel bioactive podepsipeptides from Pseudomonas syringae: the pseudomycins," FEBS Lett. 355, 96-100 (1994) and U.S. Patent No.
  • pseudomycins represent structurally distinct families of antifungal compounds.
  • formulations of pseudomycins and related antifungal agents from P syringae that are effective for antifungal therapy have not been developed Typically injection of a pseudomycm is accompanied by unacceptable adverse side effects such as irritation at the injection site.
  • a composition of a pseudomycm or a related antifungal agent that can be used for treating fungal infections without the adverse side effects observed in certain formulations of pseudomycins
  • the present invention relates to a method and composition effective for administration of a pseudomycm or a related antifungal agent to a patient in need thereof.
  • the method includes treating a fungal infection by administe ⁇ ng an effective amount of a composition including a pseudomycm, such as pseudomycm B, or a related antifungal agent and hydroxypropyl- ⁇ -cyclodext ⁇ n or sulfobutylether- ⁇ -cyclodext ⁇ n
  • the method is effective to reduce symptoms of the fungal infection and, preferably, kills the fungus causing the infection
  • the method is effective against infections of fungi including Candida spp., Cryptococcus neoformans, Asperg ⁇ lus fumigatus, and Histoplasma capsulatum
  • the method reduces adverse effects of injecting a pseudomycm, such as pseudomycm B, or a related antifungal agent by administe ⁇ ng the pseudomycm or a related antifungal agent in a composition
  • Such a composition is effective for treating or reducing symptoms of fungal infections, for reducing adverse effects of injecting a pseudomycin, such as pseudomycin B, or a related antifungal agent and for administering toxicologically relevant doses of a pseudomycin, such as pseudomycin B, or a related antifungal agent.
  • the composition includes the cyclodextrin in a molar excess over the pseudomycin or a related antifungal agent, preferably in at least about a two-fold molar excess and is suitable for parenteral administration.
  • the composition can include excipients such as sodium chloride, mannitol, or dextrose which adjust the toxicity of the composition.
  • compositions containing a pseudomycin or a lipodepsidecapeptide antifungal agent, or a pharmaceutically acceptable salt, hydrate or ester thereof, in combination with a hydroxyalkyl- ⁇ -cyclodextrin or a sulfoalkylether- ⁇ -cyclodextrin may be used for the manufacture of a medicament for the treatment of a fungal infection.
  • pseudomycin refers to compounds having formula I:
  • R is a lipophilic moiety.
  • the lipophilic moiety includes C 9 -C ⁇ 5 alkyl, C -C ⁇ 5 hydroxyalkyl, C 9 -C ⁇ 5 dihydroxyalkyl, C -C ⁇ 5 alkenyl, C 9 -C ⁇ 5 hydroxyalkenyl, or C 9 -C ⁇ 5 dihydroxyalkenyl.
  • the pseudomycin compounds A, A', B, B', C, C are represented by the formula I above where R is as defined below.
  • lipodepsidecapeptide refers to compounds having formula II:
  • R is a lipophilic moiety.
  • the lipophilic moiety includes C 9 -C[ 5 alkyl, C -C ⁇ hydroxyalkyl, C 9 -C ⁇ 5 dihydroxyalkyl, C 9 -C !5 alkenyl, C -C ⁇ hydroxyalkenyl, or C 9 -C ⁇ 5 dihydroxyalkenyl.
  • the lipophilic moiety is Cn alkyl.
  • the alkyl, hydroxyalkyl, dihydroxyalkyl, alkenyl, hydroxyalkenyl, or dihydroxyalkenyl groups may be branched or unbranched.
  • the amino acid sequence of the depsidecapeptide ring is threonine-alanine-threonine-glutamine-homoserine-dehydroaminobutyric acid-alanine- dehydroalanine-threonine-arginine, referred to herein as "25-B 1 decapeptide” or "Thr-Ala-Thr-Gln-Xaa-Xaa-Ala-Xaa-Thr-Arg (SEQ ID NO: 1)".
  • pseudomycin refers to one or more members of a family of antifungal agents that has been isolated from the bacterium Pseudomonas syringae.
  • a pseudomycin is a lipodepsipeptide, a cyclic peptide including one or more unusual amino acids and having one or more appended hydrophobic or fatty acid side chains.
  • the pseudomycins are lipodepsinanopeptides, with a cyclic peptide portion closed by a lactone bond and including the unusual amino acids 4-chlorothreonine (ClThr), 3-hydroxyaspartic acid (HOAsp), 2,3-dehydro-2-aminobutyric acid (Dhb), and 2,4-diaminobutyric acid (Dab). It is believed that these unusual amino acids are involved in biological characteristics of the pseudomycins, such as stability in serum and their killing action.
  • Pseudomycins include pseudomycin A, pseudomycin A', pseudomycin B (PSB), pseudomycin B', pseudomycin C, and pseudomycin C. Each of these pseudomycins has the same cyclic peptide nucleus, but they differ in the hydrophobic side chain attached to this nucleus.
  • Pseudomycins A, A', B, B', C and C have each been isolated and purified and their structures have been characterized by methods including sequencing, NMR, and mass spectrometry. See, e.g., U.S. Patent No. 5,576,298, issued November 19, 1996 to Strobel et al. Harrison et al.); "Pseudomycins, a family of novel peptides from Pseudomonas Syringae possessing broad-spectrum antifungal activity" /. Gen.
  • Tn 903 a transposon bearing a transposon known as Tn 903, which encodes kanamycin resistance.
