CA2947426C - Multiplexed single cell gene expression analysis using template switch and tagmentation - Google Patents

Multiplexed single cell gene expression analysis using template switch and tagmentation Download PDF

Info

Publication number
CA2947426C
CA2947426C CA2947426A CA2947426A CA2947426C CA 2947426 C CA2947426 C CA 2947426C CA 2947426 A CA2947426 A CA 2947426A CA 2947426 A CA2947426 A CA 2947426A CA 2947426 C CA2947426 C CA 2947426C
Authority
CA
Canada
Prior art keywords
droplet
cdna
strand synthesis
sequence
primer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CA2947426A
Other languages
English (en)
French (fr)
Other versions
CA2947426A1 (en
Inventor
Fiona Kaper
Jian-Bing Fan
Neeraj SALATHIA
Gordon M. CANN
Arash Jamshidi
Alex Aravanis
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Illumina Inc
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Inc filed Critical Illumina Inc
Priority to CA3060708A priority Critical patent/CA3060708A1/en
Publication of CA2947426A1 publication Critical patent/CA2947426A1/en
Application granted granted Critical
Publication of CA2947426C publication Critical patent/CA2947426C/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1065Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1096Processes for the isolation, preparation or purification of DNA or RNA cDNA Synthesis; Subtracted cDNA library construction, e.g. RT, RT-PCR
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B50/00Methods of creating libraries, e.g. combinatorial synthesis
    • C40B50/06Biochemical methods, e.g. using enzymes or whole viable microorganisms

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biomedical Technology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • General Chemical & Material Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CA2947426A 2014-04-29 2015-04-28 Multiplexed single cell gene expression analysis using template switch and tagmentation Active CA2947426C (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CA3060708A CA3060708A1 (en) 2014-04-29 2015-04-28 Multiplexed single cell gene expression analysis using template switch and tagmentation

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US201461985983P 2014-04-29 2014-04-29
US61/985,983 2014-04-29
US201461987433P 2014-05-01 2014-05-01
US61/987,433 2014-05-01
PCT/US2015/028062 WO2015168161A2 (en) 2014-04-29 2015-04-28 Multiplexed single cell gene expression analysis using template switch and tagmentation

Related Child Applications (1)

Application Number Title Priority Date Filing Date
CA3060708A Division CA3060708A1 (en) 2014-04-29 2015-04-28 Multiplexed single cell gene expression analysis using template switch and tagmentation

Publications (2)

Publication Number Publication Date
CA2947426A1 CA2947426A1 (en) 2015-11-05
CA2947426C true CA2947426C (en) 2020-01-07

Family

ID=53055134

Family Applications (2)

Application Number Title Priority Date Filing Date
CA2947426A Active CA2947426C (en) 2014-04-29 2015-04-28 Multiplexed single cell gene expression analysis using template switch and tagmentation
CA3060708A Pending CA3060708A1 (en) 2014-04-29 2015-04-28 Multiplexed single cell gene expression analysis using template switch and tagmentation

Family Applications After (1)

Application Number Title Priority Date Filing Date
CA3060708A Pending CA3060708A1 (en) 2014-04-29 2015-04-28 Multiplexed single cell gene expression analysis using template switch and tagmentation

Country Status (8)

Country Link
US (2) US20170044525A1 (de)
EP (2) EP3137601B1 (de)
JP (1) JP6412954B2 (de)
CN (1) CN106459967A (de)
AU (4) AU2015253299B2 (de)
CA (2) CA2947426C (de)
SG (2) SG11201609053YA (de)
WO (1) WO2015168161A2 (de)

