CN110408596A - 基于CRISPR/Cas9基因编辑改造的CHO细胞株及其制备方法 - Google Patents
基于CRISPR/Cas9基因编辑改造的CHO细胞株及其制备方法 Download PDFInfo
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Abstract
本发明提供基于CRISPR/Cas9基因编辑改造的CHO细胞株及其制备方法,选取二硫键折叠相关的巯基氧化酶HsQSOX1b和细胞凋亡相关的生存素Survivin作为目的基因,设计成外源表达盒EC#1和EC#2,利用新型的CRISPR/Cas9的基因编辑技术,将其整合到CHO细胞的特定基因位点。本发明利用CRISPR/Cas9基因编辑技术,将人HsQSOX1b和Survivin基因对CHO‑K1细胞进行精准编辑,建立了快速高效的宿主细胞改造技术平台,并获得抗凋亡能力强、催化二硫键效率与蛋白表达质量高的单克隆细胞株,为改造符合工业生产要求的抗体高效细胞株提供理论与技术支撑。
Description
技术领域
本发明涉及基因编辑技术领域,更具体地讲,涉及一种以HsQSOX1b和Survivin作为目的基因的基于CRISPR/Cas9基因编辑技术改造CHO细胞。
背景技术
近年来,以抗体为代表的治疗性重组蛋白已成为生物药物行业的主导产品,临床需求巨大。自1986年首个在CHO细胞中生产的重组蛋白人组织纤溶酶原激活物(humantissue plasminogen activator,tPA)获得批准以来,CHO细胞已成为外源蛋白生产最主要的表达宿主。然而在重组蛋白的工业化生产过程中,目标蛋白表达的质和量较低,应对不利环境的抵抗能力较弱等瓶颈一直影响着重组蛋白生产的经济效益和临床广泛应用。随着CHO及CHO-K1细胞的基因组的测序及组学技术的发展,大批基因的结构和功能将被陆续得到解析,这为基因改造提供了足够的靶位点,即可以选择特定的靶基因,实现针对靶基因的靶位点进行改造,建立稳定和新颖的宿主细胞。
将目的基因整合进CHO细胞通常依据两种整合方式:随机整合和位点特异性整合。传统方式的随机整合是通过逐级增加药物浓度迫使细胞获得外源质粒整合,同时随着药物浓度的增高,标记基因的表达带动目的基因的表达而获得高表达的细胞株。但是随机整合的盲目性大,许多位点是不表达和低表达的,需要经过漫长的药物梯度筛选才能获得高产的单克隆株,而且随机整合往往会因为位置效应导致外源基因的沉默。不同于随机整合,位点特异性整合选择了明确的整合位点实现目的基因的整合。其主要的方式有Cre-LoxP重组酶系统、核基质附着区(MAR或SAR)、泛染色体开放元件(UCOE)和人工染色体。以上这些方法能够使目的基因的整合更加具有目的性,但是往往都依赖于碱基序列特异性的染色体区域,能够在一定程度上拓宽目的基因整合基因组的应用范围。此外,不同于上述几种位点特异性整合方法的是,基于核酸内切酶发展起来的基因编辑技术能够极大的扩宽基因组改造的范围,从而加速宿主细胞改造进程。目前基因编辑技术主要可以分为三代,前两代是依赖Fok I限制性内切酶发展起来的ZFNs和TALENs基因编辑技术;第三代即为目前发展迅速的依赖Cas蛋白的CRISPR/Cas基因编辑技术。ZFNs和TALENs的基因编辑技术是将DNA结合蛋白与Fok I内切酶结合,需要依赖蛋白质工程进行设计,能够对靶基因进行敲除以及研究特定的功能基因。这两种方法均能够进一步扩大了基因编辑的范围,但是设计复杂,价格比较昂贵,一定程度限制其大规模应用。
CRISPR/Cas9是最近利用细菌和古生菌的免疫系统开发而来的,是基于RNA介导的核酸内切酶(RNA-guided engineered nucleases,RGENs)的基因编辑技术。依赖于碱基互补配对原则实现基因组的定点修饰,比蛋白质识别特定碱基序列的作用力更强、更稳定;而且设计简便,快速。此外,进行基因编辑的位点得到了极大的丰富,理论上每隔108个碱基即可出现一个CRISPR/Cas9的潜在切割位点。根据CRISPR位点上游Cas基因保守性差异将CRISPR/Cas系统主要分为三类:I型、II型和III型。目前研究最为透彻的是II型CRISPR/Cas系统,其组成较为简单,通常由单个Cas酶组成,因而可以简便、快速的被开发应用。其中,CRISPR/Cas9系统是应用最为广泛的II型系统,核心部分是Cas9蛋白和向导RNA(gRNA)。Cas9酶含有两个能够发挥切割作用的功能域RuvC和HNH。当CRISPR/Cas簇在引导区的作用转录出pre-crRNA时,与Repeat区互补的反式激活crRNA(Trans-activating crRNA,tracrRNA)也转录出来,然后激活Cas9和RNaseIII核酸酶将pre-crRNA加工形成短的crRNAs,并组装形成crRNA、tracrRNA和Cas9复合体,其中crRNA能够识别与之互补的DNA链并与之结合形成RNA-DNA杂合链,然后Cas9酶的RuvC和HNH结构域分别对DNA两条链进行切割,前者切割与crRNA非互补链,后者切割互补链,使DNA双链产生断裂,形成DSBs。Cas9的剪切位点位于crRNA互补序列下游邻近的PAM区(Protospacer Adjacent Motif)的5’-NGG-3’特征区域中的NGG位点前三个碱基。
