WO2022152185A1 - 靶向cd5的全人源抗体 - Google Patents
靶向cd5的全人源抗体 Download PDFInfo
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- WO2022152185A1 WO2022152185A1 PCT/CN2022/071674 CN2022071674W WO2022152185A1 WO 2022152185 A1 WO2022152185 A1 WO 2022152185A1 CN 2022071674 W CN2022071674 W CN 2022071674W WO 2022152185 A1 WO2022152185 A1 WO 2022152185A1
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- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
- C07K2317/92—Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/01—Fusion polypeptide containing a localisation/targetting motif
- C07K2319/03—Fusion polypeptide containing a localisation/targetting motif containing a transmembrane segment
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2510/00—Genetically modified cells
Definitions
- the present invention relates to a fully human antibody or an antigen-binding fragment thereof that specifically binds to human CD5 antigen protein and the native CD5 antigen on the cell membrane surface.
- CAR chimeric antigen receptor
- CD5 is a type I transmembrane glycosylated protein that plays an important role in the negative regulation of T-cell receptor signaling and promotes the survival of normal and malignant lymphocytes.
- CD5 is not expressed on the surface of hematopoietic stem cells, but is highly expressed on malignant T cells.
- CD5 is one of the characteristic surface markers of malignant T-cell tumors, and 80% of T-cell acute lymphoblastic leukemia (T-ALL) and peripheral T-cell lymphomas express CD5.
- T-ALL T-cell acute lymphoblastic leukemia
- CD5 is also expressed on some malignant B-cell tumors.
- CD5 monoclonal antibody has shown moderate therapeutic effect in patients with cutaneous T-cell lymphoma (CTCL) or chronic lymphocytic leukemia (CLL).
- CTCL cutaneous T-cell lymphoma
- CLL chronic lymphocytic leukemia
- an antibody or antigen-binding fragment thereof targeting CD5 wherein the heavy chain variable region of the antibody comprises HCDR1, HCDR2, and HCDR3 selected from one of the following combinations:
- amino acid sequence of HCDR1 is GFTFSHSA (SEQ ID NO: 1);
- amino acid sequence of HCDR2 is IYARGGYT (SEQ ID NO: 2);
- HCDR3 The amino acid sequence of HCDR3 is ARGYHLEYMVSQDV (SEQ ID NO: 3);
- amino acid sequence of HCDR2 is ISSSGSTI (SEQ ID NO: 5);
- HCDR3 The amino acid sequence of HCDR3 is ARVAQREGDV (SEQ ID NO: 6);
- HCDR2 The amino acid sequence of HCDR2 is ISAYNGDT (SEQ ID NO: 8);
- amino acid sequence of HCDR3 is ARYESMSGQDI (SEQ ID NO: 9);
- HCDR1 The amino acid sequence of HCDR1 is GYSFSNHW (SEQ ID NO: 10);
- amino acid sequence of HCDR2 is VYPGDSDT (SEQ ID NO: 11);
- HCDR3 The amino acid sequence of HCDR3 is ARGGTIDGDYGGRQDF (SEQ ID NO: 12); or
- the antibody includes a variant of the combination of CDR sequences in any one of (1)-(4), wherein the variant has at least 90% of the CDR sequences in any one of (1)-(49). Sequence identity, or a total of at least 1 and no more than 10, or no more than 5, 4, 3, 2, or 1 amino acid change in the CDR sequence.
- amino acid sequence of the heavy chain variable region is selected from any of the following:
- amino acid sequence of the heavy chain variable region and/or light chain variable region is selected from any of the following:
- the antibody is a fully human antibody.
- the antibody is a single domain antibody.
- the antibody has a KD value for binding to the CD5 antigen, as determined by biofilm interferometry, below 10-7 M, preferably below 10-8 M.
- the present application also provides fusion proteins comprising one or two antigen-binding functional moieties, wherein each of the antigen-binding functional moieties comprises the above-mentioned antibody or antigen-binding fragment thereof.
- the fusion protein further includes an Fc fragment.
- the two antigen-binding functional moieties each bind the same or different antigenic epitopes.
- the fusion protein comprises a first antigen-binding functional portion and a second antigen-binding functional portion linked in tandem; wherein the first antigen-binding functional portion comprises a first heavy chain variable region (HCVR), wherein The first heavy chain variable region includes HCDR1 shown in SEQ ID NO: 7, HCDR2 shown in SEQ ID NO: 8 and HCDR3 shown in SEQ ID NO: 9; wherein the second antigen-binding functional part includes the first Double chain variable region (HCVR), the second heavy chain variable region includes HCDR1 shown in SEQ ID NO:1, HCDR2 shown in SEQ ID NO:2 and HCDR3 shown in SEQ ID NO:3.