Families Citing this family (95)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8835358B2 (en) 2009-12-15 2014-09-16 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse labels
US10466160B2 (en) 2011-08-01 2019-11-05 Celsee Diagnostics, Inc. System and method for retrieving and analyzing particles
US9404864B2 (en) 2013-03-13 2016-08-02 Denovo Sciences, Inc. System for imaging captured cells
ES2797448T3 (es) 2011-08-01 2020-12-02 Bio Rad Laboratories Sistema de captura de células
AU2013226081B2 (en) 2012-02-27 2018-06-14 Becton, Dickinson And Company Compositions and kits for molecular counting
US9606102B2 (en) 2013-01-26 2017-03-28 Denovo Sciences, Inc. System and method for capturing and analyzing cells
US9707562B2 (en) 2013-03-13 2017-07-18 Denovo Sciences, Inc. System for capturing and analyzing cells
US10391490B2 (en) 2013-05-31 2019-08-27 Celsee Diagnostics, Inc. System and method for isolating and analyzing cells
US9856535B2 (en) 2013-05-31 2018-01-02 Denovo Sciences, Inc. System for isolating cells
WO2015031691A1 (en) 2013-08-28 2015-03-05 Cellular Research, Inc. Massively parallel single cell analysis
US10975371B2 (en) 2014-04-29 2021-04-13 Illumina, Inc. Nucleic acid sequence analysis from single cells
ES2836802T3 (es) 2015-02-27 2021-06-28 Becton Dickinson Co Códigos de barras moleculares espacialmente direccionables
ES2934982T3 (es) 2015-03-30 2023-02-28 Becton Dickinson Co Métodos para la codificación con códigos de barras combinatorios
WO2016172373A1 (en) 2015-04-23 2016-10-27 Cellular Research, Inc. Methods and compositions for whole transcriptome amplification
CA2997035A1 (en) * 2015-08-28 2017-03-09 Illumina, Inc. Nucleic acid sequence analysis from single cells
JP6940484B2 (ja) 2015-09-11 2021-09-29 セルラー リサーチ, インコーポレイテッド ライブラリー正規化のための方法および組成物
EP3350732A4 (de) * 2015-09-15 2019-02-27 Takara Bio USA, Inc. Verfahren zur erzeugung einer bibliothek mit sequenzierung der nächsten generation (ngs) aus einer ribonukleinsäure (rna)-probe und zusammensetzungen zur durchführung davon
CN105926043B (zh) * 2016-04-19 2018-08-28 苏州贝康医疗器械有限公司 一种提高孕妇血浆游离dna测序文库中胎儿游离dna占比的方法
US10301677B2 (en) 2016-05-25 2019-05-28 Cellular Research, Inc. Normalization of nucleic acid libraries
WO2017204294A1 (ja) * 2016-05-25 2017-11-30 株式会社ニコン 標的生体分子の特定方法、標的生体分子特定用ビーズ、ビーズのセット、及び標的生体分子特定装置
US10202641B2 (en) 2016-05-31 2019-02-12 Cellular Research, Inc. Error correction in amplification of samples
US10640763B2 (en) 2016-05-31 2020-05-05 Cellular Research, Inc. Molecular indexing of internal sequences
US11293021B1 (en) 2016-06-23 2022-04-05 Inscripta, Inc. Automated cell processing methods, modules, instruments, and systems
CA3033506A1 (en) * 2016-08-10 2018-02-15 President And Fellows Of Harvard College Methods of de novo assembly of barcoded genomic dna fragments
SG11201901733PA (en) 2016-09-26 2019-04-29 Cellular Res Inc Measurement of protein expression using reagents with barcoded oligonucleotide sequences
CN110312825A (zh) 2016-10-24 2019-10-08 吉内恩福赛克公司 隐藏核酸内存在的信息
US20180127819A1 (en) * 2016-11-09 2018-05-10 Qiagen Waltham, Inc. Enhancing Sequencing Performance in Sequencing-by-Synthesis
EP3559255A1 (de) 2016-12-23 2019-10-30 Grail, Inc. Verfahren zur hocheffizienten bibliothek-herstellung unter verwendung von doppelsträngigen adaptern
US10711269B2 (en) * 2017-01-18 2020-07-14 Agilent Technologies, Inc. Method for making an asymmetrically-tagged sequencing library
CN110382708A (zh) 2017-02-01 2019-10-25 赛卢拉研究公司 使用阻断性寡核苷酸进行选择性扩增
WO2018152129A1 (en) * 2017-02-16 2018-08-23 Takara Bio Usa, Inc. Methods of preparing nucleic acid libraries and compositions and kits for practicing the same