  • Tn 903 The sequence of and methods for manipulating transposon Tn 903 are known. Oka et al. J. Mol. Biol. 147, 217-226 (1981); "Nucleotide sequence of the kanamycin resistance transposon Tn 903.” Methods for growth of various strains of P. syringae and their use in production of antifungal agents such as pseudomycins are disclosed in U.S. Patent Application Serial No. PCT ⁇ JS00/08728 by Matthew D. Hilton, et al. entitled
  • pseudomycins vary in structure and properties.
  • the pseudomycins exhibit activity against a wide variety of fungi and also exhibit generally acceptable toxicity.
  • pseudomycin B has greater potency against certain fungi and a lower level of toxicity. Therefore, for the present formulations and methods, pseudomycin B is preferred.
  • Pseudomycin B has a cyclic nonapeptide ring having the sequence Ser-Dab-Asp-Lys-Dab-Thr-Dhb-HOAsp-OThr, more specifically, L-Ser-D-
  • antifungal agents related to pseudomycins include lipodepsidecapeptide antifungal agents produced by Pseudomonas syringae.
  • the organism is cultured with agitation in an aqueous nutrient medium including an effective amount of three or fewer amino acids.
  • the three or fewer amino acids are preferably glutamic acid, glycine, histidine, or a combination thereof.
  • the amino acids include glycine and, optionally, one or more of a potato product and a lipid.
  • Culturing is conducted under conditions effective for growth of P. syringae and production of the desired pseudomycin or pseudomycins. Effective conditions include temperature of about 22°C to about 27°C, and a duration of about 36 hours to about 96 hours.
  • P. syringae When cultivated on the media such as those described herein, P. syringae can grow in cell densities up to about 10-15 g/L dry weight and produce pseudomycins in total amounts at least about 10 ⁇ g/mL, preferably at least about 40 ⁇ g/mL, more preferably about 500 ⁇ g/mL or more.
  • Controlling the concentration of oxygen in the medium during culturing of P. syringae is advantageous for production of a pseudomycin.
  • oxygen levels are advantageous for production of a pseudomycin.
  • RECTIFIED SHEET (RULE 91) ISA/ EP maintained at about 5% to about 50% saturation, more preferably about 30% saturation. Sparging with air, with pure oxygen, or with gas mixtures including oxygen can regulate the concentration of oxygen in the medium. Further, adjustment of the agitation rate can be used to adjust the oxygen transfer rate. Controlling the pH of the medium during culturing of P. syringae is advantageous for production of a pseudomycin. Pseudomycins are labile at basic pH, and significant degradation can occur if the pH of the culture medium is above about 6 for more than about 12 hours. Preferably, the pH of the culture medium is maintained at less than about 6, more preferably less than about 5.5, and most preferably above 4.0. The pH is preferably maintained at about 5 to about 5.4, more preferably about 5.0 to about 5.2. Although not limiting to the present invention, it is believed that pseudomycin degradation at basic pH is due to opening of the lactone ring and leaving of Cl " .
  • P. syringae can produce one or more pseudomycins when grown in batch culture.
  • fed-batch or semi-continuous feed of glucose and, optionally, an acid or base, such as ammonium hydroxide, to control pH enhances pseudomycin production.
  • Pseudomycin production by P. syringae can be further enhanced by using continuous feed methods in which glucose and, optionally, an acid or base, such as ammonium hydroxide, to control pH, are fed automatically.
  • glucose and, optionally, an acid or base, such as ammonium hydroxide, to control pH are fed automatically.
  • one or more pseudomycins can be produced in substantial quantities. That is, total quantities of one or more pseudomycins from at least about 200 ⁇ g/mL to about 900 ⁇ g/mL, preferably of from about 600 ⁇ g/mL to about 900 ⁇ g/mL, more preferably from about 800 ⁇ g/mL to about 900 ⁇ g/mL.
  • pseudomycin A is produced in total quantities from at least about 10 ⁇ g/mL to about 400 ⁇ g/mL, more preferably of from about 300 ⁇ g/mL to about 400 ⁇ g/mL, most preferably from about 350 ⁇ g/mL to about 400 ⁇ g/mL.
  • pseudomycin B is produced in total quantities from at least about 10 ⁇ g/mL to about 300 ⁇ g/mL, more preferably from about 200 ⁇ g/mL to about 300 ⁇ g/mL, most preferably from about 250 ⁇ g/mL to about 300 ⁇ g/mL.
  • pseudomycin C is produced in total quantities from at least about 5 ⁇ g/mL to about 100 ⁇ g/mL, more preferably of from about 5 ⁇ g/mL to about 50 ⁇ g/mL, most preferably from about 10 ⁇ g/mL to about 50 ⁇ g/mL.
  • pseudomycin C is produced in total quantities from at least about 1 ⁇ g/mL to about 50 ⁇ g/mL, more preferably of from about 10 ⁇ g/mL to about 50 ⁇ g/mL, most preferably from about 30 ⁇ g/mL to about 50 ⁇ g/mL.
  • Effective conditions for the production of Pseudomycin A' and/or B' include temperature of about 22°C to about 27°C, and a duration of about 36 hours to about 96 hours.
  • syringae can grow in cell densities up to about 10-15 g/L dry weight and produce pseudomycins A' and/or B' in total amounts at least about 10 ⁇ g/mL.
  • Choice of P. syringae strain can affect the amount and distribution of pseudomycin or pseudomycins produced by culturing under the conditions described herein. For example, strains MSU 16 H and 67 HI, and like strains, each produce predominantly pseudomycin A, but also produce pseudomycin B and C, typically in ratios of roughly 4:2:1. Strain 67 HI and like strains, however, typically produce levels of pseudomycins about 3- to about 5-fold larger than are produced by strain MSU 16H.