- HCVR first heavy chain variable region
- the first heavy chain variable region includes HCDR1 shown in SEQ ID NO: 7, HCDR2 shown in SEQ ID NO: 8 and HCDR3 shown in SEQ ID NO: 9
- the second antigen-binding functional part includes the first Double chain variable region (HCVR)
- the second heavy chain variable region includes
- the first antigen-binding functional moiety is N-terminal to the second antigen-binding functional moiety.
- the fusion protein comprises the heavy chain variable region sequence set forth in SEQ ID NO: 19 and the heavy chain variable region sequence set forth in SEQ ID NO: 17 linked in tandem.
- the heavy chain variable region sequence set forth in SEQ ID NO:19 is N-terminal to the heavy chain variable region sequence set forth in SEQ ID NO:17.
- the antigen-binding functional moiety is directly linked through a linker molecule; preferably, the linker molecule comprises the amino acid sequence shown in SEQ ID NO:21.
- the fusion protein has an EC50 value of 1-5 nM for binding between the fusion protein and CD5 positive cells as determined by flow cytometry.
- the present application also includes isolated nucleic acid molecules encoding the above-described antibodies or antigen-binding fragments or fusion proteins thereof.
- the nucleic acid molecule comprises the nucleotide sequence shown in any one of SEQ ID NOs: 13-16.
- the present application also includes an expression vector comprising the nucleic acid molecule described herein.
- the vectors are plasmid, retroviral and lentiviral vectors.
- the present application also includes a host cell comprising the expression vector described in the present application.
- the present application also includes a pharmaceutical composition
- a pharmaceutical composition comprising the antibody or antigen-binding fragment or fusion protein thereof described in the present application, and a pharmaceutically acceptable carrier or diluent.
- the application also includes a method of treating a disease or disorder by administering to a patient in need thereof a therapeutically effective amount of an antibody or antigen-binding fragment thereof, fusion protein, or host cell described herein, or A pharmaceutical composition to eliminate, inhibit or reduce CD5 activity, thereby preventing, alleviating, ameliorating or inhibiting a disease or disorder.
- the present application also includes the use of the above-mentioned antibodies or antigen-binding fragments thereof, fusion proteins or the above-mentioned host cells in the preparation of a medicament for eliminating, inhibiting or reducing CD5 activity, thereby preventing, alleviating, improving or inhibiting a disease or condition.
- the present application also includes the use of the above-described antibodies or antigen-binding fragments thereof, fusion proteins, or the above-described host cells as medicaments or in therapy, eg, to eliminate, inhibit or reduce CD5 activity, thereby preventing, alleviating, ameliorating or inhibiting a disease or disorder .
- the disease or disorder is selected from: cancer or autoimmune disease.
- the cancer is selected from: a malignant T cell tumor or a malignant B cell tumor T cell malignancy.
- the malignant T-cell tumor is selected from T-cell acute lymphoblastic leukemia (T-ALL), T-cell lymphoma (eg, peripheral T-cell lymphoma or cutaneous T-cell lymphoma (CTCL)), wherein Said malignant B cell tumor is selected from chronic lymphocytic leukemia (B-CLL) or mantle cell lymphoma (B-MCL).
- T-ALL T-cell acute lymphoblastic leukemia
- T-cell lymphoma eg, peripheral T-cell lymphoma or cutaneous T-cell lymphoma (CTCL)
- Said malignant B cell tumor is selected from chronic lymphocytic leukemia (B-CLL) or mantle cell lymphoma (B-MCL).
- the present application also includes a kit for detecting CD5 protein in a sample.
- the kit includes the antibody or antigen-binding fragment or fusion protein thereof described herein.
- the detection can be in vitro or in vivo.
- the present application also includes antibodies or fragments that compete for the same epitope with the antibodies or antigen-binding fragments thereof described herein.
- the application also includes a multispecific antibody molecule, which at least includes a first functional part and a second functional part, wherein the first functional part includes the antibody or its antigen-binding fragment described in the application; the second functional part has a different binding specificity than said first functional moiety.
- the second functional moiety has binding specificity for immune cells.
- the second functional moiety has binding specificity for T cells.
- the second functional moiety has binding specificity for CD7.
- the application also includes immunoconjugates comprising the antibody or antigen-binding fragment thereof of any one of claims 1-6 linked to a therapeutic agent.
- the therapeutic agent is a drug.
