CA3128103C - METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER - Google Patents

METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER

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Publication number
CA3128103C
CA3128103C CA3128103A CA3128103A CA3128103C CA 3128103 C CA3128103 C CA 3128103C CA 3128103 A CA3128103 A CA 3128103A CA 3128103 A CA3128103 A CA 3128103A CA 3128103 C CA3128103 C CA 3128103C
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Prior art keywords
gene
tumor
expression
expression level
genes
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Active
Application number
CA3128103A
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English (en)
French (fr)
Other versions
CA3128103A1 (en
Inventor
Wayne Cowens
Steven Shak
Audrey Goddard
Dejan Knezevic
Joffre Baker
Michael C. Kiefer
Tara Maddala
Frederick L. Baehner
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Genomic Health Inc
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Priority to CA3128103A priority Critical patent/CA3128103C/en
Priority to CA3256492A priority patent/CA3256492A1/en
Publication of CA3128103A1 publication Critical patent/CA3128103A1/en
Application granted granted Critical
Publication of CA3128103C publication Critical patent/CA3128103C/en
Active legal-status Critical Current
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • G01N33/57525
    • GPHYSICS
    • G06COMPUTING OR CALCULATING; COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N7/00Computing arrangements based on specific mathematical models
    • G06N7/01Probabilistic graphical models, e.g. probabilistic networks
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B99/00Subject matter not provided for in other groups of this subclass
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H50/00ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
    • G16H50/20ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for computer-aided diagnosis, e.g. based on medical expert systems
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/112Disease subtyping, staging or classification
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/118Prognosis of disease development
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers

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  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Medical Informatics (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Pathology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • Biomedical Technology (AREA)
  • General Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Data Mining & Analysis (AREA)
  • Public Health (AREA)
  • Hospice & Palliative Care (AREA)
  • Oncology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Computing Systems (AREA)
  • Artificial Intelligence (AREA)
  • Mathematical Physics (AREA)
  • Probability & Statistics with Applications (AREA)
  • Algebra (AREA)
  • Pure & Applied Mathematics (AREA)
  • Mathematical Optimization (AREA)
  • Mathematical Analysis (AREA)
CA3128103A 2010-01-11 2011-01-07 METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER Active CA3128103C (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
CA3128103A CA3128103C (en) 2010-01-11 2011-01-07 METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER
CA3256492A CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US29403810P 2010-01-11 2010-01-11
US61/294,038 2010-01-11
US34623010P 2010-05-19 2010-05-19
US61/346,230 2010-05-19
CA2783858A CA2783858C (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA3128103A CA3128103C (en) 2010-01-11 2011-01-07 METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER
CA3256492A CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
CA2783858A Division CA2783858C (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Related Child Applications (1)

Application Number Title Priority Date Filing Date
CA3256492A Division CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Publications (2)

Publication Number Publication Date
CA3128103A1 CA3128103A1 (en) 2011-07-14
CA3128103C true CA3128103C (en) 2025-11-18

Family

ID=44258831

Family Applications (3)

Application Number Title Priority Date Filing Date
CA3128103A Active CA3128103C (en) 2010-01-11 2011-01-07 METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER
CA3256492A Pending CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA2783858A Active CA2783858C (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Family Applications After (2)

Application Number Title Priority Date Filing Date
CA3256492A Pending CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA2783858A Active CA2783858C (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Country Status (12)

Country Link
US (4) US9551034B2 (show.php)
EP (5) EP3831964B1 (show.php)
JP (5) JP6286124B2 (show.php)
AU (1) AU2011203977B2 (show.php)
CA (3) CA3128103C (show.php)
DK (1) DK3178944T3 (show.php)
ES (2) ES3027507T3 (show.php)
IL (6) IL219978A (show.php)
MX (3) MX341866B (show.php)
NZ (4) NZ719474A (show.php)
SG (1) SG181806A1 (show.php)
WO (1) WO2011085263A2 (show.php)

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Publication number Publication date
SG181806A1 (en) 2012-07-30
MX375138B (es) 2025-03-06
JP6546214B2 (ja) 2019-07-17
US20210166790A1 (en) 2021-06-03
IL262100A (en) 2018-11-29
NZ705645A (en) 2016-05-27
ES2741379T3 (es) 2020-02-10
EP3178944A3 (en) 2017-09-13
IL251635B (en) 2018-04-30
EP2524055A4 (en) 2013-06-05
IL219978A (en) 2017-04-30
EP3178944A2 (en) 2017-06-14
EP3178944B1 (en) 2019-05-15
CA3256492A1 (en) 2025-11-29
EP2524055A2 (en) 2012-11-21
IL262100B (en) 2019-11-28
DK3178944T3 (da) 2019-08-12
NZ600268A (en) 2014-08-29
US10892038B2 (en) 2021-01-12
US11776664B2 (en) 2023-10-03
JP6286124B2 (ja) 2018-02-28
US20220051755A9 (en) 2022-02-17
US20110171633A1 (en) 2011-07-14
US12412642B2 (en) 2025-09-09
JP2019162150A (ja) 2019-09-26
IL280689A (en) 2021-03-25
CA2783858C (en) 2021-09-14
WO2011085263A3 (en) 2012-01-12
US9551034B2 (en) 2017-01-24
EP3831964A2 (en) 2021-06-09
IL219978A0 (en) 2012-07-31
US20170121780A1 (en) 2017-05-04
EP3029155A2 (en) 2016-06-08
JP2013516195A (ja) 2013-05-13
US20240096451A1 (en) 2024-03-21
WO2011085263A2 (en) 2011-07-14
AU2011203977B2 (en) 2015-02-05
EP3831964B1 (en) 2025-04-16
JP7307602B2 (ja) 2023-07-12
JP2016174600A (ja) 2016-10-06
EP3029155A3 (en) 2016-08-31
MX341866B (es) 2016-09-06
MX2020009704A (es) 2020-10-07
ES3027507T3 (en) 2025-06-16
NZ719474A (en) 2018-07-27
MX2012007882A (es) 2012-08-03
AU2011203977A1 (en) 2012-06-21
EP3561078A1 (en) 2019-10-30
IL256335B (en) 2018-12-31
IL280689B (en) 2022-01-01
JP2021177761A (ja) 2021-11-18
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