CA2495881C - Evolving new molecular function - Google Patents
Evolving new molecular function Download PDFInfo
- Publication number
- CA2495881C CA2495881C CA2495881A CA2495881A CA2495881C CA 2495881 C CA2495881 C CA 2495881C CA 2495881 A CA2495881 A CA 2495881A CA 2495881 A CA2495881 A CA 2495881A CA 2495881 C CA2495881 C CA 2495881C
- Authority
- CA
- Canada
- Prior art keywords
- codon
- template
- reactions
- reactive
- reaction
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Fee Related
Links
- 0 CC(C1)C2C1*CC2 Chemical compound CC(C1)C2C1*CC2 0.000 description 30
- SFGDJBKLAFFLPZ-XVNBXDOJSA-N C/C=C(\C)/OCCNC(CN)=O Chemical compound C/C=C(\C)/OCCNC(CN)=O SFGDJBKLAFFLPZ-XVNBXDOJSA-N 0.000 description 1
- PPBRXRYQALVLMV-UHFFFAOYSA-N C=Cc1ccccc1 Chemical compound C=Cc1ccccc1 PPBRXRYQALVLMV-UHFFFAOYSA-N 0.000 description 1
- WXUFEVRLRPBRFB-BAQGIRSFSA-N CC(/C=C\C(NCC(CC1)CCC1C(NSC)=O)=O)=O Chemical compound CC(/C=C\C(NCC(CC1)CCC1C(NSC)=O)=O)=O WXUFEVRLRPBRFB-BAQGIRSFSA-N 0.000 description 1
- NSYLLLBYDWKGLQ-UXBLZVDNSA-N CCC(C)N/C(/C1(O)OC1)=C/C(C)C Chemical compound CCC(C)N/C(/C1(O)OC1)=C/C(C)C NSYLLLBYDWKGLQ-UXBLZVDNSA-N 0.000 description 1
- FATGEZNKVIWUAZ-UHFFFAOYSA-N CCC(C)NC(C(C)C)C(O)=O Chemical compound CCC(C)NC(C(C)C)C(O)=O FATGEZNKVIWUAZ-UHFFFAOYSA-N 0.000 description 1
- VDJFIRMIGCJKIY-UHFFFAOYSA-N CCC(C)NC(C)(Cc1ccccc1)C(O)=O Chemical compound CCC(C)NC(C)(Cc1ccccc1)C(O)=O VDJFIRMIGCJKIY-UHFFFAOYSA-N 0.000 description 1
- KQGGSIVREYUZNW-UHFFFAOYSA-N CCC(C)NC1(CCCCC1)C(O)=O Chemical compound CCC(C)NC1(CCCCC1)C(O)=O KQGGSIVREYUZNW-UHFFFAOYSA-N 0.000 description 1
- SVYHKXXSYMEQMW-LADRWXRNSA-N CCC(C)N[C@](C)(CC(C)C)C(NCC(NCCOC(C)CC)=O)=O Chemical compound CCC(C)N[C@](C)(CC(C)C)C(NCC(NCCOC(C)CC)=O)=O SVYHKXXSYMEQMW-LADRWXRNSA-N 0.000 description 1
- JYDJIWMIMPVZQL-UHFFFAOYSA-N CCC(C)OCCNC(C(C=C)N)=O Chemical compound CCC(C)OCCNC(C(C=C)N)=O JYDJIWMIMPVZQL-UHFFFAOYSA-N 0.000 description 1
- DNHRCQGTYADOCS-VQCBNXJZSA-N CC[C@@H](C)OCCNC(/C(/N)=C/CCc1ccccc1)=O Chemical compound CC[C@@H](C)OCCNC(/C(/N)=C/CCc1ccccc1)=O DNHRCQGTYADOCS-VQCBNXJZSA-N 0.000 description 1
- LUTWIWPYJBPLFU-SSDOTTSWSA-N CC[C@@H](C)OCCNC(CN)=O Chemical compound CC[C@@H](C)OCCNC(CN)=O LUTWIWPYJBPLFU-SSDOTTSWSA-N 0.000 description 1
- RPAPJUGRVPQRJK-UHFFFAOYSA-N CNC(c1ccc(CO)cc1)=O Chemical compound CNC(c1ccc(CO)cc1)=O RPAPJUGRVPQRJK-UHFFFAOYSA-N 0.000 description 1
- VXCIUMSHLJFHKJ-UHFFFAOYSA-O CSNC(CCCCCCC([OH2+])=O)=O Chemical compound CSNC(CCCCCCC([OH2+])=O)=O VXCIUMSHLJFHKJ-UHFFFAOYSA-O 0.000 description 1
- YXFVVABEGXRONW-UHFFFAOYSA-N Cc1ccccc1 Chemical compound Cc1ccccc1 YXFVVABEGXRONW-UHFFFAOYSA-N 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1068—Template (nucleic acid) mediated chemical library synthesis, e.g. chemical and enzymatical DNA-templated organic molecule synthesis, libraries prepared by non ribosomal polypeptide synthesis [NRPS], DNA/RNA-polymerase mediated polypeptide synthesis
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Genetics & Genomics (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Biomedical Technology (AREA)
- General Health & Medical Sciences (AREA)
- Bioinformatics & Computational Biology (AREA)
- Analytical Chemistry (AREA)
- Crystallography & Structural Chemistry (AREA)
- Immunology (AREA)
- Plant Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Saccharide Compounds (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Organic Low-Molecular-Weight Compounds And Preparation Thereof (AREA)
Applications Claiming Priority (15)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US40439502P | 2002-08-19 | 2002-08-19 | |