- the therapeutic agent is a cytotoxin.
- the therapeutic agent is a radioisotope.
- the present application also includes the use of the above-mentioned antibody or antigen-binding fragment thereof, the above-mentioned fusion protein, the above-mentioned multispecific antibody molecule or the above-mentioned immunoconjugate in the preparation of a medicament for eliminating, inhibiting or reducing CD5 activity.
- the medicament is for preventing, alleviating, ameliorating or inhibiting cancer or autoimmune disease.
- the cancer is selected from: a malignant T cell tumor or a malignant B cell tumor.
- the present application also includes the use of the above-mentioned antibodies or antigen-binding fragments thereof, the above-mentioned fusion proteins, the above-mentioned multispecific antibody molecules or the above-mentioned immunoconjugates for the preparation of vaccines, preferably antibody vaccines, more preferably Anti-idiotypic antibody vaccine.
- the present application also includes a vaccine preparation comprising the above-mentioned antibody or antigen-binding fragment thereof, the above-mentioned fusion protein, the above-mentioned multispecific antibody molecule or the above-mentioned immunoconjugate.
- Figure 1 shows the general flow of the present invention for screening specific antibodies targeting CD5 from a phage antibody library.
- Figure 2 shows the results of an enzyme-linked immunosorbent assay (ELISA) of some of the panned phage monoclones with target and control antigens.
- ELISA enzyme-linked immunosorbent assay
- Figure 3 shows the results of flow cytometric analysis of the binding of some phage monoclones to Raji and Jurkat cells.
- Figures 4A-F show the results of flow cytometry analysis (peak graphs and MFI values) of the binding of screened phage monoclones #1-64 to various different CD5 positive and negative cell lines.
- Negative Control is a negative control phage antibody clone.
- Figures 5A-F show the results of ELISA analysis of screened phage monoclones #1-64 with CD5 antigen proteins and non-related antigens from various companies.
- Negative control is a negative control phage antibody clone
- anti-M13 phage mouse Ab/anti-mouse HRP Ab is a negative antibody control with only primary antibody and secondary antibody added
- anti-mouse HRP Ab is a negative antibody with only secondary antibody added Control
- Mouse anti-human CD5 Ab/anti-mouse HRP Ab is the positive antibody control for the target antigen (CD5-Fc-Bio)
- anti-human IgG-HRP Ab/anti-his-HRP Ab is the positive antibody control for detecting the antigen label .
- the bar graphs corresponding to each test antibody and the control group from left to right indicate in order from left to right the correlation with the proteins Kactus-CD5-Fc-Bio, SB-CD5-his-Bio, Acro-CD5-his, Test results for Kactus-BAFFR-his-Bio, Kactus-CD19-FC-Bio, SA.
- Figure 6 shows the results of a binding study of the RD125 61-42-rFc single domain antibody rabbit Fc fusion protein to CD5 positive cells.
- Antibody refers to an immunoglobulin secreted by plasma cells (effector B cells) and used by the body's immune system to neutralize foreign substances (polypeptides, viruses, bacteria, etc.).
- the foreign substance is correspondingly called an antigen.
- the basic structure of a classical antibody molecule is a 4-mer consisting of 2 identical heavy chains and 2 identical light chains. According to the conservative differences in amino acid sequences, the heavy and light chains are divided into a variable region (V) at the amino terminus and a constant region (C) at the carboxy terminus. The variable regions of one heavy and one light chain interact to form the antigen binding site (Fv).
- variable region the composition and arrangement of amino acid residues in certain regions are more variable than other regions (framework regions, FR) in the variable region, called hypervariable regions (HVR), which are actually antibodies. key site for antigen binding. Since these hypervariable regions are complementary to antigenic determinants, they are also called complementarity-determining regions (CDRs). Both heavy and light chains have three complementarity determining regions, designated HCDR1, HCDR2, HCDR3 and LCDR1, LCDR2, LCDR3, respectively.
- CDRs complementarity-determining regions
- Single chain antibody Single chain fragment variable, scFv
- scFv single chain fragment variable
- Single-domain antibody refers to an antibody composed only of amino acids in the variable region of a heavy chain antibody, and its molecular weight is only 12-15kDa, but it has similar or higher specificity and affinity to traditional antibodies.
- single-domain antibodies have attracted much attention due to their stable physicochemical properties, high affinity, easy recombinant expression and preparation, and easy combination with other target or epitope antibodies.
- a "murine antibody” is an antibody produced by a mouse against a specific antigen, usually referring to an antibody produced by mouse B lymphocytes. In most cases, the murine antibody is a monoclonal antibody produced by hybridoma cells.