巯基氧化酶QSOX1的二硫键转移和形成功能是由具有氧化还原活性的半胱氨酸残基介导的,典型的模式为Cys-X-X-Cys。在QSOX1中这种双半胱氨酸基序在硫氧还蛋白结构域中存在,类似于PDI的氧化还原活性结构域。另一个存在于发挥巯基氧化功能的FAD结合域,类似于线粒体酶Erv1。人体中具有两个QSOX基因,分别为QSOX1和QSOX2。其中QSOX1基因转录的mRNA经不同的剪接方式形成3314bp和2588bp的两种剪接体,分别编码747个氨基酸的QSOX1a(L)(82kDa)和604个氨基酸的QSOX1b(S)(66kDa)。研究表明,HsQSOX1b是分泌型的,体外研究发现其具有二硫键形成功能,在氧化三(2-羧乙基)膦(TCEP),DTT等含有硫醇结构的物质时,酶活较Ero1和Erv家族的巯基氧化酶高上百倍。因此,选择酶学功能鉴定清楚的HsQSOX1b并将其定位到内质网中,研究其在活细胞内质网中的二硫键形成能力。此外,研究发现Survivin是抗凋亡蛋白家族的最强者,其结构由单个baculovirus IAP repeat(BIR)结构域和一个扩展的α螺旋卷曲组成。Survivin可以直接抑制Caspase-3/7活性来抑制细胞凋亡,也可以抑制由Fas(CD95),Bax,抗癌药物引起的细胞凋亡过程,显现出广泛的抗凋亡能力。而基于Survivin蛋白的细胞改造方面的研究还很少,因此我们在构建含有HsQSOX1b表达盒时将Survivin一起设计到表达盒中,用于研究内质网中蛋白质量控制,同时探究Survivin在CHO-K1细胞中的抗凋亡性能。
发明内容
本发明的第一个目的在于提供一种基于CRISPR/Cas9基因编辑技术改造CHO细胞的制备方法。
本发明的第二个目的在于提供利用基于CRISPR/Cas9基因编辑技术改造CHO细胞的制备方法制备获得的单克隆细胞株。
为了实现本发明第一个目的,本发明提供了一种基于CRISPR/Cas9基因编辑技术改造CHO细胞的制备方法,其特征在于,选取二硫键折叠相关的巯基氧化酶HsQSOX1b和细胞凋亡相关的生存素Survivin作为目的基因,设计成外源表达盒EC#1和EC#2,利用新型的CRISPR/Cas9的基因编辑技术,将其整合到CHO细胞的特定基因位点。
作为一个优选方案,表达盒EC#1和EC#2的串联组合方式分别为CMV(E+P)+eGFP+HsQSOX1b-KDEL+BGH pA和CMV(E+P)+eGFP+HsQSOX1b-KDEL+T2A+Survivin+BGH pA。
为了实现本发明第二个目的,本发明提供了利用基于CRISPR/Cas9基因编辑技术改造CHO细胞的制备方法制备获得的单克隆细胞株,其特征在于,所述单克隆细胞株HsQSOX1b和Survivin过表达。
巯基氧化酶HsQSOX1b的序列:ATMRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFFARNNEEYLALIFEKGGSYLAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIYMADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKRQKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNIILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEGPELI(SEQ ID NO:1)。
生存素Survivin的序列:MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD(SEQ ID NO:2)。
本发明选取二硫键折叠相关的巯基氧化酶HsQSOX1b和细胞凋亡相关的生存素Survivin作为目的基因设计成外源表达盒EC#1/2。以期证实HsQSOX1b能够在哺乳动物细胞中发挥二硫键折叠功能的同时,达到减少蛋白质在内质网聚集而引起的内质网应激,提高内质网的蛋白质量控制能力。同时,研究Survivin赋予CHO细胞抗凋亡的特性,进一步延长细胞的重组蛋白生产周期。
本发明利用新型的CRISPR/Cas9的基因编辑技术将HsQSOX1b和Survivin整合到CHO细胞的特定基因位点。RISPR/Cas9系统是目前应用最为广泛的亚型,核心部分是Cas9蛋白和向导RNA(gRNA)。Cas9酶含有两个能够发挥切割作用的功能域RuvC和HNH。当CRISPR/Cas簇在引导区的作用转录出pre-crRNA时,与Repeat区互补的反式激活crRNA也转录出来,然后激活Cas9和RNaseIII核酸酶将pre-crRNA加工形成短的crRNAs,并组装形成crRNA、tracrRNA和Cas9复合体,其中crRNA能够识别与之互补的DNA链并与之结合形成RNA-DNA杂合链,然后Cas9酶的RuvC和HNH结构域分别对DNA两条链进行切割,前者切割与crRNA非互补链,后者切割互补链,使DNA双链产生断裂,形成DSBs。Cas9的剪切位点位于crRNA互补序列下游邻近的PAM区的5’-NGG-3’特征区域中的NGG位点前三个碱基。
