ATE465274T1 - Verbesserte strategien zur sequenzierung komplexer genome unter verwendung von sequenziertechniken mit hohem durchsatz - Google Patents

Verbesserte strategien zur sequenzierung komplexer genome unter verwendung von sequenziertechniken mit hohem durchsatz

Info

Publication number
ATE465274T1
ATE465274T1 AT06757809T AT06757809T ATE465274T1 AT E465274 T1 ATE465274 T1 AT E465274T1 AT 06757809 T AT06757809 T AT 06757809T AT 06757809 T AT06757809 T AT 06757809T AT E465274 T1 ATE465274 T1 AT E465274T1
Authority
AT
Austria
Prior art keywords
sequence
fragments
primer
sequencing
genome
Prior art date
Application number
AT06757809T
Other languages
English (en)
Inventor
Eijk Michael Josephus Ther Van
Anker Preben Soerensen
Rene Cornelis Josephus Hogers
Original Assignee
Keygene Nv
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Keygene Nv filed Critical Keygene Nv
Application granted granted Critical
Publication of ATE465274T1 publication Critical patent/ATE465274T1/de

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Immunology (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)
  • Heterocyclic Carbon Compounds Containing A Hetero Ring Having Oxygen Or Sulfur (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Medicines Containing Plant Substances (AREA)
AT06757809T 2005-06-23 2006-06-23 Verbesserte strategien zur sequenzierung komplexer genome unter verwendung von sequenziertechniken mit hohem durchsatz ATE465274T1 (de)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US69305305P 2005-06-23 2005-06-23
US71489705P 2005-09-08 2005-09-08
EP06075104 2006-01-16
US75903406P 2006-01-17 2006-01-17
PCT/NL2006/000312 WO2006137734A1 (en) 2005-06-23 2006-06-23 Improved strategies for sequencing complex genomes using high throughput sequencing technologies

Publications (1)

Publication Number Publication Date
ATE465274T1 true ATE465274T1 (de) 2010-05-15

Family

ID=36950154

Family Applications (1)

Application Number Title Priority Date Filing Date
AT06757809T ATE465274T1 (de) 2005-06-23 2006-06-23 Verbesserte strategien zur sequenzierung komplexer genome unter verwendung von sequenziertechniken mit hohem durchsatz

Country Status (11)

Country Link
US (1) US20090142758A1 (de)
EP (1) EP1910563B1 (de)
JP (1) JP2008546405A (de)
CN (1) CN101278058A (de)
AT (1) ATE465274T1 (de)
AU (1) AU2006259990B2 (de)
CA (1) CA2613248A1 (de)
DE (1) DE602006013831D1 (de)
DK (1) DK1910562T3 (de)
ES (2) ES2357549T3 (de)
WO (1) WO2006137734A1 (de)