- the fully human antibody of the present application is obtained by screening a human-derived phage antibody library, which reduces the immunogenicity compared with the mouse-derived antibody, and is more beneficial to the therapeutic use of the human body.
- antibody or antigen-binding fragment thereof in this application generally refers to any form of antigen-binding molecule that can bind to a target antigen.
- the antigen-binding molecule can be a protein or polypeptide, including, for example, antibodies and antigen-binding fragments thereof, single Chain scFv antibodies, single domain antibodies, various fusions and conjugates based on scFv constructions such as scFv-Fc antibodies, immunoconjugates, antibody drug conjugates (ADC), multi/bispecific antibodies, chimeric antigen receptor (CAR).
- CD5 is a type I transmembrane glycosylated protein that plays an important role in the negative regulation of T-cell receptor signaling and promotes the survival of normal and malignant lymphocytes.
- CD5 is one of the characteristic surface markers of malignant T-cell tumors, and 80% of T-cell acute lymphoblastic leukemia (T-ALL) and peripheral T-cell lymphomas express CD5. This forms the basis for the clinical treatment of relevant tumors with antibodies targeting CD5.
- T-ALL T-cell acute lymphoblastic leukemia
- peripheral T-cell lymphomas express CD5. This forms the basis for the clinical treatment of relevant tumors with antibodies targeting CD5.
- sequence identity when referring to amino acid or nucleotide sequences refers to the identity between two amino acid or nucleotide sequences (eg, a query sequence and a reference sequence) The amount of degree, usually expressed as a percentage. Typically, prior to calculating the percent identity between two amino acid or nucleotide sequences, the sequences are aligned and gaps (if any) are introduced. If at a certain alignment position, the amino acid residues or bases in the two sequences are the same, the two sequences are considered to be identical or matched at that position; if the amino acid residues or bases in the two sequences are different, they are considered to be inconsistent at that position or mismatch.
- the number of matched positions is divided by the total number of positions in the alignment window to obtain sequence identity.
- the number of gaps and/or the gap length are also taken into account.
- the published alignment software BLAST available at ncbi.nlm.nih.gov
- BLAST can be employed to obtain optimal sequence alignments and calculate two amino acids or nucleotides by using default settings Sequence identity between sequences.
- "at least 90% sequence identity" as referred to herein includes, but is not limited to: at least 95%, at least 98%, at least 99%, or even 100% sequence identity.
- a small number of amino acids can be replaced, deleted, added and verified or screened for the binding ability or biological activity of the resulting product with the corresponding antigen CD5, thereby obtaining the Corresponding variants of the provided antibodies targeting CD5 are also intended to be included within the scope of the present invention.
- a fully human antibody or antigen-binding fragment thereof of the present application may have at least 1 and no more than 10, or no more than 5, 4, 3, 2, or 1 amino acid changes in the full-length or CDR sequence.
- an antibody light chain library (such as a human phage light chain library) can be screened by using CD5 as an antigen, so as to obtain the same
- the heavy chain variable region matches and maintains the CD5 binding capacity of the light chain variable region.
- Anti-CD5 antibody molecules obtainable in this manner are also included within the scope of the present invention.
- the antigen-binding molecules of the present application may further comprise post-translational modifications.
- post-translational protein modifications include: phosphorylation, acetylation, methylation, ADP-ribosylation, ubiquitination, glycosylation, carbonylation, ubiquitination, biotinylation, or addition of polypeptide side chains or hydrophobic groups group.
- modified soluble polypeptides may contain non-amino acid components, such as lipids, polysaccharides or monosaccharides, and phosphates.
- a preferred form of glycosylation is the sialylation modification, which binds one or more sialic acid groups to the polypeptide. The sialic acid group improves the solubility and serum half-life of the protein, while also reducing the possible immunoheritability of the protein. See Raju et al. Biochemistry. 2001 31;40(30):8868-76.
- pharmaceutically acceptable carrier is used to refer to substances such as solid or liquid diluents, fillers, antioxidants, stabilizers, etc., which are safe for administration, and which are suitable for humans and/or animals Administration without undue adverse side effects, while being suitable for maintaining the viability of the drug or active agent located therein.
- a “therapeutically effective amount” refers to an amount of an active compound sufficient to elicit the biological or medical response desired by a clinician in a subject.
- the “therapeutically effective amount” of the antibody of the present application can be determined by those skilled in the art according to the administration route, the subject's body weight, age, disease condition and other factors. For example, a typical daily dose may range from 0.01 mg to 100 mg of active ingredient per kg of body weight.