  • strain 25-B1 and like strains produce more pseudomycin B and less pseudomycin C.
  • Strain 7H9-1 and like strains are distinctive in producing predominantly pseudomycin B and for producing larger amounts of pseudomycin B than other strains. For example this strain can produce pseudomycin B in at least a 10-fold excess over either pseudomycin A or C.
  • Pseudomycin A' and or B' can be produced from mutants of P. syringae.
  • the mutants are produced by treating the bacteria with an amount of a mutagenic agent effective to produce mutants that overproduce pseudomycin A' and or B', that produce pseudomycin A' and or B' in excess over other pseudomycins, or that produce pseudomycin A' and/or B' under advantageous growth conditions. While the type and amount of mutagenic agent to be used can vary, a preferred method is to serially dilute NTG to levels ranging from 1 to 100 ⁇ g ml. The mutants overproduce pseudomycin A' and/or B' preferably to at least about 10 ⁇ g/mL.
  • Each pseudomycin or mixtures of pseudomycins can be detected, determined, isolated, and/or purified by any of a variety of methods known to those of skill in the art.
  • the level of pseudomycin activity in a broth or in an isolated or purified composition can be determined by antifungal action against a fungus such as Candida.
  • Numerous methods are known for the preparation and analysis of the pseudomycins.
  • one or more pseudomycins can be isolated and purified by chromatography, such as HPLC.
  • the organism is cultured with agitation in an aqueous nutrient medium including an effective amount of three or fewer amino acids.
  • the three or fewer amino acids are preferably glutamic acid, glycine, histidine, or a combination thereof.
  • the amino acids include glycine and, optionally, one or more of a potato product and a lipid. Culturing is conducted under conditions effective for growth of P. syringae and production of a desired P.
  • syringae lipodepsidecapeptide such as 25-B1 decapeptide antifungal agent A.
  • Effective conditions include a temperature of about 22° C to about 27° C, and a duration of about 36 hours to about 96 hours.
  • P. syringae can grow at cell densities up to about 10-15 g/L dry weight and produce a P. syringae lipodepsidecapeptide, such as 25-B1 decapeptide antifungal agent A, in a total amount at least about 10 ⁇ g/mL, preferably at least about 50 ⁇ g/mL.
  • Controlling the concentration of oxygen in the medium during culturing of P. syringae is advantageous for production of a P. syringae lipodepsidecapeptide, such as 25-B1 decapeptide antifungal agent A.
  • oxygen levels are maintained at about 5% to about 50% saturation, more preferably about 30% saturation. Sparging with air, with pure oxygen, or with gas mixtures including oxygen can regulate the concentration of oxygen in the medium. Further, adjustment of the agitation rate can be used to adjust the oxygen transfer rate.
  • Controlling the pH of the medium during culturing of P. syringae is advantageous for production of a P. syringae lipodepsidecapeptide, such as 25-B 1 decapeptide antifungal agent A.
  • the pH of the culture medium can be maintained at less than about 6 and above about 4.
  • P. syringae can produce a P. syringae lipodepsidecapeptide, such as 25-B1 decapeptide antifungal agent A, when grown in batch culture.
  • fed-batch or semi-continuous feed of glucose and, optionally, an acid or base, such as ammonium hydroxide, to control pH enhances production of a P. syringae lipodepsidecapeptide, such as 25-B1 decapeptide antifungal agent A.
  • Production of a P. syringae lipodepsidecapeptide, such as 25-B 1 decapeptide antifungal agent A by P.
  • syringae can be further enhanced by using continuous culture methods in which glucose and, optionally, an acid or base, such as ammonium hydroxide, to control pH, are fed automatically.
  • the pH is preferably maintained at a pH of about 5 to about 5.4, more preferably about 5.0 to about 5.2.
  • Choice of P. syringae strain can affect the amount and distribution of a P. syringae lipodepsidecapeptide, such as 25-B1 decapeptide antifungal agent A, produced by culturing under the conditions described herein.
  • a P. syringae lipodepsidecapeptide such as 25-B1 decapeptide antifungal agent A
  • strain 25 Bl can produce predominantly 25-B 1 decapeptide antifungal agent A.
  • the cyclic decapeptide nucleus of the P. syringae lipodepsidecapeptides can be prepared by cleaving off the lipophilic moiety, such as by deacylation. Cleavage and deacylation methods are well-known to those skilled in the art, such as the use of deacylase enzymes.
  • cyclodextrin refers to a compound including cyclic alpha(l— >4) linked D-glucopyranose units.
  • cyclodextrins are formed by the action of an amylase on starch
  • ⁇ -cyclodextrin refers to a cyclodextrin with 6 cyclic, linked D- glucopyranose units
  • ⁇ -cyclodextrin has 7 cyclic, linked D-glucopyranose units
  • ⁇ - cyclodextrin has 8 cyclic, linked D-glucopyranose units.
  • cyclodextrins are known to form inclusion compounds with other organic molecules, with salts, and with halogens either in the solid state or in aqueous solutions.
  • Most natural, unsubstituted cyclodextrins exhibit unacceptable toxicity in pharmaceutical compositions and are not readily eliminated once in a patient's blood stream.
  • Methods for preparing cyclodextrins are well-known to those skilled in the art.
  • Cyclodextrins include substituted cyclodextrins.
  • substituted cyclodextrin refers to a derivative of a cyclodextrin formed by addition of a side chain to one or more positions on the cyclodextrin.
  • the side chain can be an organic moiety, or a heteroorganic moiety.
  • Substituted cyclodextrins include cyclodextrins that have been alkylated, hydroxy alkylated or reacted to form a sulfoalkyl ether.
