CA2982369A1 - Method for blocking mirna - Google Patents
Method for blocking mirna Download PDFInfo
- Publication number
- CA2982369A1 CA2982369A1 CA2982369A CA2982369A CA2982369A1 CA 2982369 A1 CA2982369 A1 CA 2982369A1 CA 2982369 A CA2982369 A CA 2982369A CA 2982369 A CA2982369 A CA 2982369A CA 2982369 A1 CA2982369 A1 CA 2982369A1
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- Prior art keywords
- nucleic acid
- mirna
- blocking
- rna
- mir
- Prior art date
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Applications Claiming Priority (3)
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|---|---|---|---|
| US201562146015P | 2015-04-10 | 2015-04-10 | |
| US62/146,015 | 2015-04-10 | ||
| PCT/US2016/026846 WO2016164866A1 (en) | 2015-04-10 | 2016-04-10 | METHOD FOR BLOCKING miRNA |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CA2982369A1 true CA2982369A1 (en) | 2016-10-13 |
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Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA2982369A Pending CA2982369A1 (en) | 2015-04-10 | 2016-04-10 | Method for blocking mirna |
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| Country | Link |
|---|---|
| US (2) | US10480023B2 (enExample) |
| EP (1) | EP3280805B1 (enExample) |
| JP (1) | JP6791875B2 (enExample) |
| AU (1) | AU2016246820B2 (enExample) |
| CA (1) | CA2982369A1 (enExample) |
| IL (1) | IL254972B (enExample) |
| MX (1) | MX386064B (enExample) |
| WO (1) | WO2016164866A1 (enExample) |
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| WO2016161388A1 (en) | 2015-04-03 | 2016-10-06 | University Of Massachusetts | Fully stabilized asymmetric sirna |
| WO2016196824A1 (en) | 2015-06-02 | 2016-12-08 | Children's Medical Center Corporation | Nucleic acid complexes for screening barcoded compounds |
| US12077807B2 (en) | 2015-06-27 | 2024-09-03 | The Research Foundation For The State University Of New York | Compositions and methods for analyte detection using nanoswitches |
| WO2017030973A1 (en) | 2015-08-14 | 2017-02-23 | University Of Massachusetts | Bioactive conjugates for oligonucleotide delivery |
| JP7749201B6 (ja) | 2016-01-31 | 2025-10-21 | ユニバーシティー オブ マサチューセッツ | 分岐オリゴヌクレオチド |
| US10287625B2 (en) * | 2016-03-18 | 2019-05-14 | Norgen Biotek Corp. | Methods and kits for separating nucleic acids by size |
| WO2017165647A1 (en) | 2016-03-23 | 2017-09-28 | Children's Medical Center Corporation | Rapid and sensitive detection and quantification of analytes in complex samples using polymer-based methods |
| CA3033368A1 (en) | 2016-08-12 | 2018-02-15 | University Of Massachusetts | Conjugated oligonucleotides |
| WO2018106721A1 (en) * | 2016-12-05 | 2018-06-14 | Children's Medical Center Corporation | Nucleic acid nanoswitch construction methods |
| WO2018157100A1 (en) * | 2017-02-27 | 2018-08-30 | Bioo Scientific Corporation | Methods and kits for depleting undesired nucleic acids |
| CN110799647A (zh) | 2017-06-23 | 2020-02-14 | 马萨诸塞大学 | 双尾自递送sirna及相关的方法 |
| CN111278844B (zh) * | 2017-09-13 | 2023-12-19 | 贝克顿·迪金森公司 | 用于使用氧化铁颗粒提取核酸的方法和组合物 |
| US11591636B2 (en) | 2017-11-20 | 2023-02-28 | Children's Medical Center Corporation | Force-controlled nanoswitch assays for single-molecule detection in complex biological fluids |
| CN108676846B (zh) * | 2018-05-25 | 2022-04-01 | 艾吉泰康生物科技(北京)有限公司 | 一种桥式寡核苷酸在文库目标区域捕获中的应用 |
| EP3833763A4 (en) | 2018-08-10 | 2023-07-19 | University of Massachusetts | MODIFIED OLIGONUCLEOTIDES FOR TARGETING SNPS |
| US11279930B2 (en) | 2018-08-23 | 2022-03-22 | University Of Massachusetts | O-methyl rich fully stabilized oligonucleotides |
| JP2022523467A (ja) | 2019-01-18 | 2022-04-25 | ユニバーシティ・オブ・マサチューセッツ | 動的な薬物動態を修飾するアンカー |
| CN114502730A (zh) | 2019-08-09 | 2022-05-13 | 马萨诸塞大学 | 经化学修饰的靶向snp的寡核苷酸 |
| US12365894B2 (en) | 2019-09-16 | 2025-07-22 | University Of Massachusetts | Branched lipid conjugates of siRNA for specific tissue delivery |
| EP4359539A4 (en) | 2021-06-23 | 2025-05-14 | University Of Massachusetts | ANTI-FLT1 OLIGONUCLEOTIDE COMPOUNDS OPTIMIZED FOR THE TREATMENT OF PREECLAMPSIA AND OTHER ANGIOGENIC DISORDERS |
| WO2023066534A1 (en) * | 2021-10-22 | 2023-04-27 | Hummingbird Diagnostics Gmbh | Targeted inhibition of reverse transcription using antisense oligos |
| US20230323341A1 (en) * | 2022-03-25 | 2023-10-12 | Bioo Scientific Corporation | Methods, compositions, and kits for inhibiting formation of adapter dimers |
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| US20030211483A1 (en) * | 2002-05-09 | 2003-11-13 | Schroeder Benjamin G. | Methods for the enrichment of low-abundance polynucleotides |
| WO2007025281A2 (en) * | 2005-08-24 | 2007-03-01 | Applera Corporation | A method to quantify sirnas, mirnas and polymorphic mirnas |
| WO2010126913A1 (en) | 2009-04-27 | 2010-11-04 | Gen-Probe Incorporated | Methods and kits for use in the selective amplification of target sequences |
| CN102791877A (zh) * | 2009-11-06 | 2012-11-21 | 酶学有限公司 | 使用双链核酸复合物与耐热聚合酶用于合成脱氧核糖核苷酸链的组合物和方法 |
| CN103237901B (zh) * | 2010-03-01 | 2016-08-03 | 卡里斯生命科学瑞士控股有限责任公司 | 用于治疗诊断的生物标志物 |
| WO2012005572A1 (en) * | 2010-07-06 | 2012-01-12 | Interna Technologies Bv | Mirna and its diagnostic and therapeutic uses in diseases or conditions associated with melanoma, or in diseases or conditions associated with activated braf pathway |
| EP3620533B1 (en) * | 2011-09-06 | 2023-01-18 | Gen-Probe Incorporated | Closed nucleic acid structures |
| WO2014071322A1 (en) * | 2012-11-02 | 2014-05-08 | Life Technologies Corporation | Small RNA Capture, Detection and Quantification |
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