- Modes of administration of the antibodies of the present application include, but are not limited to, injection, eg, by intravenous, intramuscular, intraarterial, subcutaneous, intraperitoneal, and the like.
- epitope refers to a portion of a molecule that is bound by an antigen binding protein (eg, an antibody). Epitopes may comprise non-adjacent portions of the molecule (eg, in a polypeptide that are not adjacent in the main sequence of the polypeptide, but are sufficiently close to each other in the trivalent and tetravalent structure of the polypeptide to be bound by the antigen binding protein amino acid residues).
- an antigen binding protein eg, an antibody
- Fusion protein refers to a protein molecule composed of at least two different peptide segments that is artificially produced (eg, by genetic engineering techniques). These peptides do not exist in nature, or do not exist in the same protein molecule.
- Examples of common fusion proteins that include antibody fragments include antibody-cytokine fusion proteins, antibody-cytotoxin fusion proteins (also known as immunotoxins), enzyme-labeled antibodies for immunodetection, chimeric antigen receptors (CARs), etc.
- a fusion protein can include at least two single domain antibodies provided herein that can bind the same or different epitopes.
- the KD value can be used to measure the binding affinity between an antibody and its antigen.
- the KD value is the equilibrium dissociation constant between an antibody and its antigen, ie the ratio of k off /k on . Therefore, the lower the KD value (the lower the concentration), the higher the affinity of the antibody.
- EC 50 concentration for 50% of maximal effect refers to the concentration that causes 50% of the maximal effect.
- concentration of antibody molecules when half of the maximum detection signal such as fluorescence intensity
- kits provided by the present application comprises one or more containers containing a large number of gene constructs encoding the polypeptides of the present application, and pharmaceutically acceptable excipients.
- the kit may also contain instructions for use.
- the kit may also have a notice in the form prescribed by the governmental agency regulating the manufacture, use, or sale of the drug or biological product that it has been licensed by the agency for the manufacture, use, or sale of the drug for human use.
- the present invention uses fully human phage for antibody screening, and directly obtains fully human monoclonal antibodies. Compared with traditional hybridoma technology, the difficult step of humanization of murine antibodies is omitted, and fully human antibodies have lower immunogenicity than humanized murine antibodies.
- Antibodies, ADC, etc.), cell therapy drugs (including CAR-T, CAR-NK, etc.), detection reagents and other applications have better potential.
- the present invention uses the method of antigen protein panning, which can efficiently enrich the antibody that binds to recombinant CD5 and the natural structure CD5 on the cell membrane, greatly reduces the difficulty of later antibody screening, and improves the efficiency.
- Example 1 Enrichment of specific antibody clones targeting the CD5 protein from a phage antibody library by affinity panning
- the phage antibody library we constructed includes natural library, semi-synthetic library and single domain library.
- Semi-synthetic phage antibody library used together with the natural library, to solve the problem that the natural library may lack CD5 high-affinity antibody clones.
- the single-domain phage antibody library is an antibody library composed only of amino acids in the variable region of heavy chain antibodies, and its molecular weight is only 12-15kDa, but it has similar or higher specificity and affinity to traditional antibodies.
- single-domain antibodies have attracted much attention due to their stable physicochemical properties, high affinity, easy recombinant expression and preparation, and easy combination with other target or epitope antibodies.
- steps 1) to 6 usually 3 rounds of panning are required, until a significant increase in the recovery rate of phage (number of eluted phage/number of input phage) is observed.
- the enriched phage pool can be used for subsequent monoclonal selection and ELISA/FACS screening.
- Fully human phage antibody library including natural library, semi-synthetic library and single domain library;
- Example 2 Screening from enriched phage pools using enzyme-linked immunosorbent assay (ELISA) and flow cytometry (FACS) specific clone
- ELISA enzyme-linked immunosorbent assay
- FACS flow cytometry
- the phage pool enriched by the affinity panning step contains phage antibodies of various properties: specific clones, non-specific clones, and negative clones.
- specific clones we need to isolate monoclones from them, package them into monoclonal phages, and perform primary screening on a large number of monoclonal clones by enzyme-linked immunoassay (ELISA) and flow cytometry (FACS), and select from them for simultaneous specific binding Monoclonal CD5 protein and CD5 positive cell line Jurkat.
- ELISA enzyme-linked immunoassay
- FACS flow cytometry
- the combination of Streptavidin and Biotin makes the biotinylated target protein (CD5-Fc-Bio) closer to the native antigen conformation in the reaction solution. Clones that bound only CD5-Fc-Bio but not the control antigen CD19-Fc-Bio were identified as specific clones.