  • Substituted cyclodextrins include hydroxypropyl cyclodextrin, hydroxyethyl cyclodextrin, glucosyl cyclodextrin, maltosyl cyclodextrin, and sulfobutylether cyclodextrin.
  • Methods for preparing cyclodextrin derivatives are known in the art, and certain methods are described in U.S. Patent Nos. 4,727,064 (issued to Pitha on February 23, 1988) and 5,134,127 (issued to Stella et al. on July 28, 1992), European Patent Application Publication Number 0 499 322 Al, and Pitha et al., Int. J. Pharm.. 29, 73-82 (1986). The disclosures of each of the documents cited in this paragraph is specifically incorporated herein by reference.
  • the cyclodextrins vary in structure and properties.
  • the size (e.g. diameter, and depth) and functionality (e.g. hydrophobicity, charge, reactivity, and ability to hydrogen bond) of the hydrophobic cavity varies among the substituted and unsubstituted ⁇ -, ⁇ -, and ⁇ -cyclodextrins.
  • a cyclodextrin selected for a formulation has a size and functionality that compliments the other components of the formulation.
  • substituted cyclodextrins like the hydroxyalkyl cyclodextrins and sulfoalkylether cyclodextrins have a size and functionality that compliment the other components of the formulation, such as the pseudomycin or related antifungal agent, such as pseudomycin B.
  • Preferred cyclodextrins include hydroxypropyl- ⁇ -cyclodextrin (HP-CD), and sulfobutylether- ⁇ - cyclodextrin (SBE-CD).
  • Sulfobutylether cyclodextrin is commercially available and can be synthesized by methods known in the art.
  • sulfobutylether cyclodextrin or SBE-CD refers to the sulfobutylether derivative of ⁇ -cyclodextrin typically including an average of about 1 to about 8, preferably about 6 to about 7 sulfobutylether groups at the 2, 3, and 6 positions on the ⁇ -cyclodextrin ring.
  • Hydroxypropyl cyclodextrin is commercially available and can be synthesized by methods known in the art.
  • hydroxypropyl cyclodextrin or HP-CD refers to the 2-hydroxypropyl derivative of ⁇ - cyclodextrin typically including an average of about 8 2-hydroxypropyl groups at 2, 3, and 6 positions on the ⁇ -cyclodextrin ring.
  • Pseudomycins have several biological activities including killing various fungi, such as fungal pathogens of plants and animals.
  • pseudomycins or related antifungal agents are active antimycotic agents against fungi that cause opportunistic infections in immune compromised individuals. These fungi include Cryptococcus neoformans, Aspergillus fumigatus, Histoplasma capsulatum, and various species of Candida including C. parapsilosis, C. albicans, C. glabrata, C. tropicalis, and C. krusei. Killing, rather than inhibiting the growth of fungi, particularly of fungal pathogens, is a desirable and preferred biological activity of a pseudomycin.
  • the pseudomycins have also been shown to be toxic to a broad range of plant- pathogenic fungi including Rynchosporium secalis, Ceratocystis ulmi, Rizoctonia solani, Sclerotinia sclerotiorum, Verticillium albo-atrum, Verticillium dahliae, Tliielaviopis basicola, Fusarium oxysporum and Fusarium culmorum.
  • Pseudomycins or related antifungal agents have certain adverse biological activities, or adverse effects.
  • adverse effects of a pseudomycin or related antifungal agent refers to adverse effects occurring at or near the site of injection of a pseudomycin or related antifungal agent.
  • a pseudomycin such as pseudomycin B
  • a related antifungal agent For example, intravenous injection of a pseudomycin, such as pseudomycin B, in an acetate buffer formulation results in damaging the vein into which the pseudomycin was injected. Outside the vein (i.e., extravasation), pseudomycin damages tissue near the site of injection.
  • a pseudomycin such as pseudomycin B
  • the adverse effects of a pseudomycin, such as pseudomycin B, on the vein and on surrounding tissues include destruction of the endothelium of the vein, destruction of tissue, inflammation, and local toxicity to host tissues.
  • intravenous injection of the pseudomycin results in loss of vascular endothelium and extravasation of the pseudomycin which, in turn, results in adverse effects on the tissues around the vein.
  • Adverse effects result from injection of numerous different formulations of a pseudomycin, such as pseudomycin B, or a related antifungal agent including an acetate buffer formulation, a saline formulation, a microemulsion formulation, an emulsion formulation, a Povidone K12 complex formulation, and a micelle formulation.
  • a pseudomycin such as pseudomycin B
  • a related antifungal agent including an acetate buffer formulation, a saline formulation, a microemulsion formulation, an emulsion formulation, a Povidone K12 complex formulation, and a micelle formulation.
  • the observed adverse effects with these vehicles prevent administration of effective antifungal amounts of the pseudomycin.
  • the adverse effects typically require halting dosing with the pseudomycin or related antifungal agent after only one or a few injections, and before a sufficient antifungal effect is obtained. Even in their milder forms, such adverse effects at the site of injection can discourage patient compliance with an effective dosing regime.
  • an effective antifungal method employing pseudomycin or related antifungal agent requires a formulation that allows administration of repeated doses.
  • a formulation permits administration of repeated doses of pseudomycin or related antifungal agent of at least about 0.01 mg/kg, preferably more than about 0.1 mg/kg, preferably about 0.1 to about 5 mg/kg, more preferably about 0.1 to about 0.5 mg/kg, without unacceptable adverse effects at the site of injection.
  • the observed adverse effects also prevent administration of doses of a pseudomycin, such as pseudomycin B, or a related antifungal agent approaching the maximum tolerated dose, that is, the lowest dose that causes significant systemic toxicity or target organ toxicity in the host.