US11274344B2 (en) 2017-03-30 2022-03-15 Grail, Inc. Enhanced ligation in sequencing library preparation
US11118222B2 (en) 2017-03-31 2021-09-14 Grail, Inc. Higher target capture efficiency using probe extension
US10676779B2 (en) 2017-06-05 2020-06-09 Becton, Dickinson And Company Sample indexing for single cells
CN107502607A (zh) * 2017-06-20 2017-12-22 浙江大学 一种大量组织、细胞样本mRNA的分子条形码标记、文库构建、测序的方法
US9982279B1 (en) 2017-06-23 2018-05-29 Inscripta, Inc. Nucleic acid-guided nucleases
US10011849B1 (en) 2017-06-23 2018-07-03 Inscripta, Inc. Nucleic acid-guided nucleases
JP7160349B2 (ja) * 2017-06-23 2022-10-25 国立研究開発法人理化学研究所 核酸をシークエンシングする方法および解析する方法
HRP20220615T1 (hr) 2017-06-30 2022-06-24 Inscripta, Inc. Postupci, moduli, instrumenti i sustavi za automatiziranu obradu stanica
US10391493B2 (en) 2017-08-29 2019-08-27 Celsee Diagnostics, Inc. System and method for isolating and analyzing cells
WO2019061196A1 (zh) * 2017-09-28 2019-04-04 深圳华大生命科学研究院 一种用于检测的pcr引物及其应用
JP2021509024A (ja) * 2018-01-02 2021-03-18 ザ リージェンツ オブ ザ ユニバーシティ オブ ミシガン 多数の液滴の捕捉
CA3096161A1 (en) * 2018-03-28 2019-10-03 Berkeley Lights, Inc. Methods for preparation of nucleic acid sequencing libraries
US10557216B2 (en) 2018-04-24 2020-02-11 Inscripta, Inc. Automated instrumentation for production of T-cell receptor peptide libraries
US10858761B2 (en) 2018-04-24 2020-12-08 Inscripta, Inc. Nucleic acid-guided editing of exogenous polynucleotides in heterologous cells
EP3788171B1 (de) 2018-05-03 2023-04-05 Becton, Dickinson and Company Multiomics-probenanalyse mit hohem durchsatz
US11365409B2 (en) 2018-05-03 2022-06-21 Becton, Dickinson And Company Molecular barcoding on opposite transcript ends
CN108611346A (zh) * 2018-05-06 2018-10-02 湖南大地同年生物科技有限公司 一种单细胞基因表达量检测文库的构建方法
WO2020005383A1 (en) 2018-06-30 2020-01-02 Inscripta, Inc. Instruments, modules, and methods for improved detection of edited sequences in live cells
DK3821011T3 (da) * 2018-07-11 2023-07-24 Cygnus Biosciences Beijing Co Ltd Transposom-aktiveret dna/rna-sekventering (ted rna-seq)
WO2020036991A1 (en) * 2018-08-15 2020-02-20 Illumina, Inc. Compositions and methods for improving library enrichment
CN110835783B (zh) * 2018-08-17 2023-06-20 深圳华大生命科学研究院 用于长读长高质量测序的核酸文库的构建方法、测序方法及试剂
WO2020041293A1 (en) * 2018-08-20 2020-02-27 Bio-Rad Laboratories, Inc. Nucleotide sequence generation by barcode bead-colocalization in partitions
US11639517B2 (en) 2018-10-01 2023-05-02 Becton, Dickinson And Company Determining 5′ transcript sequences
WO2020092591A1 (en) * 2018-11-01 2020-05-07 Illumina, Inc. Methods and compositions for somatic variant detection
WO2020097315A1 (en) 2018-11-08 2020-05-14 Cellular Research, Inc. Whole transcriptome analysis of single cells using random priming
BR112021006183A2 (pt) * 2018-11-30 2021-06-29 Illumina, Inc. análise de múltiplos analitos com o uso de um único ensaio
WO2020123384A1 (en) 2018-12-13 2020-06-18 Cellular Research, Inc. Selective extension in single cell whole transcriptome analysis
SG11202102424QA (en) * 2018-12-17 2021-04-29 Illumina Inc Methods and means for preparing a library for sequencing
CN113166797B (zh) * 2018-12-21 2024-04-12 Illumina公司 基于核酸酶的rna耗尽
ES2945227T3 (es) 2019-01-23 2023-06-29 Becton Dickinson Co Oligonucleótidos asociados con anticuerpos
CN113631713A (zh) 2019-03-25 2021-11-09 因思科瑞普特公司 酵母中的同时多重基因组编辑
US11001831B2 (en) 2019-03-25 2021-05-11 Inscripta, Inc. Simultaneous multiplex genome editing in yeast
US10633693B1 (en) 2019-04-16 2020-04-28 Celsee Diagnostics, Inc. System and method for leakage control in a particle capture system