- the primary FACS screening was performed using the CD5-positive cell line Jurkat and the CD5-negative cell line Raji, and those that only bound to Jurkat cells but not Raji cells were identified as specific clones. Through ELISA and FACS two primary screenings, we can obtain candidate antibodies that can not only bind to the recombinantly expressed CD5 protein, but also recognize the native CD5 molecule on the cell surface for subsequent further screening.
- step 7 Add 100 ⁇ L of the cultured phage supernatant in step 1) to the wells coated with the target antigen, and bind at room temperature for 2 hours;
- mice anti M13 primary antibody diluted 1:2000, 100 ⁇ L/well, and incubate at room temperature for 45min;
- mice anti M13 primary antibody diluted 1:2000, 100 ⁇ L/well, after pipetting and mixing, incubate at room temperature for 45min;
- the monoclonal phages were randomly selected from the enriched phage antibody pool and packaged into phages.
- the binding of monoclonal phages to CD5-Fc-Bio protein and the control protein CD19-Fc-Bio was detected by phage ELISA, and CD5-specific phage antibody clones were found. .
- ELISA results of some clones are shown in Figure 2. It can be seen from the figure that clones H1, H2, H3, H4, H5, H6 and H7 bind strongly to the target antigen CD5 (CD5-Fc-Bio), but do not bind to the control antigen CD19-Fc-Bio, with good specificity .
- Negative phage control is a negative control phage antibody clone, which does not bind to target antigen and control antigen.
- Anti-M13 phage mouse Ab/anti-mouse HRP Ab is a negative antibody control with only primary antibody and secondary antibody added
- anti-mouse HRP Ab is a negative antibody control with only secondary antibody added, which does not bind to the target antigen and control antigen.
- Mouse anti human CD5 Ab/anti-mouse HRP Ab is a positive antibody control for the target antigen (CD5-Fc-Bio), Binds to the target antigen and does not bind to the control antigen.
- the results of FACS preliminary screening of antibody clones corresponding to ELISA are shown in FIG. 3 .
- the H3, H4 and H7 clones bind to Jurkat, but not to Raji cells, and are specific clones; other clones are negative clones (the two cells do not bind).
- Antibodies used for therapy must have very good target specificity and only bind to the target antigen without binding to any unrelated antigen; on the other hand, the amino acid sequence of the same antigen on different cell lines will vary (Isoforms or mutants) or binding ligands are different, and it is also necessary to investigate whether our antibodies can bind to cells positive for various target proteins.
- CCRF-CEM cell line CD5 positive cell line
- NALM6 cell line CD5 negative cell line
- the rest of the reagents are the same as the FACS primary screening.
- Antibodies used in therapy must have very good target specificity.
- clone binds to two CD5-positive cell lines, Jurkat and CCRF-CEM, with strong or weak median fluorescence intensity (MFI), but does not bind to two CD5-negative cell lines, Raji and NALM6, with low MFI and good specificity; Clones #3, #13, #18, #23, #24, #28, #29, #40, #41, #50, #57 and #63 bind weakly or not to the positive cell line Jurkat, and bind to the positive cell line Jurkat.
- MFI median fluorescence intensity
- the positive cell line CCRF-CEM does not bind, so it is a negative clone; clones 52 and 53 only bind to the positive cell line Jurkat, but not CCRF-CEM, indicating that they cannot recognize the CD5 antigens of different conformations or isomers expressed by different cell lines. Does not meet the experimental needs; clone 56 can bind to both positive cell lines, but has a weaker binding to the negative cell line Raji, indicating that its binding may be non-specific binding, which does not meet the experimental needs.
- the antibody used for treatment must have very good target specificity, and only bind to the target antigen without binding to any unrelated antigen; on the other hand, the amino acid sequence of the same antigen produced by different companies will be different (isomers or mutants), it is also necessary to investigate whether our antibodies can bind to various target proteins.
- ELISA enzyme-linked immunoassay
- the rest of the reagents are the same as the ELISA primary screening.
- Antibodies used in therapy must have very good target specificity.
- ELISA enzyme-linked immunosorbent assay
- Negative control is a negative control phage antibody clone, which does not bind to the target antigen and control antigen, and anti-M13 phage mouse Ab/anti-mouse HRP Ab is only the first antibody and the second antibody are added.