本发明的优点在于,目前CHO细胞是应用最为广泛的哺乳动物表达宿主,但是工业化生产过程中重组蛋白表达的质量较低,应对不利环境的抵抗能力较弱等瓶颈影响着重组蛋白生产的经济效益和临床广泛应用。针对CHO细胞的改造主要依靠培养基与代谢途径优化,而难于从根上进行多基因精准编辑,强化其整体效能。本发明利用CRISPR/Cas9基因编辑技术,将人HsQSOX1b和Survivin基因对CHO-K1细胞进行精准编辑,建立了快速高效的宿主细胞改造技术平台,并以GLuc作为模式蛋白对单克隆株的蛋白生产性能评价,获得抗凋亡能力强、催化二硫键效率与蛋白表达质量高的单克隆细胞株,为改造符合工业生产要求的抗体高效细胞株提供理论与技术支撑。本发明的HsQSOX1b和Survivin过表达的单克隆细胞株改造具有快速简便、便宜、易于设计和高效的特点。
附图说明
图1为设计和构建的两个外源表达盒示意图。
图2为构建表达盒中各DNA片段电泳图,其中,泳道1为CMV(E+P)+signalpeptideof HsQSOX1b,泳道2为EGFP,泳道3为HsQSOX1b30-604+KDEL,泳道4为BGH polyA。
图3为四个质粒转染CHO-K1细胞的荧光倒置显微镜下和白光下细胞图,其中,左上、左下分别为CHO-K1细胞转染Q1和Q2在荧光倒置显微镜和白光下的细胞图,右上和右下分别是CHO-K1细胞转染B1和B2在荧光倒置显微镜和白光下的细胞图。Scale bar=100μm。
图4为T7E1酶切试验凝胶电泳结果,其中红色箭头表示经T7E1酶切后形成的两条子带,四个质粒转染CHO-K1细胞得到的indels(%)分别为9.1%、16.7%、13.3%和19.1%。
图5为流式细胞仪分析转共转染整合效率,其中EC#1整合的阳性细胞为5.18%,EC#2整合的阳性细胞为3.85%。
图6为eGFP阳性单克隆细胞株中HsQSOX1b和Survivin表达情况。
图7为激光共聚焦扫描电镜下的细胞染色图,左上为内质网探针ER-Tracker Red染色显示的细胞内质网轮廓,右上为细胞表达绿色荧光蛋白的分布图,左下为染核试剂Hoechst 33342染色获得的核分布图,右下为前三张图片组合下的细胞图。Scale bar=2μm。
图8为转染EC#1和EC#2的稳定单克隆株EC#1-C1和EC#2-B6,图第一列和第二列分别为单克隆细胞株EC#1-C1在两种不同倍镜下的白光和荧光图,第三列和第四列是单克隆株EC2-B6在两种不同倍镜下的白光和荧光下细胞图。
图9为不同细胞株中GSH/GSSG与GSH/tGSH比值图,其中将对照组CHO-K1细胞的GSH/GSSG和GSH/tGSH比值分别计为100%,单克隆细胞EC#1-C1与单克隆细胞株EC#2-B6的GSH/GSSG的比值分别为40.3%和70.4%(*P<0.05),两株单克隆细胞的GSH/tGSH比值分别为91.2%和97.3%(*P<0.05)。
图10为XBP1剪接试验,其中两株单克隆细胞EC#1-C1和EC#2-B6的XBP1t表达量分别是管家基因β-actin的0.564和0.565倍,XBP1u分别是管家基因β-actin的0.306和0.397倍,而根据XBP1t和XBP1u的Ct值计算得到的XBP1s的表达量分别为管家基因β-actin的2.629和1.343倍。两株单克隆细胞株的XBP1s/XBP1t比值分别为4.665和2.378。
图11为诱导细胞凋亡及结果检测,图中数值表示细胞的凋亡比率,试验组和对照组分别进行三个平行,数值显示mean±SD,且均以SPSS软件进行双侧t检验,*P<0.05。NC指阴性对照,PC指阳性对照。
图12为无血清培养96h后细胞活性,其中以对照组CHO-K1细胞进行的双侧t检验结果,**P<0.01,n=6。
图13为不同细胞株的荧光素酶测定结果图,其中以对照组CHO-K1细胞进行的双侧t检验结果,*P<0.05,**P<0.01,n=3。
具体实施方式
以下,结合具体实施方式对本发明的技术进行详细描述。应当知道的是,以下具体实施方式仅用于帮助本领域技术人员理解本发明,而非对本发明的限制。
实施例1.基于CHO-K1细胞的sgRNA-Cas9与表达盒设计、构建及其功能验证
试剂与试剂盒:Premix Taq DNA polymerase,Pyrobest DNA polymerase,限制内切酶(Hind III、BamH I),DNA A-Tailing Kit,pMDTM19-T Vector CloningKit,DNAmarker购置于宝生物工程有限公司(大连)。核酸内切酶Bbs I和T4DNA ligase购置于NEB。质粒提取试剂盒、血液/细胞、组织基因组DNA提取试剂盒、EasyGene快速重组克隆试剂盒、DNA凝胶回收试剂盒和UniversalDNA纯化回收试剂盒购置于Tiangen。Lipofectamine 2000购置于Thermo FisherScientific。胰化蛋白胨、酵母提取物购置于Oxoid公司(英国)。Ampicillin购自生工生物工程股份有限公司(上海)。F-12和Opti-MEM培养基、胰蛋白酶购置于Gibco。Penicillin-streptomycin(100×)购置于Solarbio。FBS购置于Hyclone。其他的生化试剂属于国产常规的分析纯试剂。