| US60/404,395 | 2002-08-19 | ||
| US41966702P | 2002-10-18 | 2002-10-18 | |
| US60/419,667 | 2002-10-18 | ||
| US43281202P | 2002-12-11 | 2002-12-11 | |
| US60/432,812 | 2002-12-11 | ||
| US44477003P | 2003-02-04 | 2003-02-04 | |
| US60/444,770 | 2003-02-04 | ||
| US45778903P | 2003-03-26 | 2003-03-26 | |
| US60/457,789 | 2003-03-26 | ||
| US46986603P | 2003-05-12 | 2003-05-12 | |
| US60/469,866 | 2003-05-12 | ||
| US47949403P | 2003-06-18 | 2003-06-18 | |
| US60/479,494 | 2003-06-18 | ||
| PCT/US2003/025984 WO2004016767A2 (en) | 2002-08-19 | 2003-08-19 | Evolving new molecular function |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CA2495881A1 CA2495881A1 (en) | 2004-02-29 |
| CA2495881C true CA2495881C (en) | 2014-07-08 |
Family
ID=31892407
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA2495881A Expired - Fee Related CA2495881C (en) | 2002-08-19 | 2003-08-19 | Evolving new molecular function |
Country Status (6)
| Country | Link |
|---|---|
| US (3) | US7491494B2 (https=) |
| EP (1) | EP1540013B1 (https=) |
| JP (2) | JP4657919B2 (https=) |
| AU (2) | AU2003263937B2 (https=) |
| CA (1) | CA2495881C (https=) |
| WO (1) | WO2004016767A2 (https=) |
Families Citing this family (114)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP1423400B2 (en) | 2001-03-19 | 2013-05-22 | President and Fellows of Harvard College | Evolving new molecular function |
| EP1401850A1 (en) | 2001-06-20 | 2004-03-31 | Nuevolution A/S | Nucleoside derivatives for library preparation |
| DE10147074A1 (de) * | 2001-09-25 | 2003-05-08 | Beru Ag | Verfahren zum Betreiben einer aus mehreren Heizelementen bestehenden mehrstufigen elektrischen Heizung |
| AU2003214031A1 (en) | 2002-03-15 | 2003-09-29 | Nuevolution A/S | An improved method for synthesising templated molecules |
| US10731151B2 (en) | 2002-03-15 | 2020-08-04 | Nuevolution A/S | Method for synthesising templated molecules |
| EP1539980B1 (en) * | 2002-08-01 | 2016-02-17 | Nuevolution A/S | Library of complexes comprising small non-peptide molecules and double-stranded oligonucleotides identifying the molecules |
| WO2004016767A2 (en) * | 2002-08-19 | 2004-02-26 | The President And Fellows Of Harvard College | Evolving new molecular function |
| US8791053B2 (en) | 2002-09-27 | 2014-07-29 | Mpm-Holding Aps | Spatially encoded polymer matrix |
| EP2348124B1 (en) | 2002-10-30 | 2013-12-11 | Nuevolution A/S | Synthesis of a bifunctional complex |
| WO2004056994A2 (en) | 2002-12-19 | 2004-07-08 | Nuevolution A/S | Quasirandom structure and function guided synthesis methods |
| US20070026397A1 (en) | 2003-02-21 | 2007-02-01 | Nuevolution A/S | Method for producing second-generation library |
| US7915201B2 (en) | 2003-03-20 | 2011-03-29 | Nuevolution A/S | Ligational encoding of small molecules |
| US8017323B2 (en) * | 2003-03-26 | 2011-09-13 | President And Fellows Of Harvard College | Free reactant use in nucleic acid-templated synthesis |
| EP1611546B1 (en) | 2003-04-04 | 2013-01-02 | Icosystem Corporation | Methods and systems for interactive evolutionary computing (iec) |
| EP1649346A2 (en) * | 2003-08-01 | 2006-04-26 | Icosystem Corporation | Methods and systems for applying genetic operators to determine system conditions |
| US7356518B2 (en) * | 2003-08-27 | 2008-04-08 | Icosystem Corporation | Methods and systems for multi-participant interactive evolutionary computing |
| US11118215B2 (en) * | 2003-09-18 | 2021-09-14 | Nuevolution A/S | Method for obtaining structural information concerning an encoded molecule and method for selecting compounds |