- the negative antibody control of anti-mouse HRP Ab is the negative antibody control with only the second antibody added, they do not bind to the target antigen and the control antigen
- Mouse anti human CD5 Ab/anti-mouse HRP Ab is the target antigen (CD5-Fc -Bio) positive antibody control that binds to the target antigen and does not bind to the control antigen.
- Anti-human IgG-HRP Ab/anti-his-HRP Ab is a positive antibody control for the detection of antigen tags. It binds to antigens containing Fc tags or his tags, indicating that the coated antigens have been bound to the ELISA plate.
- Clones #1-64 bind to all three CD5 antigens, but none of the three unrelated antigens, indicating that they can bind to CD5 antigens from different companies with good specificity.
- #42, #60, #61 and #62 were cloned as single domain antibodies, and their CDR sequences were as follows:
- the affinity between CD5 sdAbs and antigens may have an important impact on the killing effect and survival time of CAR-T in patients.
- ForteBio's Octet molecular interaction technology used by the Octet system is a label-free technology that provides high-throughput biomolecular interaction information in real time.
- the instrument emits white light to the sensor surface and collects the reflected light.
- the reflected spectrum of different frequencies is affected by the thickness of the optical film layer of the biosensor. Some frequencies of reflected light form constructive interference (blue), while others are destructive interference (red). These interferences are detected by the spectrometer and form an interference spectrum, which is displayed as the phase-shift intensity (nm) of the interference spectrum.
- the spectrometer will detect the displacement of the interference spectrum in real time, and this displacement directly reflects the thickness of the biofilm on the sensor surface, from which the interaction of biomolecules can be obtained.
- High-quality data for the determination of biomolecular interaction kinetic parameters (Kon, Kdis and KD) provide important information for the R&D process.
- Anti-CD5 IgG (constructed by fusion of the VHH sequence of CD5 with human IgG4 Fc) was diluted to 20 ⁇ g/mL with loading buffer (1 ⁇ PBS, pH 7.4, 0.01% BSA and 0.02% Tween 20), and added in a biological The sensor was loaded at about 0.8 nM.
- Binding kinetics of CD5 antigen (Acro, CD5-H52H5) were monitored at various antigen concentrations (100 to 1.563 nM) after a 60 s equilibration phase. 160s of association and 300s of dissociation were performed at each concentration, respectively.
- Binding constants were analyzed by using a 1:1 binding site model (Biacore X-100 evaluation software).
- Affinity refers to the strength with which a single molecule binds to its ligand, and is usually measured and reported by the equilibrium dissociation constant (KD), which can be used to assess and rank the strength of the interaction between two molecules.
- KD equilibrium dissociation constant
- #61, #61-42 (#61 and #42 connected by linker (GGGGSGGGGSGGGGS) (SEQ ID NO: 21)
- #62 and #60 can all bind to CD5 antigen
- the affinity of #61-42 is slightly higher than that of #42, #61, #62 and #60.
- CD5 tandem single-domain antibody rabbit FC fusion protein 61-42rFc (constructed by fusing the above #61-42 with rFc) has high affinity with 4 strains of CD5 positive cells, Kd are: 2.99 ⁇ 0.35 nM (CCRF-CEM-Luc); 4.02 ⁇ 0.92 nM (SUP-T1-Luc); 0.64 ⁇ 0.07 nM (JVM-2-Luc-CD5); 1.14 ⁇ 0.16 nM (MEC-1-CD5-Luc).
- Kd are: 2.99 ⁇ 0.35 nM (CCRF-CEM-Luc); 4.02 ⁇ 0.92 nM (SUP-T1-Luc); 0.64 ⁇ 0.07 nM (JVM-2-Luc-CD5); 1.14 ⁇ 0.16 nM (MEC-1-CD5-Luc).
- the CD5 tandem single domain antibody rabbit Fc fusion protein 61-42-rFc has stable, good and specific binding ability between the four tested CD5 positive cells, and the EC50 values are all 1-5nM.