质粒与菌株:质粒pSpCas9(BB)-2A-GFP(PX458)和pSpCas9(BB)-2A-Puro(PX459)V2.0(Addgene Plasmid#48138和#62988);质粒pUC19(Tiangen);质粒pETsumo和pCDNA3.1(Invirogen,USA);E.coli DH5α(Invirogen,USA)作为质粒扩增菌株;细胞株CHO-K1细胞(中科院细胞库)。
试剂配制:
LB液体培养基:称取胰化蛋白胨10g、酵母提取物5g、氯化钠10g,用去离子水定容到1L,121℃高压灭菌20min,常温保存。
LB固体培养基:称取胰化蛋白胨1g、酵母提取物0.5g、氯化钠1g,琼脂粉1.5g,用去离子水定容到100mL,121℃高压灭菌20min,常温保存。
蓝白斑筛选用LB固体培养基:每100mL的LB固体培养基中依次加入100μL 100mMIPTG、200μL 20mg/mL X-Gal、100μL 100mg/mL Amp左侧对应浓度试剂,混匀制成平板封口膜封口4℃保存备用。
氨苄青霉素(100μg/mL):称取1g,溶于10mL ddH2O,使用0.22μm的无菌滤膜过滤除菌,分装,-20℃保存。
TAE电泳缓冲液(50×):称取Tris碱242g,量取冰醋酸57.1mL,0.5MEDTA(pH8.0)100mL,加去离子水定容至1L。
琼脂糖凝胶(1%):称取0.7g琼脂糖,加入TAE(1×)70mL,加热溶解,待冷却60℃左右,加入Gel Red核酸染液(100×)1mL,插好梳子,倒胶。
DPBS溶液:称取NaCl 8.0g,KCl 0.2g,KH2PO4 0.2g,Na2HPO4 1.42g。将上述试剂充分混匀并定容到1L的超纯水中,高压蒸汽灭菌25min,常温保存备用。
细胞培养基:将100mL F-12培养基,10mL FBS和1mL(100×)青链霉素三种成分混匀,4℃保存。
表达盒EC#1和EC#2的构建
引物设计:
表1.1靶向QSOX1和BIRC5合成的sgRNA寡核苷酸
PCR反应体系:
表1.2表达盒构建中DNA片段PCR扩增反应体系
PCR反应条件:
表1.3表达盒构建中DNA片段PCR扩增反应条件
PCR扩增各部分目的条带后,按表1.4所示将各部分DNA片段加入到PCR管中进行连接反应,将PCR管置于50℃的水浴锅中反应15min(对于3个以上DNA片段重组时,设计引物的重叠序列需要≥20nt,且反应时间延长至1h)。
表1.4各DNA片段重组克隆反应体系
待连接反应结束后,瞬时离心PCR反应管并将离心管置于冰上,进行后续的转化反应。次日,挑取单克隆菌落于5mL的含有Amp的LB液体培养基中培养16h,之后取1mL菌液于无菌的EP管中送上海睿迪生物科技有限公司进行测序,测序以pUC19的通用引物M13F和M13R进行(由公司提供),检测组装的表达盒是否引入突变。
CHO-K1细胞的培养、转染以及sgRNA-Cas9载体与表达盒EC#1/2的功能验证
1)CHO-K1细胞的复苏:细胞的复苏遵循快速复苏的原则,从液氮中取出的冻存管应当迅速取出,置于37℃水浴中,快速地摇动冻存管使细胞受热均匀,待细胞溶解至还剩一小块冰时,加入少量预温的新鲜培养基于冻存管中上下缓慢吹打细胞混合均匀并将细胞移至T-25的培养瓶中,加入4mL预温的新鲜F-12培养基混合均匀,置于37℃,含有5%CO2的培养箱中培养6h左右,待细胞贴壁后,更换新培养液即可。
2)CHO-K1细胞的换液、传代
细胞的培养需要在无菌的环境进行,因此在操作之前需要紫外灭菌30min以上,同时需要将培养基,胰酶等放入培养箱中预热。进行操作时,时刻注意无菌操作的要求,穿好实验服,带好手套,打开超净台风机,用75%的酒精棉球擦拭操作台面,待风机风速稳定后进行操作。
CHO-K1细胞的换液:CHO-K1细胞的培养通常在T-25培养瓶中进行。换液时将培养瓶中已有的培养基倒入废液缸,以DPBS洗两遍细胞,每次2-3mL,然后加入4mL的预温的新鲜的F-12培养基,然后将细胞重新放回到培养箱中培养。
CHO-K1细胞的传代:在倒置显微镜观察细胞密度,当细胞达到80-90%的汇合度时,倒掉培养瓶中已有的培养基,以DPBS洗涤2次,并用长枪头将培养瓶中残留的DPBS吸除,加入500μL胰蛋白酶消化细胞,边水平前后缓慢小幅度转动培养瓶使胰蛋白酶均匀接触细胞,边在倒置显微镜下观察细胞。(对于不同的细胞消化时间和温度有所不同,CHO-K1细胞通常室温消化1min即可)待细胞变圆后,立即加入2mL已预温的F-12培养基终止胰蛋白酶消化过程,并用无菌的吸管吹打细胞至单细胞悬液,然后将细胞移至1.5mL的无菌EP管中,1000rpm离心10mim。离心结束后,取适量细胞稀释并以血球计数板计数,然后按照比例传代,每个培养瓶接种1.2×105个细胞。对于CHO-K1细胞通常以1:2-4进行传代。