  • a pseudomycin such as pseudomycin B
  • a related antifungal agent approaching the maximum tolerated dose that is, the lowest dose that causes significant systemic toxicity or target organ toxicity in the host.
  • Such high doses of pseudomycin are typically about 0.5 mg/kg, preferably about 5 mg/kg or more, preferably about 5 to about 25-50 mg/kg.
  • Even a single administration of pseudomycin in vehicles such as an acetate buffer can cause adverse effects that prevent further administration of pseudomycin or related antifungal agent.
  • Such adverse effects can prevent administration of a toxicologically relevant dose of pseudomycin or related antifungal agent, which prevents determining relevant toxicological parameters for the antifungal agent.
  • Such high doses also become necessary for therapy of fungal infections for strains or organisms tolerant of or resistant to
  • Formulating a pseudomycin, such as pseudomycin B, or related antifungal agent with a cyclodextrin, such as HP-CD, SBE-CD, or a like cyclodextrin allows effective antifungal or toxicological dosing of the agent. Such a formulation reduces or prevents adverse effects of injection of the pseudomycin or related antifungal agent.
  • Pseudomycin B is soluble in aqueous solution to at least about 15 mg/mL, so the cyclodextrin is not typically needed to increase the solubility of this antifungal agent.
  • Pseudomycin B and HP-CD or SPE-CD can be dissolved without difficulty at suitable concentrations in an aqueous vehicle such as saline for injection, or known mannitol or dextrose vehicles.
  • aqueous vehicle such as saline for injection, or known mannitol or dextrose vehicles.
  • the toxicity of the formulation can be adjusted with, for example, NaCl to bring it within an appropriate physiological range, if necessary.
  • a formulation of a pseudomycin, such as pseudomycin B, or a related antifungal agent with HP-CD includes about 0.05 mg/mL to about 20 mg/mL of pseudomycin, preferably about 1 to about 15 mg/mL.
  • the formulation includes HP-CD, SBE-CD, or a like cyclodextrin in an amount effective to reduce the adverse effects of injection of pseudomycin or related antifungal agent and to allow toxicological or antifungal dosing of this antifungal agent.
  • HP-CD, SBE- CD, or a like cyclodextrin are present in the formulation at about 0.5 wt-% (wt/vol of solution) to about 6 wt-%, preferably about 1 wt-% to about 5 wt-%, preferably about 2 wt-%.
  • HP-CD, SBE-CD, or a like cyclodextrin is present in a molar excess over the pseudomycin, such as pseudomycin B, or a related antifungal agent, preferably, at least about a 2-fold to about a 4-fold molar excess. Dosing of such an effective toxicological or antifungal formulation can occur for at least about 1-5, preferably about 2-3 injections per day for about 1-7 days without unacceptable adverse effects at the site of injection.
  • a pseudomycin such as pseudomycin B, or a related antifungal agent includes a peptide ring and a long fatty chain and it is believed a long fatty chain may induce the formation of micelles in aqueous solutions or in blood.
  • the vehicle can include an agent that complexes the pseudomycin or related antifungal agent and prevents the aggregates from damaging the vein and surrounding tissues.
  • an agent that complexes the pseudomycin or related antifungal agent and prevents the aggregates from damaging the vein and surrounding tissues can, according to this model, provide a form of the pseudomycin or related antifungal agent that does not cause the adverse reaction at the site of injection.
  • a composition of a pseudomycin, such as pseudomycin B, or a related antifungal agent with a cyclodextrin, such as HP-CD or SPE-CD reduces the burden of a fungal infection, reduces symptoms associated with the fungal infection, and can result in elimination of the fungal infection.
  • the fungal infection can be eliminated because pseudomycins can kill, rather than just reducing the growth of fungi.
  • a typical patient in need of antifungal therapy with a formulation of a pseudomycin, such as pseudomycin B, or a related antifungal agent and HP-CD, SBE-CD, or a like cyclodextrin has severe symptoms of infection, such as high fever, and is likely to be in intensive or critical care.
  • Various fungi can cause such serious infections.
  • Candida for example, causes mucosal and serious systemic infections and exists in strains that are resistant to azole and polyene antifungals.
  • Aspergillus causes life- threatening systemic infections.
  • Cryptococcus is responsible for meningitis.
  • Such serious fungal infections may occur in immune compromised patients, such as those receiving organ or bone marrow transplants, undergoing chemotherapy for cancer, recovering from major surgery, or suffering from HTV infection.
  • the antifungal therapy includes administration, typically parenteral administration, preferably intravenous administration, of a formulation of a pseudomycin, such as pseudomycin B, or a related antifungal agent and HP-CD, SBE-CD, or a like cyclodextrin over several days to halt the infection.
  • a pseudomycin such as pseudomycin B
  • HP-CD high-CD
  • SBE-CD high-CD
  • a like cyclodextrin cyclodextrin over several days to halt the infection.
  • reduction of symptoms of the infection includes reduction of fever, return to consciousness, and increased well being (e.g. the patient acts and feels better) of the patient.
  • symptoms are reduced by killing the fungus to eliminate the infection or to bring the infection to level tolerated by the patient or controlled by the patient's immune system.
  • compositions Including a Formulation of a Pseudomycin or Related Antifungal Agent and a Cyclodextrin
  • a pharmaceutical composition including a formulation of a pseudomycin, such as pseudomycin B, or a related antifungal agent and a cyclodextrin, such as SBE-CD or HP- CD can also include carriers, excipients, vehicles, and other additives.
  • the formulation can include additives such as various oils, including those of petroleum, animal, vegetable or synthetic origin, for example, peanut oil, soybean oil, mineral oil, and sesame oil.
