AU2016350734B2 - Sample preparation for difficult sample types - Google Patents

Sample preparation for difficult sample types Download PDF

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Publication number
AU2016350734B2
AU2016350734B2 AU2016350734A AU2016350734A AU2016350734B2 AU 2016350734 B2 AU2016350734 B2 AU 2016350734B2 AU 2016350734 A AU2016350734 A AU 2016350734A AU 2016350734 A AU2016350734 A AU 2016350734A AU 2016350734 B2 AU2016350734 B2 AU 2016350734B2
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AU
Australia
Prior art keywords
sample
collection method
buffer
pouch
vial
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Application number
AU2016350734A
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English (en)
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AU2016350734A1 (en
Inventor
Cheryl Lynn Baird
Robert John Crisp
Jeremy Paul Green
Andrew Clinton Hemmert
Erik Wong Huynh
Jesse Linton MONTGOMERY
Elizabeth Mary Ott Crowther
Kendall A. Rasband
Stephanie Anne Thatcher
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Biofire Diagnostics LLC
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Biofire Diagnostics LLC
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Publication date
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Publication of AU2016350734A1 publication Critical patent/AU2016350734A1/en
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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • C12N15/1006—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00—Sampling; Preparing specimens for investigation
    • G01N1/02—Devices for withdrawing samples
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00—Sampling; Preparing specimens for investigation
    • G01N1/28—Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
    • G01N1/40—Concentrating samples
    • G01N1/4077—Concentrating samples by other techniques involving separation of suspended solids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2521/00—Reaction characterised by the enzymatic activity
    • C12Q2521/50—Other enzymatic activities
    • C12Q2521/537—Protease
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2527/00—Reactions demanding special reaction conditions
    • C12Q2527/153—Viscosity
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00—Sampling; Preparing specimens for investigation
    • G01N1/02—Devices for withdrawing samples
    • G01N2001/028—Sampling from a surface, swabbing, vaporising
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00—Sampling; Preparing specimens for investigation
    • G01N1/28—Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
    • G01N1/40—Concentrating samples
    • G01N1/4077—Concentrating samples by other techniques involving separation of suspended solids
    • G01N2001/4088—Concentrating samples by other techniques involving separation of suspended solids filtration

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biomedical Technology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Sampling And Sample Adjustment (AREA)
AU2016350734A 2015-11-02 2016-11-01 Sample preparation for difficult sample types Active AU2016350734B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201562249592P 2015-11-02 2015-11-02
US62/249,592 2015-11-02
PCT/US2016/059928 WO2017079167A1 (en) 2015-11-02 2016-11-01 Sample preparation for difficult sample types

Publications (2)

Publication Number Publication Date
AU2016350734A1 AU2016350734A1 (en) 2018-06-14
AU2016350734B2 true AU2016350734B2 (en) 2021-04-08

Family

ID=58635347

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2016350734A Active AU2016350734B2 (en) 2015-11-02 2016-11-01 Sample preparation for difficult sample types

Country Status (12)

Country Link
US (2) US11175205B2 (enExample)
EP (2) EP3789503B1 (enExample)
JP (3) JP7126445B2 (enExample)
KR (2) KR102830890B1 (enExample)
CN (2) CN108473931B (enExample)
AU (1) AU2016350734B2 (enExample)
BR (1) BR112018008331B1 (enExample)
CA (1) CA3003172A1 (enExample)
CL (1) CL2018001156A1 (enExample)
ES (1) ES2862224T3 (enExample)
SG (1) SG11201802946WA (enExample)
WO (1) WO2017079167A1 (enExample)

