CA2957382C - Modified nucleotide linkers - Google Patents
Modified nucleotide linkers Download PDFInfo
- Publication number
- CA2957382C CA2957382C CA2957382A CA2957382A CA2957382C CA 2957382 C CA2957382 C CA 2957382C CA 2957382 A CA2957382 A CA 2957382A CA 2957382 A CA2957382 A CA 2957382A CA 2957382 C CA2957382 C CA 2957382C
- Authority
- CA
- Canada
- Prior art keywords
- nucleotide
- optionally substituted
- nucleoside
- alkyl
- hydrogen
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H1/00—Processes for the preparation of sugar derivatives
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
- C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
- C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
- C07H19/14—Pyrrolo-pyrimidine radicals
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Biotechnology (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Physics & Mathematics (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biophysics (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- General Physics & Mathematics (AREA)
- Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Saccharide Compounds (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Investigating Or Analysing Biological Materials (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| GBGB1414098.2A GB201414098D0 (en) | 2014-08-08 | 2014-08-08 | Modified nucleotide linkers |
| GB1414098.2 | 2014-08-08 | ||
| PCT/GB2015/052282 WO2016020691A1 (en) | 2014-08-08 | 2015-08-06 | Modified nucleotide linkers |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CA2957382A1 CA2957382A1 (en) | 2016-02-11 |
| CA2957382C true CA2957382C (en) | 2022-05-31 |
Family
ID=51629525
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA2957382A Active CA2957382C (en) | 2014-08-08 | 2015-08-06 | Modified nucleotide linkers |
Country Status (19)
| Country | Link |
|---|---|
| US (3) | US10190157B2 (enExample) |
| EP (2) | EP3564252B1 (enExample) |
| JP (3) | JP6563482B2 (enExample) |
| KR (2) | KR102287718B1 (enExample) |
| CN (2) | CN111704643A (enExample) |
| AU (2) | AU2015298469B2 (enExample) |
| BR (2) | BR122020018717B1 (enExample) |
| CA (1) | CA2957382C (enExample) |
| DK (2) | DK3564252T3 (enExample) |
| ES (2) | ES2773438T3 (enExample) |
| GB (1) | GB201414098D0 (enExample) |
| IL (1) | IL250498B (enExample) |
| MX (2) | MX385213B (enExample) |
| MY (1) | MY195167A (enExample) |
| NZ (2) | NZ748150A (enExample) |
| RU (1) | RU2699993C2 (enExample) |
| SG (3) | SG10202000850XA (enExample) |
| WO (1) | WO2016020691A1 (enExample) |
| ZA (1) | ZA201700838B (enExample) |
Families Citing this family (51)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| GB201414098D0 (en) * | 2014-08-08 | 2014-09-24 | Illumina Cambridge Ltd | Modified nucleotide linkers |
| WO2016182984A1 (en) * | 2015-05-08 | 2016-11-17 | Centrillion Technology Holdings Corporation | Disulfide-linked reversible terminators |
| CN114989235A (zh) | 2015-09-28 | 2022-09-02 | 哥伦比亚大学董事会 | 用作dna合成测序的可逆终止物的基于新的二硫键接头的核苷酸的设计与合成 |
| US11266673B2 (en) | 2016-05-23 | 2022-03-08 | The Trustees Of Columbia University In The City Of New York | Nucleotide derivatives and methods of use thereof |
| CN110382104B (zh) | 2016-12-22 | 2023-01-24 | 伊鲁米那股份有限公司 | 包括测序引物和非测序实体的阵列 |
| WO2018165207A1 (en) | 2017-03-06 | 2018-09-13 | Singular Genomic Systems, Inc. | Nucleic acid sequencing-by-synthesis (sbs) methods that combine sbs cycle steps |
| EP3600339A4 (en) | 2017-03-28 | 2021-05-19 | The Trustees of Columbia University in the City of New York | 3'-O-MODIFIED NUCLEOTIDE ANALOGUE WITH DIFFERENT FITTING LINKS TO FIX FLUORESCENT MARKERS TO THE BASE FOR DNA SEQUENCING BY SYNTHESIS |
| WO2019071474A1 (zh) * | 2017-10-11 | 2019-04-18 | 深圳华大智造科技有限公司 | 修饰的核苷或核苷酸 |
| US12215124B2 (en) | 2018-02-21 | 2025-02-04 | Singular Genomics Systems, Inc. | Fluorinated nucleotides and uses thereof |
| EP3765028A4 (en) | 2018-03-15 | 2021-12-15 | The Trustees of Columbia University in the City of New York | NUCLEOTID ANALOGUES AND THEIR USE FOR NUCLEIC ACID SEQUENCING AND ANALYSIS |
| US12145960B2 (en) | 2018-10-25 | 2024-11-19 | Singular Genomics Systems, Inc. | Nucleotide analogues |
| SG11202012748TA (en) | 2018-12-14 | 2021-01-28 | Illumina Cambridge Ltd | Decreasing phasing with unlabeled nucleotides during sequencing |
| US11293061B2 (en) | 2018-12-26 | 2022-04-05 | Illumina Cambridge Limited | Sequencing methods using nucleotides with 3′ AOM blocking group |
