CA3128103C - METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER - Google Patents

METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER

Info

Publication number
CA3128103C
CA3128103C CA3128103A CA3128103A CA3128103C CA 3128103 C CA3128103 C CA 3128103C CA 3128103 A CA3128103 A CA 3128103A CA 3128103 A CA3128103 A CA 3128103A CA 3128103 C CA3128103 C CA 3128103C
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CA
Canada
Prior art keywords
possibility
gene expression
kidney cancer
clinical outcome
cancer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CA3128103A
Other languages
French (fr)
Other versions
CA3128103A1 (en
Inventor
Wayne Cowens
Steven Shak
Audrey Goddard
Dejan Knezevic
Joffre Baker
Michael C Kiefer
Tara Maddala
Frederick L Baehner
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Genomic Health Inc
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Genomic Health Inc
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Publication date
Application filed by Genomic Health Inc filed Critical Genomic Health Inc
Priority to CA3128103A priority Critical patent/CA3128103C/en
Priority to CA3256492A priority patent/CA3256492A1/en
Publication of CA3128103A1 publication Critical patent/CA3128103A1/en
Application granted granted Critical
Publication of CA3128103C publication Critical patent/CA3128103C/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/57407—Specifically defined cancers
    • G01N33/57438—Specifically defined cancers of liver, pancreas or kidney
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N7/00—Computing arrangements based on specific mathematical models
    • G06N7/01—Probabilistic graphical models, e.g. probabilistic networks
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B99/00—Subject matter not provided for in other groups of this subclass
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H50/00—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
    • G16H50/20—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for computer-aided diagnosis, e.g. based on medical expert systems
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/112—Disease subtyping, staging or classification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/118—Prognosis of disease development
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers

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  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • Immunology (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Theoretical Computer Science (AREA)
  • Biomedical Technology (AREA)
  • Genetics & Genomics (AREA)
  • Medical Informatics (AREA)
  • Urology & Nephrology (AREA)
  • Pathology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • Hematology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Oncology (AREA)
  • Microbiology (AREA)
  • Hospice & Palliative Care (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • General Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Data Mining & Analysis (AREA)
  • Public Health (AREA)
  • Medicinal Chemistry (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Food Science & Technology (AREA)
  • Cell Biology (AREA)
  • Computing Systems (AREA)
  • Pure & Applied Mathematics (AREA)

Abstract

The present disclosure provides gene and gene sets, the expression of which is important in die classification and/or prognosis of cancer, in particular of renal cell carcinoma.
CA3128103A 2010-01-11 2011-01-07 METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER Active CA3128103C (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
CA3128103A CA3128103C (en) 2010-01-11 2011-01-07 METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER
CA3256492A CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US29403810P 2010-01-11 2010-01-11
US61/294,038 2010-01-11
US34623010P 2010-05-19 2010-05-19
US61/346,230 2010-05-19
CA2783858A CA2783858C (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA3128103A CA3128103C (en) 2010-01-11 2011-01-07 METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER
CA3256492A CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
CA2783858A Division CA2783858C (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Publications (2)

Publication Number Publication Date
CA3128103A1 CA3128103A1 (en) 2011-07-14
CA3128103C true CA3128103C (en) 2025-11-18

Family

ID=44258831

Family Applications (3)

Application Number Title Priority Date Filing Date
CA3256492A Pending CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA2783858A Active CA2783858C (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA3128103A Active CA3128103C (en) 2010-01-11 2011-01-07 METHOD FOR USING GENE EXPRESSION TO DETERMINE THE POSSIBILITY OF A CLINICAL OUTCOME OF KIDNEY CANCER

Family Applications Before (2)

Application Number Title Priority Date Filing Date
CA3256492A Pending CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA2783858A Active CA2783858C (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Country Status (12)

Country Link
US (4) US9551034B2 (en)
EP (5) EP3029155A3 (en)
JP (5) JP6286124B2 (en)
AU (1) AU2011203977B2 (en)
CA (3) CA3256492A1 (en)
DK (1) DK3178944T3 (en)
ES (2) ES2741379T3 (en)
IL (6) IL219978A (en)
MX (3) MX375138B (en)
NZ (4) NZ600268A (en)
SG (1) SG181806A1 (en)
WO (1) WO2011085263A2 (en)

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EP3561078A1 (en) 2019-10-30
EP2524055A4 (en) 2013-06-05
US9551034B2 (en) 2017-01-24
JP6286124B2 (en) 2018-02-28
EP3831964A2 (en) 2021-06-09
JP2016174600A (en) 2016-10-06
EP2524055A2 (en) 2012-11-21
IL251635A0 (en) 2017-06-29
JP2019162150A (en) 2019-09-26
AU2011203977B2 (en) 2015-02-05
JP7307602B2 (en) 2023-07-12
NZ617003A (en) 2015-04-24
WO2011085263A2 (en) 2011-07-14
EP3029155A3 (en) 2016-08-31
CA2783858C (en) 2021-09-14
US11776664B2 (en) 2023-10-03
CA2783858A1 (en) 2011-07-14
US20170121780A1 (en) 2017-05-04
IL219978A (en) 2017-04-30
IL256335B (en) 2018-12-31
NZ719474A (en) 2018-07-27
EP3029155A2 (en) 2016-06-08
MX2012007882A (en) 2012-08-03
EP3831964A3 (en) 2021-10-20
IL262100A (en) 2018-11-29
IL270151B (en) 2021-03-25
CA3128103A1 (en) 2011-07-14
IL280689B (en) 2022-01-01
WO2011085263A3 (en) 2012-01-12
JP7385630B2 (en) 2023-11-22
IL219978A0 (en) 2012-07-31
US20110171633A1 (en) 2011-07-14
US20220051755A9 (en) 2022-02-17
JP6546214B2 (en) 2019-07-17
EP3178944A3 (en) 2017-09-13
JP2017148059A (en) 2017-08-31
EP3831964B1 (en) 2025-04-16
IL280689A (en) 2021-03-25
ES3027507T3 (en) 2025-06-16
US12412642B2 (en) 2025-09-09
MX2020009704A (en) 2020-10-07
IL262100B (en) 2019-11-28
DK3178944T3 (en) 2019-08-12
IL251635B (en) 2018-04-30
SG181806A1 (en) 2012-07-30
JP2021177761A (en) 2021-11-18
ES2741379T3 (en) 2020-02-10
JP2013516195A (en) 2013-05-13
MX341866B (en) 2016-09-06
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CA3256492A1 (en) 2025-11-29
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US10892038B2 (en) 2021-01-12
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AU2011203977A1 (en) 2012-06-21
US20210166790A1 (en) 2021-06-03
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