US11273439B2 (en) 2019-05-07 2022-03-15 Bio-Rad Laboratories, Inc. System and method for target material retrieval from microwells
US10900032B2 (en) 2019-05-07 2021-01-26 Bio-Rad Laboratories, Inc. System and method for automated single cell processing
CA3139122C (en) 2019-06-06 2023-04-25 Inscripta, Inc. Curing for recursive nucleic acid-guided cell editing
KR20220033484A (ko) 2019-06-14 2022-03-16 바이오 래드 래버러토리스 인코오포레이티드 자동화된 단일 세포 처리 및 분석을 위한 시스템 및 방법
CN110257479A (zh) * 2019-06-25 2019-09-20 北京全式金生物技术有限公司 一种快速构建rna 3’端基因表达文库的方法
EP4004231A1 (de) 2019-07-22 2022-06-01 Becton, Dickinson and Company Test für einzelzell-chromatin-immunpräzipitationssequenzierung
JP7306155B2 (ja) 2019-08-22 2023-07-11 スズキ株式会社 車両用動力伝達装置
EP4055160B1 (de) 2019-11-08 2024-04-10 Becton Dickinson and Company Verwendung von random-rpiming zur gewinnung von v(d)j-informationen in voller länge für immunrepertoiresequenzierung
US11203762B2 (en) 2019-11-19 2021-12-21 Inscripta, Inc. Methods for increasing observed editing in bacteria
JP2023507566A (ja) 2019-12-18 2023-02-24 インスクリプタ, インコーポレイテッド 核酸誘導ヌクレアーゼ編集済み細胞のin vivo検出のためのカスケード/dCas3相補性アッセイ
CN115244184A (zh) 2020-01-13 2022-10-25 贝克顿迪金森公司 用于定量蛋白和rna的方法和组合物
WO2021147069A1 (zh) * 2020-01-23 2021-07-29 青岛华大智造普惠科技有限公司 基于液滴微流控的单细胞测序及应用
WO2021154706A1 (en) 2020-01-27 2021-08-05 Inscripta, Inc. Electroporation modules and instrumentation
US11504719B2 (en) 2020-03-12 2022-11-22 Bio-Rad Laboratories, Inc. System and method for receiving and delivering a fluid for sample processing
US20210332388A1 (en) 2020-04-24 2021-10-28 Inscripta, Inc. Compositions, methods, modules and instruments for automated nucleic acid-guided nuclease editing in mammalian cells
EP4150118A1 (de) 2020-05-14 2023-03-22 Becton Dickinson and Company Primer zur profilierung von immunrepertoire
US20210381007A1 (en) * 2020-06-04 2021-12-09 Inscripta, Inc. Methods and compositions for crispr editing of cells and correlating the edits to a resulting cellular nucleic acid profile
US11932901B2 (en) 2020-07-13 2024-03-19 Becton, Dickinson And Company Target enrichment using nucleic acid probes for scRNAseq
WO2022021279A1 (zh) * 2020-07-31 2022-02-03 北京寻因生物科技有限公司 多种核酸共标记支持物及其制作方法与应用
BR112023002051A2 (pt) 2020-08-06 2023-04-18 Illumina Inc Preparação de bibliotecas de sequenciamento de rna e dna usando transpossomos ligados a microesferas
US11299731B1 (en) 2020-09-15 2022-04-12 Inscripta, Inc. CRISPR editing to embed nucleic acid landing pads into genomes of live cells
WO2022067494A1 (en) * 2020-09-29 2022-04-07 Singleron (Nanjing) Biotechnologies, Ltd. Method for detection of whole transcriptome in single cells
US11512297B2 (en) 2020-11-09 2022-11-29 Inscripta, Inc. Affinity tag for recombination protein recruitment
EP4247967A1 (de) 2020-11-20 2023-09-27 Becton, Dickinson and Company Profilierung von stark exprimierten und schwach exprimierten proteinen
AU2021415461A1 (en) 2021-01-04 2023-08-17 Inscripta, Inc. Mad nucleases
US11332742B1 (en) 2021-01-07 2022-05-17 Inscripta, Inc. Mad nucleases
US11884924B2 (en) 2021-02-16 2024-01-30 Inscripta, Inc. Dual strand nucleic acid-guided nickase editing
WO2022188054A1 (en) * 2021-03-10 2022-09-15 Nanjing University Methods and reagents for sample multiplexing for high throughput single-cell rna sequencing
IL307164A (en) 2021-03-31 2023-11-01 Illumina Inc Methods for preparing sequence libraries for directional labeling using transposon-based technology with unique molecular identifiers for error correction
JP2024520804A (ja) * 2021-06-11 2024-05-24 セラノーム, インコーポレイテッド 生体試料を分析するためのシステムおよび方法
WO2023159416A1 (zh) * 2022-02-24 2023-08-31 浙江大学 一种单细胞转录组测序方法及其应用