3)CHO-K1细胞的冻存
CHO-K1细胞的冻存:同细胞传代步骤,在1000rpm离心10min结束后,以移液枪轻轻吸去上清,加入1mL的细胞冻存液重悬细胞并将细胞悬液移入冻存管中,拧紧盖子,再以封口膜封口,并标记细胞名称、日期和保存人姓名。细胞冻存遵循缓慢降温的原则,将冻存管先置于4℃冰箱30min,然后移入-20℃冰箱1-2h,再移入-80℃过夜,最后移入液氮中保存。
4)细胞转染
细胞转染主要分为单个sgRNA-pSpCas9载体转染和sgRNA-pSpCas9与EC#1/2共转染。转染试剂以Lipofectamine2000进行,因不同的细胞系,转染试剂与质粒DNA的最佳配比不同,故我们进行了预实验,选取质粒(μg):Lipofectamine2000(μL)为1:2-4的条件进行实验,确定质粒和Lipofectamine2000的最佳转染比例。对于CHO-K1细胞,最终确定质粒(μg):Lipofectamine2000(μL)以1:3的配比进行转染实验。本实验以构建好的sgRNA1-QSOX1-pX458(Q1),sgRNA2-QSOX1-pX458(Q2),sgRNA1-BIRC5-pX458(B1)和sgRNA2-BIRC5-pX458(B2)四个质粒转染CHO-K1细胞,分别靶向QSOX1和BIRC5上两个gDNA靶位点,并以pX458空载作为对照。
5)sgRNA-Cas9载体在CHO-K1细胞发挥酶切活性验证
CHO-K1基因组的提取:基因组的提取包括两种方法:其一:对于培养瓶和6孔板中的细胞以天根血液/细胞、组织基因组DNA提取试剂盒,使用说明和提取流程参见官方说明书进行,最后以微型核酸分析仪定量。细胞处理步骤简述如下:以DPBS系两遍后,加入适量的胰蛋白酶消化1min左右,待细胞变圆后,移去胰酶,加入500μL DPBS吹打细胞形成单细胞悬液,再将细胞移至1.5mL的EP管中,1500g离心5min收集细胞沉淀,以500μL DPBS重悬细胞,洗一遍后,尽量去除DPBS,以试剂盒提取基因组DNA。其二:对于96孔板和24孔板中少量细胞其基因组参照QuickExtract DNA ExtractionSolution进行,该溶液可以直接提取基因组作为PCR的模板,基本操作流程为以96孔板计算,每孔加入10μL的QuickExtractDNAExtraction Solution反复吹打细胞,使细胞悬浮,然后将细胞悬液移入PCR管中,进行65℃,15min,68℃,15min和98℃,10min的程序进行处理。最后取1-2μL的反应产物直接作为PCR的模板。
特异性PCR引物设计:引物设计以Primer-Blast进行设计,网址信息:https://www.ncbi.nlm.nih.gov/tools/primer-blast/。特异性的引物合成后经PCR验证特异性方可用于后续实验验证。引物见表1.5。
表1.5 T7E1酶切试验所用引物表
PCR目的片段以及跑胶纯化回收目的片段:根据表1.5中所列引物,以KOD-FX高效率高保真酶进行sgRNA位点的基因组目的片段扩增。反应所用体系以表1.2做相应调整,反应程序以Touchdown PCR进行,见表1.6。
表1.6降落PCR扩增sgRNA靶位点目的片段反应程序
PCR结束后,取5μL PCR产物进行2%的琼脂糖凝胶电泳,出现目的条带后,将全部产物跑胶纯化,纯化以QIAquick Gel Extraction Kit进行回收,步骤按照试剂盒说明书进行,纯化后以微量核酸分析仪进行定量。纯化的PCR目的片段进行变性,复性处理;T7E1酶切反应。
6)eGFP阳性单克隆细胞株的获得以及表达盒整合情况验证
表达eGFP的阳性单克隆细胞株的获得:主要有两种方法:其一:以流式细胞仪进行,依据FACS获得。共转染的CHO-K1细胞传代两到三代后,以以下流程进行流式分选:①FACS培养基:培养基以无酚红的培养基或者DPBS代替含有酚红的培养基,培养基中必须加入青链霉素以防止污染。②铺板:在96孔板中加入100μL含有青链霉素的上述培养基,根据要收集的细胞数量铺相应的96孔板。(因为进行流式分选时许多细胞会耐受不了机械和电压压力,即使很多存活的细胞状态也会受到很大影响,故需要铺足量的96孔板以获得足够的单克隆阳性细胞。)③细胞准备:以DPBS洗细胞两次,加入适量的胰蛋白酶进行消化,(胰蛋白酶不应过量,能够轻轻铺满细胞表层即可)把握好消化时间,待细胞变圆后立刻加入预温的FACS培养基,轻轻吹打细胞形成单细胞悬液。④以室温200g离心5min,移取培养基,以200μL的FACS培养基重悬细胞,并用400目的细胞滤网过滤细胞,除去聚集成团的细胞,确保形成单细胞悬液,分选前将细胞置于冰上。⑤上机进行分选,过程中时刻注意无菌操作,将单克隆细胞分到②中的96孔板中。分选结束后,将96孔板放回到培养箱中。⑥将孔板置于培养箱中培养2-3周,等待细胞扩增形成细胞团。5d后往每孔中补加100μL的预温的完全培养基。