| US11970735B2 (en) | 2019-01-08 | 2024-04-30 | Singular Genomics Systems, Inc. | Nucleotide cleavable linkers and uses thereof |
| EP3931263A1 (en) | 2019-03-01 | 2022-01-05 | Illumina Cambridge Limited | Exocyclic amine substituted coumarin compounds and their uses as fluorescent labels |
| NL2023327B1 (en) | 2019-03-01 | 2020-09-17 | Illumina Inc | Multiplexed fluorescent detection of analytes |
| IL279660B2 (en) * | 2019-03-01 | 2024-10-01 | Illumina Cambridge Ltd | Tertiary amine substituted coumarin compounds and their uses as fluorescent labels |
| WO2020178231A1 (en) | 2019-03-01 | 2020-09-10 | Illumina, Inc. | Multiplexed fluorescent detection of analytes |
| US11421271B2 (en) | 2019-03-28 | 2022-08-23 | Illumina Cambridge Limited | Methods and compositions for nucleic acid sequencing using photoswitchable labels |
| WO2021104845A1 (en) | 2019-11-27 | 2021-06-03 | Illumina Cambridge Limited | Cyclooctatetraene containing dyes and compositions |
| JP7287299B2 (ja) | 2020-01-31 | 2023-06-06 | トヨタ自動車株式会社 | 車両および車両制御インターフェース |
| CA3177293A1 (en) | 2020-06-22 | 2021-12-30 | Illumina Cambridge Limited | Nucleosides and nucleotides with 3' acetal blocking group |
| US11981964B2 (en) | 2020-07-28 | 2024-05-14 | Illumina Cambridge Limited | Substituted coumarin dyes and uses as fluorescent labels |
| US20220195196A1 (en) | 2020-12-17 | 2022-06-23 | Illumina Cambridge Limited | Alkylpyridinium coumarin dyes and uses in sequencing applications |
| US20220195516A1 (en) | 2020-12-17 | 2022-06-23 | Illumina Cambridge Limited | Methods, systems and compositions for nucleic acid sequencing |
| US20220195517A1 (en) | 2020-12-17 | 2022-06-23 | Illumina Cambridge Limited | Long stokes shift chromenoquinoline dyes and uses in sequencing applications |
| US20220195518A1 (en) | 2020-12-22 | 2022-06-23 | Illumina Cambridge Limited | Methods and compositions for nucleic acid sequencing |
| EP4334327A1 (en) | 2021-05-05 | 2024-03-13 | Illumina Cambridge Limited | Fluorescent dyes containing bis-boron fused heterocycles and uses in sequencing |
| IL308173A (en) | 2021-05-20 | 2024-01-01 | Illumina Inc | Compositions and methods for genetic sequencing by synthesis |
| WO2022251032A1 (en) * | 2021-05-26 | 2022-12-01 | Illumina, Inc. | Purifying and polymerizing 3'-blocked nucleotides |
| WO2023186815A1 (en) | 2022-03-28 | 2023-10-05 | Illumina Cambridge Limited | Labeled avidin and methods for sequencing |
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| EP4499870A1 (en) | 2022-03-31 | 2025-02-05 | Illumina, Inc. | Compositions and methods for improving sequencing signals |
| AU2023244351A1 (en) | 2022-03-31 | 2024-01-18 | Illumina, Inc. | Nucleosides and nucleotides with 3' vinyl blocking group useful in sequencing by synthesis |
| US20230383342A1 (en) | 2022-05-31 | 2023-11-30 | Illumina Cambridge Limited | Compositions and methods for nucleic acid sequencing |
| AU2023296605A1 (en) | 2022-06-28 | 2025-01-09 | Illumina, Inc. | Fluorescent dyes containing fused tetracyclic bis-boron heterocycle and uses in sequencing |
| CN119213083A (zh) | 2022-09-30 | 2024-12-27 | 伊路米纳有限公司 | 用于减少测序期间的光损伤的组合物和方法 |
| CA3246536A1 (en) | 2022-12-22 | 2024-06-27 | Illumina Inc | TRANSITION METAL CATALYST COMPOSITIONS AND SYNTHETIC SEQUENCE PROCESSES |
| AU2023409219A1 (en) | 2022-12-22 | 2024-10-03 | Illumina, Inc. | Palladium catalyst compositions and methods for sequencing by synthesis |
| CA3246559A1 (en) | 2022-12-27 | 2024-07-04 | Illumina Inc | SEQUENCE PROCESSES USING ALLYL 3' BLOCKED NUCLEOTIDES |
| US20240327910A1 (en) | 2023-03-29 | 2024-10-03 | Illumina, Inc. | Naphthalimide dyes and uses in nucleic acid sequencing |
| CN119452101A (zh) | 2023-03-30 | 2025-02-14 | 因美纳公司 | 用于核酸测序的组合物和方法 |
| WO2025049700A1 (en) | 2023-08-31 | 2025-03-06 | Illumina, Inc. | Compositions and methods for nucleic acid sequencing |
| WO2025090596A1 (en) | 2023-10-26 | 2025-05-01 | Illumina, Inc. | 4,5-substituted naphthalimide dyes and uses in nucleic acid sequencing |
| WO2025106715A1 (en) | 2023-11-17 | 2025-05-22 | Illumina, Inc. | Conjugated polymers or polymer dots as fluorescent labels |
| WO2025136890A1 (en) | 2023-12-18 | 2025-06-26 | Illumina, Inc. | Hydrogel nanoparticles as labeling scaffold in sequencing |
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| WO2025221895A1 (en) | 2024-04-19 | 2025-10-23 | Illumina, Inc. | Water soluble polymer scaffolds for dye labeling |
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