| EP1694693A2 (en) | 2003-12-17 | 2006-08-30 | Praecis Pharmaceuticals Inc. | Methods for synthesis of encoded libraries |
| US7972994B2 (en) | 2003-12-17 | 2011-07-05 | Glaxosmithkline Llc | Methods for synthesis of encoded libraries |
| WO2005078122A2 (en) * | 2004-02-17 | 2005-08-25 | Nuevolution A/S | Method for enrichment involving elimination by mismatch hybridisation |
| DE602005017370D1 (de) * | 2004-03-22 | 2009-12-10 | Nuevolution As | Ligationscodierung unter verwendung von oligonukleotidbausteinen |
| US7707220B2 (en) * | 2004-07-06 | 2010-04-27 | Icosystem Corporation | Methods and apparatus for interactive searching techniques |
| EP1782285A1 (en) * | 2004-07-06 | 2007-05-09 | Icosystem Corporation | Methods and apparatus for query refinement using genetic algorithms |
| AU2005300886B2 (en) | 2004-11-08 | 2009-11-12 | Vipergen Aps | Structural nucleic acid guided chemical synthesis |
| ATE420170T1 (de) | 2004-11-22 | 2009-01-15 | Peter Birk Rasmussen | Matrizengerichtete split-and-mix-synthese von bibliotheken kleiner moleküle |
| CN101107357B (zh) * | 2005-01-21 | 2013-01-02 | 哈佛大学校长及研究员协会 | 用于以核酸为模板的合成中的游离反应物 |
| WO2007008276A2 (en) * | 2005-05-03 | 2007-01-18 | Ensemble Discovery Corporation | Turnover probes and use thereof for nucleic acid detection |
| JP2006320271A (ja) * | 2005-05-20 | 2006-11-30 | Tokyo Institute Of Technology | 低分子化合物とタンパク質の結合評価方法 |
| WO2006128138A2 (en) * | 2005-05-26 | 2006-11-30 | Ensemble Discovery Corportion | Biodetection by nucleic acid-templated chemistry |
| WO2006130669A2 (en) * | 2005-05-31 | 2006-12-07 | Ensemble Discovery Corporation | Anchor-assisted fragment selection and directed assembly |
| DE602006012971D1 (de) * | 2005-06-07 | 2010-04-29 | Harvard College | Vermittelter chemie |
| US20090203530A1 (en) * | 2005-06-07 | 2009-08-13 | Liu David R | Polymer evolution via templated synthesis |
| DK1910538T3 (da) * | 2005-06-09 | 2011-08-08 | Praecis Pharm Inc | Fremgangsmåder til syntese af kodede biblioteker |
| US8183178B2 (en) * | 2005-06-17 | 2012-05-22 | President And Fellows Of Harvard College | Iterated branching reaction pathways via nucleic acid-mediated chemistry |
| US20090035824A1 (en) * | 2005-06-17 | 2009-02-05 | Liu David R | Nucleic acid-templated chemistry in organic solvents |
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| GB0514936D0 (en) * | 2005-07-20 | 2005-08-24 | Solexa Ltd | Preparation of templates for nucleic acid sequencing |
| WO2007035848A2 (en) * | 2005-09-21 | 2007-03-29 | Icosystem Corporation | System and method for aiding product design and quantifying acceptance |
| JP2009513135A (ja) | 2005-10-28 | 2009-04-02 | プリーシス・ファーマシューティカルズ・インコーポレイテッド | エンコードされたライブラリーを用いて興味のある化合物を同定する方法 |
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| CN101952719A (zh) * | 2007-07-27 | 2011-01-19 | 通信改革公司 | 检测测定法及其用途 |
| US20110229877A1 (en) | 2008-07-07 | 2011-09-22 | Oxford Nanopore Technologies Limited | Enzyme-pore constructs |
| US8338565B2 (en) * | 2008-08-20 | 2012-12-25 | Ensemble Therapeutics Corporation | Macrocyclic compounds for inhibition of tumor necrosis factor alpha |
| KR20110125226A (ko) * | 2009-01-30 | 2011-11-18 | 옥스포드 나노포어 테크놀로지즈 리미티드 | 혼성화 링커 |
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| GB0921665D0 (en) | 2009-12-10 | 2010-01-27 | Trillion Genomics Ltd | Phobes |
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| CA2495881A1 (en) | 2004-02-29 |
| EP1540013A4 (en) | 2006-06-28 |
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