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ES2387878T3 (es) 2005-06-23 2012-10-03 Keygene N.V. Estrategias para la identificación de alto rendimiento y la detección de polimorfismos
CA2623539C (en) 2005-09-29 2015-12-15 Keygene N.V. High throughput screening of mutagenized populations
US10316364B2 (en) 2005-09-29 2019-06-11 Keygene N.V. Method for identifying the source of an amplicon
DK1966394T3 (da) * 2005-12-22 2012-10-29 Keygene Nv Forbedrede strategier til transkriptprofilering under anvendelse af high throughput-sekventeringsteknologier
JP5452021B2 (ja) * 2005-12-22 2014-03-26 キージーン ナムローゼ フェンノートシャップ ハイスループットａｆｌｐ系多型検出法
US7932029B1 (en) * 2006-01-04 2011-04-26 Si Lok Methods for nucleic acid mapping and identification of fine-structural-variations in nucleic acids and utilities
EP2002017B1 (de) 2006-04-04 2015-06-10 Keygene N.V. Nachweis von molekularmarkern mit hohem durchsatz auf der basis von restriktionsfragmenten
ATE481506T1 (de) * 2006-07-12 2010-10-15 Keygene Nv Genomische kartierung mit hohem durchsatz unter verwendung von aflp
EP2121983A2 (de) 2007-02-02 2009-11-25 Illumina Cambridge Limited Verfahren zur kennzeichnung von proben und sequenzierung mehrerer nukleotidmatrizen
CL2008001682A1 (es) 2007-06-08 2008-12-12 Monsanto Technology Llc Metodos para el mejoramiento de plantas mediante el uso de informacion directa de secuencias de acidos nucleicos.
US9080211B2 (en) 2008-10-24 2015-07-14 Epicentre Technologies Corporation Transposon end compositions and methods for modifying nucleic acids
JP2012514977A (ja) 2009-01-13 2012-07-05 キージーン・エン・フェー 新規ゲノム配列決定戦略
EP2248914A1 (de) * 2009-05-05 2010-11-10 Max-Planck-Gesellschaft zur Förderung der Wissenschaften e.V. Die Verwendung von IIB-Restriktionsendonukleasen in Sequenzierungsanwendungen der zweiten Generation
CN101693918B (zh) * 2009-10-13 2012-01-04 东南大学 一种提高核酸内切酶v切割位置特异性的方法
WO2011071382A1 (en) * 2009-12-10 2011-06-16 Keygene N.V. Polymorfphic whole genome profiling
EP2333104A1 (de) 2009-12-11 2011-06-15 Lexogen GmbH RNA-Analyseverfahren
EP2354243A1 (de) 2010-02-03 2011-08-10 Lexogen GmbH Verfahren zur Komplexitätsminderung
ES2667346T3 (es) * 2010-07-09 2018-05-10 Cergentis B.V. Estrategias de secuenciación de región genómica 3-D de interés
WO2013036929A1 (en) 2011-09-09 2013-03-14 The Board Of Trustees Of The Leland Stanford Junior Methods for obtaining a sequence
DK2756098T3 (en) 2011-09-16 2018-09-03 Lexogen Gmbh Process for Preparing a Library of Nucleic Acid Molecules
CN102373288B (zh) * 2011-11-30 2013-12-11 盛司潼 一种对目标区域进行测序的方法及试剂盒
CN103305503B (zh) * 2012-03-16 2016-05-11 江苏基谱生物科技发展有限公司 一种用于高通量测序的索引序列组
WO2014129894A1 (en) * 2013-02-19 2014-08-28 Cergentis B.V. Sequencing strategies for genomic regions of interest
US9328382B2 (en) 2013-03-15 2016-05-03 Complete Genomics, Inc. Multiple tagging of individual long DNA fragments
CN104630202A (zh) * 2013-11-13 2015-05-20 北京大学 一种能够减小微量核酸物质整体扩增时产生偏倚的扩增方法
GB201409282D0 (en) * 2014-05-23 2014-07-09 Univ Sydney Tech Sequencing process
WO2016058121A1 (zh) * 2014-10-13 2016-04-21 深圳华大基因科技有限公司 一种核酸片段化方法和序列组合
CN107590362B (zh) * 2017-08-21 2019-12-06 武汉菲沙基因信息有限公司 一种基于长读序测序判断重叠组装正误的方法
CN110157781B (zh) * 2018-12-29 2020-08-21 广州凯普医药科技有限公司 一种重叠延伸PCR结合Sanger测序检测不连续多DNA位点的方法
CN113366115B (zh) * 2019-01-29 2024-07-05 深圳华大智造科技股份有限公司 高覆盖率stlfr
US20220205017A1 (en) * 2019-05-20 2022-06-30 Arima Genomics, Inc. Methods and compositions for enhanced genome coverage and preservation of spatial proximal contiguity
CN111667883B (zh) * 2020-06-03 2021-01-22 四川大学 一种基于复合微单倍型焦磷酸测序图谱解析的法医学混合dna的分析方法

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JP3236295B2 (ja) * 1991-09-24 2001-12-10 ケイヘーネ・エヌ・ベー 選択的な制限断片増幅：一般的なｄｎａフィンガプリント法
AU6024598A (en) * 1997-01-10 1998-08-03 Pioneer Hi-Bred International, Inc. Hybridization-based genetic amplification and analysis
ES2163271T3 (es) * 1997-05-13 2002-01-16 Azign Bioscience As Procedimiento para clonar arnm y visualizar transcriptores diferencialmente expresados (dodets).
US6653076B1 (en) * 1998-08-31 2003-11-25 The Regents Of The University Of Washington Stable isotope metabolic labeling for analysis of biopolymers
AU2144000A (en) * 1998-10-27 2000-05-15 Affymetrix, Inc. Complexity management and analysis of genomic dna
WO2000040755A2 (en) * 1999-01-06 2000-07-13 Cornell Research Foundation, Inc. Method for accelerating identification of single nucleotide polymorphisms and alignment of clones in genomic sequencing
WO2000061801A2 (en) * 1999-04-09 2000-10-19 Keygene N.V. METHOD FOR THE DETECTION AND/OR ANALYSIS, BY MEANS OF PRIMER EXTENSION TECHNIQUES, OF SINGLE NUCLEOTIDE POLYMORPHISMS IN RESTRICTION FRAGMENTS, IN PARTICULAR IN AMPLIFIED RESTRICTION FRAGMENTS GENERATED USING AFLP$m(3)
US7217516B2 (en) * 2000-05-15 2007-05-15 Keygene N.V. Methods and kits comprising AFLP primers, and ramp primers with a part complementary to a compound microsatellite repeat and an anchor part complementary to nucleotides adjacent to the repeat
CA2444994A1 (en) * 2001-04-20 2002-10-31 Karolinska Innovations Ab Methods for high throughput genome analysis using restriction site tagged microarrays
EP2159285B1 (de) * 2003-01-29 2012-09-26 454 Life Sciences Corporation Verfahren zur Verstärkung und Sequenzierung von Nukleinsäuren

Also Published As

Publication number Publication date
CA2613248A1 (en) 2006-12-28
DE602006013831D1 (de) 2010-06-02
EP1910563A1 (de) 2008-04-16
DK1910562T3 (da) 2011-03-21
JP2008546405A (ja) 2008-12-25
CN101278058A (zh) 2008-10-01
ES2357549T3 (es) 2011-04-27
AU2006259990B2 (en) 2011-01-27
AU2006259990A1 (en) 2006-12-28
WO2006137734A1 (en) 2006-12-28
US20090142758A1 (en) 2009-06-04
ES2344802T3 (es) 2010-09-07
EP1910563B1 (de) 2010-04-21

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