  • Suitable pharmaceutical excipients include starch, cellulose, glucose, lactose, sucrose, gelatin, malt, magnesium stearate, sodium stearate, glycerol monostearate, sodium chloride, dried skim milk, glycerol, propylene glycol, water, and ethanol.
  • compositions can be subjected to conventional pharmaceutical expedients, such as sterilization, and can contain conventional pharmaceutical additives, such as preservatives, stabilizing agents, wetting, or emulsifying agents, salts for adjusting osmotic pressure, and buffers.
  • conventional pharmaceutical additives such as preservatives, stabilizing agents, wetting, or emulsifying agents, salts for adjusting osmotic pressure, and buffers.
  • Suitable pharmaceutical carriers and their formulations are described in Martin, "Remington's Pharmaceutical Sciences,"
  • compositions will, in general, contain an effective amount of the active compound together with a suitable amount of carrier so as to prepare the proper dosage form for proper administration to the host.
  • the compositions will be administered to a patient (human or other animal, including mammals such as, but not limited to, cats, horses and cattle and avian species) in need thereof, in an effective amount to inhibit the fungal replication.
  • the daily dosage as employed for adult human treatment will range from 5 mg to 5000 mg of active ingredient, preferably 50 mg to 2000 mg, which can be administered in 1 to 5 daily doses, for example, depending on the route of administration and the condition of the patient.
  • each unit will preferably contain 2 mg to 2000 mg of active ingredient, for example 50 mg to 500 mg.
  • the compound can be administered by intravenous infusion using, for example, 0.01 to 10 mg/kg/hr of the active ingredient.
  • the present invention also encompasses a kit including the present pharmaceutical compositions and to be used with the methods of the present invention.
  • the kit can contain a vial which contains a formulation of the present invention and suitable carriers, either dried or in liquid form.
  • the kit further includes instructions in the form of a label on the vial and/or in the form of an insert included in a box in which the vial is packaged, for the use and administration of the compounds.
  • the instructions can also be printed on the box in which the vial is packaged.
  • the instructions contain information such as sufficient dosage and administration information so as to allow a worker in the field to administer the drug. It is anticipated that a worker in the field encompasses any doctor, nurse, or technician who might administer the drug.
  • the present invention also relates to a pharmaceutical composition including a formulation of a pseudomycin, such as pseudomycin B, or a related antifungal agent and a cyclodextrin, and that is suitable for administration by injection.
  • a formulation of a pseudomycin, such as pseudomycin B, or a related antifungal agent and a cyclodextrin can be used for manufacturing a composition a pseudomycin, such as pseudomycin B, or a related antifungal agent and a cyclodextrin in a form that is suitable for administration by injection.
  • a liquid or solid formulation can be manufactured in several ways, using conventional techniques.
  • a liquid formulation can be manufactured by dissolving a pseudomycin, such as pseudomycin B, or a related antifungal agent and cyclodextrin in a suitable solvent, such as water, at an appropriate pH, including buffers or other excipients.
  • compositions containing one or more pseudomycin, lipodepsidecapeptide, or combinations thereof (including hydrates, solvates, and esters thereof) and a cyclodextrin (e.g., SBE-CD or HP-CD) may be used in the treatment of fungi in plants (in particular, V. albo-atrum, Rhizoctonia solani and F. oxysporum) either as a direct treatment or preventative treatment.
  • fungi in plants in particular, V. albo-atrum, Rhizoctonia solani and F. oxysporum
  • the infected plants are treated by injecting or spraying an aqueous suspension of the P. syringae antifungal agents into or onto the plant.
  • Means of injection are well-known to those skilled in the art (e.g., gouge pistol). Any means of spraying the suspension may be used that distributes an effective amount of the active material onto the plant surface.
  • the suspension may also include other additives generally used by those skilled in the art
  • P. syringae MSU 16H is publicly available from the American Type Culture Collection. Parklawn Drive, Rockville, MD, USA as Accession No. ATCC 67028.
  • P. syringae strains 25-B1, 7H9-1, and 67 HI were deposited with the American Type Culture Collection on March 23, 2000 and were assigned the following Accession Nos.: 25-B 1 Accession No. PTA- 1622
  • CD-I mice males were divided into groups of four and were given 0, 1, 5, 10, 25, or 50 mg /kg/day PSB-TFA as an intravenous injection (slow bolus) into a lateral tail vein.
  • the vehicle used for this study was saline for injection.
  • the potency of the trifluoroacetic acid salt of pseudomycin B (PSB-TFA) was adjusted to account for the trifluoroacetic acid present in the salt form.
  • the data collected included live phase (i.e., clinical observations, body weight, and mortality), clinical chemistry, limited organ weights, and limited histopathology (kidney, liver, heart, and injection site).
  • mice survived to the scheduled termination on day 7. However, each of the mice exhibited a severe adverse reaction at the site of injection. This began as marked swelling and darkening of the tail, typically occurring within about 6 to 8 hours after injection. The severity of the tissue reaction in all animals receiving a dose of > 10 mg/kg resulted in discontinuation of dosing after 2 to 5 doses. There were no significant clinical chemistry, gross pathology, or histopathology findings observed to indicate target organ effects other than evidence of severe adverse reaction at the injection site.
  • Pseudomycin B and related compounds were tested for their in vitro toxicity toward mammalian cells to evaluate whether toxicity was related to the structure of the compound.
  • Pseudomycin B and the related compound pseudomycin A (PSA) were tested at a concentration of 0.5 mg/mL for their effect on L6 skeletal muscle cells.