可以根据细胞生长情况没3-5d换液。⑦培养一周后进行倒置显微镜镜检,标记空孔和非单细胞孔。⑧待细胞长到60%的汇合度时,在荧光倒置显微镜下镜检,标记eGFP阳性的单细胞孔。同时进行传代,直接吹打细胞使其分散,将30%的细胞转移到新的复制板中,剩余70%的细胞以QuickExtract DNAExtraction Solution提取其基因组记性junction PCR验证。其二:稀释分离法。在方法一的基础上,步骤⑤的FACS分选结束后,调整程序进行eGFP阳性富集,收集阳性最强的那部分细胞。大约收集5×103-104的细胞,并将细胞置于6孔板中进行培养。48h之后根据方法一中的方法将细胞制成单细胞悬液并以血球计数板对细胞进行计数,然后根据细胞计数结果取适量细胞将其稀释成0.5cell/100μL,最后将细胞悬液加入到96孔板中并放回培养箱培养。一周后,镜检单克隆孔,补加新鲜培养基。按照方法一中所述进行镜检eGFP阳性克隆株、传代及鉴定等后续实验。
获得表达表达eGFP的阳性单克隆细胞株后,将对单克隆细胞株整合情况鉴定。主要采取Junction PCR以及TA克隆和测序等方式验证。
实施例2.过表达HsQSOX1b和Survivin的单克隆稳定细胞株的建立
试剂与试剂盒:PMSF和BCAProtein Assay kit购自上海生工。HRP-conjogatedgoat anti-mouse IgG(H+L)、HRP-conjogated goat anti rabbit、Anti-βactin antibody和Anti-QSOX1antibody购置于Proteintech。Pro-light HRPchemiluminescent kit购置于北京天根。ER-Tracker Red和Hoechst 33342dye购自Thermo Fisher Scientific。其他的生化试剂属于国产常规的分析纯试剂。
细胞、菌株和质粒:重组质粒sgRNA1-QSOX1-pX458(Q1)、sgRNA2-QSOX1-pX458(Q2)、sgRNA1-BIRC5-pX458(B1)和sgRNA2-BIRC5-pX458(B2)为本发明上述阶段所构建。E.coli DH5α(Invirogen,USA)作为质粒扩增菌株;细胞株CHO-K1细胞(中科院细胞库)。
试剂配制:
5×蛋白电泳缓冲液(Tris-甘氨酸):称取Tris碱15.1g,甘氨酸94g,SDS 5g,加双蒸水定容至1L。
15%蛋白电泳分离胶:量取ddH2O 2.3ml,30%丙烯酰胺5.0ml,Tris-HCI(pH6.8)2.5ml,10%SDS 100μl,10%APS 100μl,TEMED 100μl,混合均匀。
5%蛋白电泳浓缩胶:量取ddH2O 3.15ml,30%丙烯酰胺0.75ml,Tris-HCI(pH6.8)0.57ml,10%SDS 45μl,10%APS 45μl,TEMED 4.5μl,混合均匀。
考马斯亮蓝染色液:称取考马斯亮蓝(R-250)2g,量取乙醇200ml,冰醋酸100ml,去离子水750ml,滤纸过滤,室温保存。
细胞蛋白裂解液:量取1mL NP-40裂解液和100μL 0.1M PMSF,混合上述两种试剂,4℃保存,现配现用。
转移缓冲液:2.9g甘氨酸、5.8g Tris、0.37g SDS、200mL甲醇,以蒸馏水将前三种试剂溶解,再加入甲醇,最后定容到1L,混匀室温保存,可重复使用2-3次。
TBS缓冲液:10mL pH7.5的1M Tris·HCl中加入8.8g NaCl,以蒸馏水溶解并定容至1L,混匀室温保存。
TBST缓冲液:250μL 20%Tween20加入500mL TBS中,将两种成分混匀,现用现配。
封闭液:5g non-fat milk加入100mL TBST中,将两种成分混匀,现用现配。
5×ER-Tracker Red母液:5uL 1mM ER-Tracker Red加入到1mLHBSS/Ca/Mg中,避光保存,现配现用。
Hoechst 33342工作液:将2μL Hoechst 33342母液与4mL的DPBS中混匀,避光保存。
4%的多聚甲醛:100mL pH7.4的0.1M DPBS中加入4g多聚甲醛,混匀两种试剂,60℃以下磁力搅拌器加热搅拌直至溶解。
Western Blot检测阳性单克隆细胞株中HsQSOX1b和Survivin表达情况:①将上述获得的eGFP阳性细胞进行扩大培养,接种5×105的细胞到60mm的培养皿中,加入4mL的培养基并置于培养箱中进行培养。24h后,以DPBS洗细胞两遍,尽量去除多余的DPBS,然后加入适量的含有PMSF的NP-40裂解液,用移液枪吸取裂解液吹打细胞,使裂解液能够接触到细胞,然后将裂解液同裂解的细胞样品全部转移到离心管中,以4℃10000g离心10min,最后将上清转移到新的PCR管置于冰上备用,整个裂解过程均需要在冰上和4℃下进行;②取适量裂解液上清,以BCA蛋白浓度测定试剂盒测定总蛋白浓度,最后取50μg总蛋白进行上样,进行SDS-PAGE电泳;③将凝胶置于转膜缓冲液中,根据预染marker切取目的蛋白区域的凝胶,量取凝胶大小,剪相对应的PVDF膜,并以无水甲醇激活膜5min,然后将膜浸泡在转膜缓冲液中10min;④按照从阴极到阳极的顺序,依次放入经转膜缓冲液浸泡过的海绵-三层滤纸-凝胶-PVDF膜-三层滤纸-海绵,(切记凝胶必须置于阴极)扣好阳极板,置于转膜装置中,75V转膜1.5-2h;⑤将膜以封闭液室温封闭1h,然后以TBST洗膜3×5min;⑥以封闭液稀释一抗,然后与PVDF膜在4℃孵育过夜,再以TBST洗膜3×5min;⑦以封闭液稀释二抗,然后室温与膜孵育1h,再以TBST洗膜3×5min;⑧以TBST洗膜3×10min,然后进行ECL化学发光成像。