Family Cites Families (73)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2044616A1 (en) 1989-10-26 1991-04-27 Roger Y. Tsien Dna sequencing
US5677170A (en) 1994-03-02 1997-10-14 The Johns Hopkins University In vitro transposition of artificial transposons
WO1997014028A2 (en) 1995-10-11 1997-04-17 Luminex Corporation Multiplexed analysis of clinical specimens apparatus and method
AU1203199A (en) 1997-11-18 1999-06-07 Bio-Rad Laboratories, Inc. Multiplex flow immunoassays with magnetic particles as solid phase
US6565727B1 (en) 1999-01-25 2003-05-20 Nanolytics, Inc. Actuators for microfluidics without moving parts
US6294063B1 (en) 1999-02-12 2001-09-25 Board Of Regents, The University Of Texas System Method and apparatus for programmable fluidic processing
US6277607B1 (en) * 1999-05-24 2001-08-21 Sanjay Tyagi High specificity primers, amplification methods and kits
EP1204869B1 (de) 1999-08-17 2008-10-22 Luminex Corporation Verfahren zur analyse einer mehrzahl von proben verschiedenen ursprungs auf einen analyten
ATE324588T1 (de) 1999-08-17 2006-05-15 Luminex Corp Verkapselung von fluoreszierenden partikeln
EP1368460B1 (de) 2000-07-07 2007-10-31 Visigen Biotechnologies, Inc. Sequenzbestimmung in echtzeit
WO2002007503A1 (en) 2000-07-25 2002-01-31 The Regents Of The University Of California Electrowetting-driven micropumping
US6773566B2 (en) 2000-08-31 2004-08-10 Nanolytics, Inc. Electrostatic actuators for microfluidics and methods for using same
EP1354064A2 (de) 2000-12-01 2003-10-22 Visigen Biotechnologies, Inc. Enzymatische nukleinsäuresynthese: zusammensetzungen und verfahren, um die zuverlässigkeit des monomereinbaus zu erhöhen
EP1450956A2 (de) 2001-11-26 2004-09-01 Keck Graduate Institute Verfahren und vorrichtung zur mikrofluidischen kontrolle durch elektrowetting für chemische, biochemische und biologische proben
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
FR2841063B1 (fr) 2002-06-18 2004-09-17 Commissariat Energie Atomique Dispositif de deplacement de petits volumes de liquide le long d'un micro-catenaire par des forces electrostatiques
SI3002289T1 (en) 2002-08-23 2018-07-31 Illumina Cambridge Limited MODIFIED NUCLEOTES FOR POLYUCULOTIDE SEQUENCING
US6911132B2 (en) 2002-09-24 2005-06-28 Duke University Apparatus for manipulating droplets by electrowetting-based techniques
US7547380B2 (en) 2003-01-13 2009-06-16 North Carolina State University Droplet transportation devices and methods having a fluid surface
US9045796B2 (en) * 2003-06-20 2015-06-02 Illumina, Inc. Methods and compositions for whole genome amplification and genotyping
JP4838723B2 (ja) 2003-10-24 2011-12-14 アドヒーシブズ・リサーチ・インコーポレイテッド 医薬又は化粧用薬剤を送達するための迅速分解性フイルム
CN100478075C (zh) 2003-11-17 2009-04-15 皇家飞利浦电子股份有限公司 用于操纵流体实体的系统
GB0400584D0 (en) 2004-01-12 2004-02-11 Solexa Ltd Nucleic acid chacterisation
EP1704402B1 (de) 2004-01-14 2016-05-11 Luminex Corporation Verfahren und systeme zur dynamischen bereichserweiterung
FR2866493B1 (fr) 2004-02-16 2010-08-20 Commissariat Energie Atomique Dispositif de controle du deplacement d'une goutte entre deux ou plusieurs substrats solides
FR2872715B1 (fr) 2004-07-08 2006-11-17 Commissariat Energie Atomique Microreacteur goutte
FR2872809B1 (fr) 2004-07-09 2006-09-15 Commissariat Energie Atomique Methode d'adressage d'electrodes
JP2006058031A (ja) 2004-08-17 2006-03-02 Hitachi High-Technologies Corp 化学分析装置
EP3415641B1 (de) 2004-09-17 2023-11-01 Pacific Biosciences Of California, Inc. Verfahren zur analyse von molekülen
ATE476744T1 (de) 2005-01-20 2010-08-15 Luminex Corp Mikrokugeln mit fluoreszente und magnetische eigenschaften
US7458661B2 (en) 2005-01-25 2008-12-02 The Regents Of The University Of California Method and apparatus for promoting the complete transfer of liquid drops from a nozzle
BRPI0607213B1 (pt) 2005-01-28 2017-04-04 Univ Duke aparelho para manipulação de gotículas em uma placa de circuito impresso
US20070023292A1 (en) 2005-07-26 2007-02-01 The Regents Of The University Of California Small object moving on printed circuit board
WO2007035840A2 (en) 2005-09-21 2007-03-29 Luminex Corporation Methods and systems for image data processing
US7405281B2 (en) 2005-09-29 2008-07-29 Pacific Biosciences Of California, Inc. Fluorescent nucleotide analogs and uses therefor
WO2007103859A2 (en) 2006-03-03 2007-09-13 Luminex Corporation Methods, products, and kits for identifying an analyte in a sample