  • This in vitro muscle model has been demonstrated to correlate with in vivo parenteral antibiotic venous irritation.
  • Rosalki S.B. An Improved Procedure for Serum Creatine Phosphokinase Determination. J. Lab. Clin. Chem. 69: 696-705 (1967); D.M. Hoover et al., Fundamental and Applied Toxic. 14: 589-597 (1990); Mosmann T., Rapid Colorimetric Assay for Cellular Growth and Survival, J. Immunol. Method 65: 55-63 (1983).
  • Toxicity was determined by monitoring the levels of creatine phosphokinase (CPK) and MTT reductase activities in the cells by standard methods.
  • This study evaluated formulations including pseudomycin B in an acetate buffer, in a microemulsion, and with SBE-CD.
  • Example 1 Animals were as described above in Example 1. The doses selected were based on the adverse effects observed in Figure 1. The low dose was 5 mg/kg, which, in Example 1, caused slight tissue injury but allowed dosing for 7 full days. The high dose was 25 mg/kg, which, in Example 1, resulted in severe tissue injury and restricted dosing.
  • This study tested three formulations acetate buffer, a microemulsion vehicle, and a sulfobutylether- ⁇ -cyclodextrin (SBE-CD) vehicle at each of these two doses of PSB-TFA.
  • SBE-CD sulfobutylether- ⁇ -cyclodextrin
  • the microemulsion vehicle includes 1.7 wt-% propylene glycol, 3.4 wt-% emulphor EL, 1.4 wt-% phospholipon 90, 3.5 wt-% fractionated coconut oil in 0.05M acetate buffer with 1.75 wt-% dextrose, at pH 4.5.
  • SBE-CD was obtained from Cydek, Inc., 12980 Metcalf Ave., Suite 470, Overland Park, Kansas 66213 and was prepared as 2 wt-% Sulfobutylether- ⁇ -cyclodextrin in 0.05M acetate buffer with 1.75 wt-% dextrose, pH 4.5.
  • a SBE-CD stock solution is prepared by mixing glacial acetic acid with deionized water and NaOH to achieve a solution that is 0.05 M in acetic acid and at pH 4.5. Solid dextrose and SBE-CD are dissolved in the acetic acid buffer to the desired concentration. Then pseudomycin B is added to achieve the desired concentration and the solution is stirred until the pseudomycin dissolves.
  • This study evaluated formulations including pseudomycin B in an acetate buffer, with SBE-CD, with HP-CD, with gamma-CD, in an emulsion, in a Povidone formulation, and in a micelle formulation.
  • Example 1 Animals were as described in Example 1 and were used in groups of three. Pseudomycin B was administered at a dose of 25 mg/kg/day for 7 days by intravenous bolus administration into a lateral tail vein at 10 mlJkg.
  • the vehicle for Group 1 (positive control) was acetate buffer alone since this has been shown (Example 1 and Example 2, Study 1) to result in marked adverse reactions.
  • the vehicle for Group 2 (negative control) was acetate buffer containing 2 wt-% SBE-CD which has been shown (Example 2, Study 1) to completely ameliorate the adverse effects observed when pseudomycin B is administered in acetate buffer.
  • the other vehicles are as follows: Group 3, 2 wt-% hydroxypropyl- ⁇ -cyclodextrin; Group 4, 2 wt-% gamma-cyclodextrin; Group 5, lyposin LI emulsion, which includes 10% soybean oil and 10% safflower oil; Group 6, Povidone K12 emulsion, which includes Polyvinylpyrrolidone 2000-3000 m.w.; and Group 7, 0.5 wt-% polysorbate 80 micelle preparation, which includes dextrose, polysorbate 80, pH 4.5 acetate buffer.
  • the results of this study confirmed the irritation potential of pseudomycin B when administered in acetate buffer.
  • Group 1 showed swelling and discoloration of the tail after the first dose which impaired dosing on the second and third day.
  • SBE-CD prevented the adverse reaction observed in Group 1.
  • Group 2 received 7 daily doses of 25 mg/kg pseudomycin B with no evidence of adverse reactions.
  • Groups 3 and 4 formulations including hydroxypropyl- ⁇ -cyclodextrin or gamma-cyclodextrin, also showed protection from the adverse reactions caused by pseudomycin B.
  • the Liposin LI emulsion provided only partial protection. Although the animals were dosed daily for 7 days, tail swelling impaired dosing on the last 3 days of the study.
  • the Povidone K12 complex and 0.5 wt- % Polysorbate 80 micelle preparation provided no protection compared with acetate buffer alone.
  • Study 3 This study evaluated formulations including pseudomycin B in saline for injection at two pHs, in pluronic F68, in solutol, and in polysorbate.
  • mice were female CD1 mice handled according to established protocols. The mice were divided into groups of three. Pseudomycin B was administered at a dose of 25 mg/kg/day for 7 days by intravenous bolus administration into a lateral tail vein at 10 mlJkg.
  • the vehicle for Group 2 was 0.9 wt-% NaCl (saline for injection) at pH 4.5.
  • the vehicle for Group 3 was 0.9 wt-% NaCl (saline for injection) at pH 6.5.
  • the vehicle for Group 4 was 0.9 wt-% NaCl in 0.05 wt-% Pluronic F68, which includes propylene oxide and ethylene oxide copolymers at various m.w. and HLB at pH 6.5.
  • the vehicle for Group 5 was 0.9 wt-% NaCl in 0.5 wt-% Pluronic F68 at pH 6.5.
  • the vehicle for Group 6 was 0.9 wt-% NaCl in 0.05 wt-% Solutol, which includes 70% polyglycol ester of 12- hydroxystearate and 30% polyethylene glycol at pH 6.5.