活细胞成像:①将2000左右的eGFP阳性细胞均匀铺在20mm的培养皿中,将培养皿置于培养箱中培养24h。②以DPBS洗细胞两次,加入预热的ER-Tracker Red工作液(工作液浓度在1μM左右),37℃,避光染色15-30min。③缓慢吸去染料,以PBS清洗两次,每次5min,然后加入Hoechst 33342工作液37℃避光染色10-20min。④吸去染料,以DPBS洗两遍,然后加入新鲜的培养基或者DPBS,在荧光倒置显微镜下镜检,拍照记录。(注意:整个操作过程需要避光,防止荧光信号淬灭。)
细胞爬片、固定以及共聚焦激光扫描电镜成像:①细胞的爬片:接种1000个左右的细胞于20mm玻底的共聚焦培养皿中,并将培养皿置于培养箱中培养48h左右。②细胞固定:沿着边缘吸去培养基,缓慢加入DPBS清洗细胞两次,每次5min,加入4%的多聚甲醛室温固定细胞20min。③以DPBS清洗两遍,加入预热的ER-Tracker Red工作液37℃,避光染色15min。④以DPBS清洗细胞两次,加入预热的Hoechst 33342工作液37℃,避光染色10min。⑤以DPBS清洗细胞两次,最后加入新鲜的DPBS,避光保存进行激光共聚焦扫描电镜的拍摄。(注:整个细胞染色过程需要避光进行,且拍照时需要也要在暗处进行,防止荧光信号淬灭。)
实施例3.过表达HsQSOX1b和Survivin的单克隆株的胞内蛋白质量控制初探
试剂与试剂盒:PrimeScriptTM RT Master Mix、Premix Ex Taq和限制内切酶(Hind III、BamH I)购置于TaKaRa。Annexin V-PE apoptosis detection kit和GSHand GSSG Assay Kit购置于Beyotime。Gaussia Luciferase Assay Kit购置于NEB。PI Staining Solution购置于Yeasen。其他的生化试剂属于国产常规的分析纯试剂。
细胞和质粒:细胞:稳定表达HsQSOX1b-KDEL的单克隆株EC#1-C1和稳定表达HsQSOX1b-KDEL和Survivin的单克隆株EC#2-B6;质粒:pGluc-Basic,和pCDNA3.1。
试剂配制:
5mg/mL的MTT母液配制:准确称取250mg MTT溶于50mL的PBS中,然后以0.22μm的无菌滤膜过滤除菌,分装后,-20℃避光保存。
胞内GSH/GSSG水平测定:GSH和GSSG的检测以试剂盒进行,其原理大致如下:谷胱甘肽还原酶能够将GSSG还原成GSH,GSH能够与生色底物DTNB反应生成黄色底物TNB和GSSG,合并两个反应,tGSH(tGSH=GSH+GSSG)的反应相当于一个颜色产生的限速因素,tGSH的量决定了TNB生成的量,故可以通过检测A412nm的吸收值计算tGSH的量。而GSSG的测定是通过GSH清除试剂将GSH清除,然后以上述原理计算GSSG含量,最后以tGSH减去GSSG的量得到GSH的含量。实验的具体操作按照试剂盒进行。
XBP1splicing assay
1)细胞总RNA的提取以Trizol法提取总RNA:下面以六孔板为例,方法简述如下:①将六孔板中细胞以Rnase-Free水洗两遍,直接加入500μL的Trizol试剂,以移液枪吹打几次,室温静置5min,使核酸蛋白完全水解。②(可选)若样品中含有较多的蛋白、脂质、糖类,可在2-8℃,1000g离心10min,取上清进行下一步实验(沉淀中为外膜,多糖,高分子量的DNA,上清中为RNA)。③加入1/5体积的氯仿,剧烈震荡15s,冰上孵育10min,4℃,12000rpm离心15min。④取上层水相(500μL左右)于另一个1.5mL的EP管中,加入等体积的异丙醇,摇匀,冰上孵育5min,4℃,12000rpm离心15min。⑤弃上清,干燥,加入75%的DEPC水配置的乙醇1mL,颠倒洗涤,4℃,12000rpm离心15min。⑥弃上清,干燥5-10min,加入20μL的DEPC水完全溶解RNA。⑦测定RNA浓度(A260/A280在1.8-2.0之间),最后以DEPC水稀释到500ng/μL。
2)反转录以PrimeScrip RT Master Mix试剂盒进行:反转录以10μL体系进行,取500ng的总RNA作为模板,再加上2μL的5×PrimeScript RT Master Mix,最后以RNase FreeddH2O补齐到10μL。加样过程需要在冰上操作。样品加好后,以一下程序进行反应:37℃,15min,85℃处理5s,最后置于冰上准备进行荧光定量PCR。