SG170802A1 (en) 2006-03-31 2011-05-30 Solexa Inc Systems and devices for sequence by synthesis analysis
WO2010027894A2 (en) 2008-08-27 2010-03-11 Advanced Liquid Logic, Inc. Droplet actuators, modified fluids and methods
US7439014B2 (en) 2006-04-18 2008-10-21 Advanced Liquid Logic, Inc. Droplet-based surface modification and washing
US7901947B2 (en) 2006-04-18 2011-03-08 Advanced Liquid Logic, Inc. Droplet-based particle sorting
EP2016189B1 (de) 2006-04-18 2012-01-25 Advanced Liquid Logic, Inc. Pyrosequenzierung auf tröpfchenbasis
WO2008007511A1 (fr) 2006-07-10 2008-01-17 Hitachi High-Technologies Corporation Dispositif de transfert de liquide
WO2008042067A2 (en) 2006-09-28 2008-04-10 Illumina, Inc. Compositions and methods for nucleotide sequencing
US8343746B2 (en) 2006-10-23 2013-01-01 Pacific Biosciences Of California, Inc. Polymerase enzymes and reagents for enhanced nucleic acid sequencing
WO2008055256A2 (en) 2006-11-02 2008-05-08 The Regents Of The University Of California Method and apparatus for real-time feedback control of electrical manipulation of droplets on chip
JP5479910B2 (ja) 2006-12-13 2014-04-23 ルミネックス コーポレーション Pcrのリアルタイムでの多重分析のためのシステムおよび方法
WO2008093098A2 (en) 2007-02-02 2008-08-07 Illumina Cambridge Limited Methods for indexing samples and sequencing multiple nucleotide templates
WO2008098236A2 (en) 2007-02-09 2008-08-14 Advanced Liquid Logic, Inc. Droplet actuator devices and methods employing magnetic beads
WO2008101194A2 (en) 2007-02-15 2008-08-21 Advanced Liquid Logic, Inc. Capacitance detection in a droplet actuator
WO2008116221A1 (en) 2007-03-22 2008-09-25 Advanced Liquid Logic, Inc. Bead sorting on a droplet actuator
US8093062B2 (en) 2007-03-22 2012-01-10 Theodore Winger Enzymatic assays using umbelliferone substrates with cyclodextrins in droplets in oil
WO2008134153A1 (en) 2007-04-23 2008-11-06 Advanced Liquid Logic, Inc. Bead-based multiplexed analytical methods and instrumentation
US20080283414A1 (en) 2007-05-17 2008-11-20 Monroe Charles W Electrowetting devices
CN101679932A (zh) 2007-06-27 2010-03-24 数字化生物系统 用于热交换化学过程的基于数字微流体的装置
US20110303542A1 (en) 2007-08-08 2011-12-15 Advanced Liquid Logic, Inc. Use of Additives for Enhancing Droplet Operations
US8093064B2 (en) 2008-05-15 2012-01-10 The Regents Of The University Of California Method for using magnetic particles in droplet microfluidics
US9080211B2 (en) * 2008-10-24 2015-07-14 Epicentre Technologies Corporation Transposon end compositions and methods for modifying nucleic acids
ES2515065T3 (es) 2008-10-24 2014-10-29 Epicentre Technologies Corporation Composiciones de extremo del transposón y métodos para modificar ácidos nucleicos
WO2010077859A2 (en) * 2008-12-15 2010-07-08 Advanced Liquid Logic, Inc. Nucleic acid amplification and sequencing on a droplet actuator
EP3002337B1 (de) * 2009-03-30 2018-10-24 Illumina, Inc. Genexpressionsanalyse in einzelzellen
WO2011002957A2 (en) 2009-07-01 2011-01-06 Advanced Liquid Logic, Inc. Droplet actuator devices and methods
GB2512213B (en) 2010-10-08 2015-02-11 Harvard College High-throughput single cell barcoding
ES2774447T3 (es) * 2010-10-27 2020-07-21 Harvard College Métodos de uso de cebador de horquilla de extremos cohesivos
ES2625288T3 (es) 2011-04-15 2017-07-19 The Johns Hopkins University Sistema de secuenciación segura
US9005935B2 (en) 2011-05-23 2015-04-14 Agilent Technologies, Inc. Methods and compositions for DNA fragmentation and tagging by transposases
US8778848B2 (en) 2011-06-09 2014-07-15 Illumina, Inc. Patterned flow-cells useful for nucleic acid analysis
WO2013085918A1 (en) 2011-12-05 2013-06-13 The Regents Of The University Of California Methods and compostions for generating polynucleic acid fragments
WO2013117595A2 (en) 2012-02-07 2013-08-15 Illumina Cambridge Limited Targeted enrichment and amplification of nucleic acids on a support
NO2694769T3 (de) 2012-03-06 2018-03-03
EP2898096B1 (de) * 2012-09-21 2024-02-14 The Broad Institute, Inc. Verfahren zur markierung von rns
WO2014201273A1 (en) * 2013-06-12 2014-12-18 The Broad Institute, Inc. High-throughput rna-seq
WO2015031691A1 (en) * 2013-08-28 2015-03-05 Cellular Research, Inc. Massively parallel single cell analysis
PT3089822T (pt) * 2013-12-30 2022-05-06 Atreca Inc Análise de ácidos nucleicos associados com células isoladas usando códigos de barras de ácido nucleico