  • the vehicle for Group 7 was 0.9 wt-% NaCl in 0.05 wt-% polysorbate 20 at pH 6.5.
  • the doses of pseudomycin B used for this rat study were 0, 1, 10, or 50 mg/kg/day for 14 days administered as an intravenous bolus dose.
  • the SBE-CD formulation was 2 wt-% and the dose volume used was 5 mLJkg.
  • Toxicological parameters monitored by standard methods included body weights, clinical observations, mortality, hematology, clinical chemistry, limited pathology (liver, kidney, heart, and injection site), and bone marrow micronucleus (as a preliminary assessment of genetic toxicity).
  • the high-dose animals grossly demonstrated marked tail vein irritation. This was associated with decreased body weight and a histopathology finding of injection site inflammation and venous necrosis. Liver and kidney weights were also increased in these animals. There were no such findings in the mid- and low-dose animals.
  • the bone marrow micronucleus test was negative in the low- and mid-dose animals (bone marrow micronucleus was not evaluated in the high-dose group due to the early termination). The only other finding was the histopathologic observation of slight vacuolization of the renal tubule observed in the high-dose animals.
  • Example 2 Although the study reported in Example 2 demonstrated that formulation with SBE-CD ameliorated the adverse effects of injection of pseudomycin B, adverse effects were observed with an SBE-CD formulation in the present study. However, the dose amount and concentration of pseudomycin B are significantly higher in the present study. This study evaluated doses of pseudomycin B up to 50 mg/kg, which is twice the dose tested in the studies reported in Example 2, which was 25 mg/kg. Furthermore, the present study injected this doubled dose of pseudomycin B in a volume only one half that used in the studies reported in Example 2. Thus, the concentration of pseudomycin B in the formulation increased 4-fold. The concentration of SBE-CD remained constant at 2 wt-% in these studies, so the concentration of pseudomycin B increased 4-fold relative to the concentration of SBE-CD.
  • Example 5 Increasing the Concentration of SBE-CD at a High Dose of Pseudomycin B Ameliorates Adverse Effects This study investigated toxicities of high dose pseudomycin B with an increased amount of SBE-CD and determined that higher concentrations of the cyclodextrin ameliorated the adverse effects of high dose pseudomycin B seen in Example 4.
  • Example 4 Materials and Methods Animals were as described in Example 4. The doses of pseudomycin B used for this study were 0, 25, or 50 mg/kg/day administered for 14 days as an intravenous slow injection using a computer controlled pump to minimize test article extravasation into surrounding tissue.
  • the vehicle used for this study was 4 wt-% SBE-CD and the dose volume was 10 mLJkg. These increases in the concentration of SBE-CD and the dose volume this adjusted the ratio of pseudomycin B to SBE-CD back to what it was in the studies reported in Example 3.
  • the control group received 4 wt-% SBE-CD alone. Body weights, clinical observations, mortality, hematology, clinical chemistry, limited pathology (liver, kidney, heart, and injection site), and bone marrow micronucleus were monitored by standard methods. Results
  • liver also emerged as a potential target organ with evidence of liver enzyme leakage and hepatocellular injury and death. Both of these effects were seen only at the highest dose of 50 mg/kg/day. Increased kidney weight and slight vacuolization of the renal tubules was seen at both 25 and 50 mg/kg/day and may indicate renal effects of pseudomycin B.
  • the doses of pseudomycin B used for this rat study were 5 and 25 mg/kg administered once as an intravenous bolus dose.
  • the SBE-CD formulation was 2 wt-% and the dose volume used was 5 mlJkg.
  • Parameters monitored by standard methods included area under the curve for the duration of detectable levels (AUC), half-life, and
  • the plasma concentrations of pseudomycin B were similar after a 5 mg/kg dose in either sodium acetate buffer or in a formulation with 2 wt-% SBE-CD.
  • the presence of 2 wt-% SBE-CD did not affect the plasma pharmacokinetic profile of pseudomycin B in comparison with acetate buffer.
  • the formulation did not change any of the measured pharmacokinetic parameters.
  • increasing the dose of pseudomycin B from 5 to 25 mg/kg resulted in a near proportional increase in C maX and AUC.
  • the plasma half-life of pseudomycin B was independent of dose examined.
  • Measurable plasma concentrations of pseudomycin B were present for 24 hours after the administration of dose.
  • Example 7 In vivo Toxicological Evaluation of an HP-CD and a Gamma-Cyclodextrin Formulation of Pseudomycin B
  • Table 8 Results of Administering Hydroxypropyl- ⁇ -Cyclodextrin and Gamma- Cyclodextrin Formulations at Two Concentrations of Pseudomycin B.
  • Shading indicates no effect on the indicated parameter Shading indicates the indicated parameter was not measured due to early termination
  • the gamma-CD vehicle did not provide adequate protection from adverse effects of pseudomycin B in this study. After only the first dose swelling and discoloration of the tail was noted. This became severe enough to prevent dosing by day 2.
  • the hydroxypropyl- ⁇ -CD vehicle provided protection from adverse effects of pseudomycin B.
  • daily doses of the hydroxypropyl- ⁇ -CD formulation were administered for the full 2-weeks of the study.
  • Adverse effects on the erythron component, liver, kidney, and lipid metabolism are consistent with previous observations following 2 weeks of dosing at the 50 mg/kg level using a SBE-CD-based vehicle (Example 5).
  • SBE-CD-based vehicle Example 5
  • gamma-CD did not provide protection from the adverse effects of injection of pseudomycin B. Hydroxypropyl- ⁇ -CD protected these animals from the adverse effects of injection of pseudomycin B.

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