3)荧光定量PCR:qPCR以Premix Ex Taq试剂盒进行。按照表1.7所列加入个组分,加样过程需要在冰上进行。qPCR中所用的引物见表1.8所示。
表1.7 qPCR反应体系
表1.8 qPCR进行XBP1s剪接试验所用引物列表
加样结束后以Bio-Rad CFX96qPCR仪进行,反应程序简述为:预变性:95℃,30s;PCR反应:95℃,5s;60℃,30s;40个循环;获得溶解曲线。PCR结束后,对数据进行分析,基因表达水平以2-ΔΔCt计算获得。公式如下:表达水平=2-ΔΔCt,其中ΔΔCt=[(Ct gene intest cell lines-Ct gene in control cell line)-(Ctβ-actin in test cell lines-Ctβ-actin in control cell line)]。
流式细胞仪检测细胞抗凋亡能力:①制备2×105/mL的细胞悬液,并铺在6孔板,每孔2mL,置于培养箱中培养24h。②然后往每个孔中加入终浓度为0.2nM的Staurosporine。③继续培养细胞18h,收集培养基中细胞,并以0.25%的胰蛋白酶消化孔板中的细胞,再以预冷的DPBS洗细胞两次,细胞收集在4℃下以500g离心5min。④弃去上清,以180μL 1×binding buffer重悬细胞,然后加入5μL Annexin V-PE,缓慢混匀,在室温暗处孵育15min,然后加入10μL PI Staining Solution并在暗处室温孵育5min。⑤最后,加入300μL1×binding buffer并及时进行流式细胞仪分析。
MTT法检测细胞活性:①分别制备2×105/mL的单克隆细胞和对照组CHO-K1的细胞悬液,然后铺96孔板,每孔100μL,六个复孔。②将细胞置于培养箱连续培养96h。③将孔板从培养箱中取出,加入20μL终浓度5mg/ml的MTT溶液,继续置于培养箱中培养4h。⑤4h后,将细胞取出,缓慢沿着孔壁将培养基吸去,然后加入100μL的DMSO,并在室温摇床上轻轻避光摇晃10min。⑥最后,在酶标仪上测定490nm处的吸光值。然后根据测得结果计算细胞存活率:细胞存活率(%)=(实验组/对照组)×100%。
GLuc试验
1)载体和启动子的选择:载体构建和测序引物列于表1.9中。
表1.9 pGLuc-CMV载体构建所用引物和测序序列
2)细胞转染:从宿主菌中提取步骤1)中构建并测序正确的pGLuc-CMV载体,并以微量核酸分析仪测定浓度。细胞转染步骤同上述细胞转染中所述。不同之处如下:铺96孔板的细胞密度为1.5×105cells/mL,每孔100μL;转染试剂为0.2μL/孔;载体量为100ng/孔。将细胞置于培养箱中继续培养24h。实验组和对照组均做三组平行试验。
3)荧光素酶活测定:荧光素酶活性的测定以Gaussia LuciferaseAssay试剂盒进行,实验流程大致如下:①GLuc实验工作溶液:以100个样计算,加入50μL的底物,800μL稳定剂和5mL的GLuc试验测定缓冲液。②轻轻混匀上述试剂(不能震荡)上下颠倒即可。于暗处室温孵育25min。③开启荧光酶标仪,等待仪器冷却,设置程序,将积分时间调成5s。④在不透明的96孔板中加入5-20μL的样品,然后加入孵育好的工作液,每孔50μL,并轻轻混匀,防止气泡产生。⑤室温孵育35s,在生物发光酶标仪的475nm出检测生物发光强度。按照实验进行单点测定法或者动力学测定法。(注:仪器的生物发光线性范围以梯度稀释的转染pGLuc-CMV的96h后的EC#2-B6单克隆细胞培养基上清进行。)
以上所述仅是本发明的优选实施方式,应当指出,对于本技术领域的普通技术人员,在不脱离本发明原理的前提下,还可以做出若干改进和润饰,这些改进和润饰也应视为本发明的保护范围。
SEQUENCE LISTING
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Claims (3)
1.一种基于CRISPR/Cas9基因编辑技术改造CHO细胞的制备方法,其特征在于,选取二硫键折叠相关的巯基氧化酶HsQSOX1b和细胞凋亡相关的生存素Survivin作为目的基因,设计成外源表达盒EC#1和EC#2,利用新型的CRISPR/Cas9的基因编辑技术,将其整合到CHO细胞的特定基因位点。
2.根据权利要求1所述的一种基于CRISPR/Cas9基因编辑技术改造CHO细胞的制备方法,其特征在于,表达盒EC#1和EC#2的串联组合方式分别为CMV(E+P)+eGFP+HsQSOX1b-KDEL+BGH pA和CMV(E+P)+eGFP+HsQSOX1b-KDEL+T2A+Survivin+BGH pA。
3.利用权利要求1或2所述基于CRISPR/Cas9基因编辑技术改造CHO细胞的制备方法制备获得的单克隆细胞株,其特征在于,所述单克隆细胞株HsQSOX1b和Survivin过表达。
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