Also Published As

Publication number Publication date
SG10201912516SA (en) 2020-02-27
AU2021203246A1 (en) 2021-06-10
AU2024201323A1 (en) 2024-03-21
EP3137601B1 (de) 2020-04-08
AU2015253299B2 (en) 2018-06-14
US20170044525A1 (en) 2017-02-16
CA2947426A1 (en) 2015-11-05
SG11201609053YA (en) 2016-11-29
AU2021203246B2 (en) 2023-11-30
AU2015253299A1 (en) 2016-11-17
AU2018226493A1 (en) 2018-09-27
CA3060708A1 (en) 2015-11-05
EP3680333A1 (de) 2020-07-15
EP3137601A2 (de) 2017-03-08
WO2015168161A2 (en) 2015-11-05
CN106459967A (zh) 2017-02-22
AU2018226493B2 (en) 2021-02-25
US20210079386A1 (en) 2021-03-18
JP6412954B2 (ja) 2018-10-24
JP2017514487A (ja) 2017-06-08
WO2015168161A3 (en) 2015-12-30

Similar Documents

Publication Publication Date Title
AU2021203246B2 (en) Multiplexed single cell gene expression analysis using template switch and tagmentation
AU2020201685B2 (en) Nucleic acid sequence analysis from single cells
US20210198659A1 (en) Nucleic Acid Sequence Analysis from Single Cells
US20150038344A1 (en) Method of Preparing a Nucleic Acid Library
EP3440220B1 (de) Verfahren und systeme zur herstellung von normalisierten nukleinsäure-bibliotheken
WO2014106167A1 (en) Digital microfluidic gene synthesis and error correction

Legal Events

Date Code Title Description
EEER Examination request

Effective date: 20161028