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US20160296945A1 (en) 2013-03-15 2016-10-13 Ancera, Inc. Systems and methods for active particle separation
US20160299132A1 (en) 2013-03-15 2016-10-13 Ancera, Inc. Systems and methods for bead-based assays in ferrofluids
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WO2016210348A2 (en) 2015-06-26 2016-12-29 Ancera, Inc. Background defocusing and clearing in ferrofluid-based capture assays
US9933445B1 (en) 2016-05-16 2018-04-03 Hound Labs, Inc. System and method for target substance identification
WO2018026605A1 (en) * 2016-07-31 2018-02-08 Ancera Corp. Multilayer disposable cartridge for ferrofluid-based assays and method of use
US11982611B2 (en) * 2017-03-20 2024-05-14 Nanocellect Biomedical, Inc. Systems, apparatuses, and methods for cell sorting and flow cytometry
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US20200245898A1 (en) 2019-01-31 2020-08-06 Hound Labs, Inc. Single-use Microfluidic Cartridge for Detection of Target Chemical Presence in Human Breath
US11977086B2 (en) 2019-03-21 2024-05-07 Hound Labs, Inc. Biomarker detection from breath samples
CN110157702A (zh) * 2019-05-24 2019-08-23 中国水产科学研究院南海水产研究所深圳试验基地 一种用于提取珊瑚rna样品的采集操作台
US20230194389A1 (en) * 2020-05-07 2023-06-22 Abbott Rapid Diagnostics International Unlimited Company Sample collection and disposal swab
US11933731B1 (en) 2020-05-13 2024-03-19 Hound Labs, Inc. Systems and methods using Surface-Enhanced Raman Spectroscopy for detecting tetrahydrocannabinol
US20230203586A1 (en) * 2020-05-29 2023-06-29 The Rockefeller University Method and system for rna isolation from self-collected and small volume samples
US20230234056A1 (en) * 2020-06-18 2023-07-27 Nanocellect Biomedical, Inc. Microfluidic systems and methods for sorting particles
BR112023000642A2 (pt) * 2020-07-13 2023-04-25 Harvard College Zaragatoa de narinas anteriores e usos da mesma
CN111822282B (zh) * 2020-07-24 2021-07-20 惠州法路源基因科技有限公司 一种取样拭子植绒设备
US12392769B1 (en) 2021-01-12 2025-08-19 Hound Labs, Inc. Ambient contamination in breath analyte detection and measurement
CN113136412A (zh) * 2021-04-22 2021-07-20 浙江珂瑞康生物医疗科技有限公司 用于含可溶性蛋白生物医用材料的生物负载测定处理液
EP4469204A1 (en) * 2022-01-25 2024-12-04 S.D. Sight Diagnostics Ltd. Sample carrier for use with a bodily sample

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WO2003070898A2 (en) * 2002-02-19 2003-08-28 Choicepoint Asset Company Selective extraction of dna from groups of cells
US20040157219A1 (en) * 2003-02-06 2004-08-12 Jianrong Lou Chemical treatment of biological samples for nucleic acid extraction and kits therefor
US20110217694A1 (en) * 2008-08-15 2011-09-08 Buzatu Dan A Flow cytometry-based systems and methods for detecting microbes
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WO2003070898A2 (en) * 2002-02-19 2003-08-28 Choicepoint Asset Company Selective extraction of dna from groups of cells
US20040157219A1 (en) * 2003-02-06 2004-08-12 Jianrong Lou Chemical treatment of biological samples for nucleic acid extraction and kits therefor
US20140212882A1 (en) * 2003-07-31 2014-07-31 Handylab, Inc. Processing particle-containing samples
US20110217694A1 (en) * 2008-08-15 2011-09-08 Buzatu Dan A Flow cytometry-based systems and methods for detecting microbes
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Also Published As

Publication number Publication date
EP3789503A1 (en) 2021-03-10
EP3789503C0 (en) 2024-04-10
EP3353278B1 (en) 2021-03-10
CL2018001156A1 (es) 2018-11-23
ES2862224T3 (es) 2021-10-07
US20170122851A1 (en) 2017-05-04
JP7126445B2 (ja) 2022-08-26
CN108473931B (zh) 2022-07-19
KR102830890B1 (ko) 2025-07-07
KR20180080241A (ko) 2018-07-11
SG11201802946WA (en) 2018-05-30
JP2023085281A (ja) 2023-06-20
WO2017079167A1 (en) 2017-05-11
EP3789503B1 (en) 2024-04-10
JP2019502098A (ja) 2019-01-24
KR20250108762A (ko) 2025-07-15
CN108473931A (zh) 2018-08-31
BR112018008331A2 (pt) 2018-10-30
BR112018008331B1 (pt) 2022-09-06
EP3353278A4 (en) 2019-03-06
CA3003172A1 (en) 2017-05-11
CN115181781A (zh) 2022-10-14
EP3353278A1 (en) 2018-08-01
AU2016350734A1 (en) 2018-06-14
US11175205B2 (en) 2021-11-16
US20220034770A1 (en) 2022-02-03
JP2022008815A (ja) 2022-01-14
HK1252952A1 (en) 2019-06-06

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