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Abstract
Description
分析物 | KD(M) | kon(1/Ms) | kdis(1/s) |
#42IgG | 2.90E-09 | 4.80E+04 | 1.39E-04 |
#61IgG | 3.96E-09 | 7.28E+04 | 2.88E-04 |
#61-42IgG | 1.67E-09 | 1.13E+05 | 1.89E-04 |
#62IgG | 2.74E-08 | 1.25E+04 | 3.09E-04 |
#60IgG | 8.32E-09 | 2.55E+04 | 2.12E-04 |
Claims (39)
- 靶向CD5的抗体或其抗原结合片段,其中所述抗体包括重链可变区(HCVR),所述重链可变区包括HCDR1、HCDR2和HCDR3,所述HCDR1、HCDR2和HCDR3选自如下组合之一:(1)HCDR1的氨基酸序列为GFTFSHSA(SEQ ID NO:1);HCDR2的氨基酸序列为IYARGGYT(SEQ ID NO:2);HCDR3的氨基酸序列为ARGYHLEYMVSQDV(SEQ ID NO:3);(2)HCDR1的氨基酸序列为GFTFSSYE(SEQ ID NO:4);HCDR2的氨基酸序列为ISSSGSTI(SEQ ID NO:5);HCDR3的氨基酸序列为ARVAQREGDV(SEQ ID NO:6);(3)HCDR1的氨基酸序列为GGTFSNYA(SEQ ID NO:7);HCDR2的氨基酸序列为ISAYNGDT(SEQ ID NO:8);HCDR3的氨基酸序列为ARYESMSGQDI(SEQ ID NO:9);(4)HCDR1的氨基酸序列为GYSFSNHW(SEQ ID NO:10);HCDR2的氨基酸序列为VYPGDSDT(SEQ ID NO:11);HCDR3的氨基酸序列为ARGGTIDGDYGGRQDF(SEQ ID NO:12);或所述抗体包括(1)-(4)任一项中的CDR序列组合的变体,其中所述变体(1)-(4)任一项中的CDR序列相比,具有至少90%的序列一致性,或在CDR序列上共包含至少1个且不超过10,或不超过5、4、3、2或1个氨基酸改变。
- 如权利要求1所述的抗体或其抗原结合片段,其中所述重链可变区的氨基酸序列选自如下任一项:(1)SEQ ID NO:17所示序列或与其有至少90%序列一致性的重链可变区序列;(2)SEQ ID NO:18所示序列或与其有至少90%序列一致性的重链可变区序列;(3)SEQ ID NO:19所示序列或与其有至少90%序列一致性的重链可变区序列;(4)SEQ ID NO:20所示序列或与其有至少90%序列一致性的重链可变区序列。
- 如权利要求1或2所述的抗体或其抗原结合片段,其中所述重链可变区的氨基酸序列选自如下任一项:(1)SEQ ID NO:17所示的重链可变区序列;(2)SEQ ID NO:18所示的重链可变区序列;(3)SEQ ID NO:19所示的重链可变区序列;(4)SEQ ID NO:20所示的重链可变区序列。
- 如权利要求1-3任一项所述的抗体或其抗原结合片段,其中所述抗体为单域抗体。
- 如权利要求1-4任一项所述的抗体或其抗原结合片段,其中所述抗体为全人源抗体。
- 如权利要求1-5任一项所述的抗体或其抗原结合片段,其中通过生物膜干涉技术测定的所述抗体对CD5抗原的结合KD值低于10 -7M,优选低于10 -8M。
- 融合蛋白,包括一个或两个抗原结合功能部分,其中每个所述抗原结合功能部分包括权利要求1-6任一项所述的抗体或其抗原结合片段,优选地,所述融合蛋白还包括Fc片段。
- 如权利要求7所述的融合蛋白,其中所述两个抗原结合功能部分分别结合相同或不同的抗原表位。
- 如权利要求7或8所述的融合蛋白,包括串联连接的第一抗原结合功能部分和第二抗原结合功能部分;其中所述第一抗原结合功能部分包括第一重链可变区(HCVR),所述第一重链可变区包括SEQ ID NO:7所示的HCDR1、SEQ ID NO:8所示的HCDR2和SEQ ID NO:9所示的HCDR3;其中所述第二抗原结合功能部分包括第二重链可变区(HCVR),所述第二重链可变区包括SEQ ID NO:1所示的HCDR1、SEQ ID NO:2所示的HCDR2和SEQ ID NO:3所示的HCDR3。
- 如权利要求7-9任一项所述的融合蛋白,包括串联连接的SEQ ID NO:19所示的重链可变区序列和SEQ ID NO:17所示的重链可变区序列。
- 如权利要求7-10任一项所述的融合蛋白,其中所述抗原结合功能部分直接通过接头分子连接;优选地,所述接头分子包括SEQ ID NO:21所示的氨基酸序列。
- 如权利要求7-11任一项所述的融合蛋白,其中通过流式细胞术测定的所述融合蛋白与CD5阳性细胞之间结合的EC 50值在1-5nM。
- 编码权利要求1-6任一项的抗体或其抗原结合片段或权利要求7-12任一项所述的融合蛋白的核酸分子。
- 如权利要求13所述的核酸分子,其包括SEQ ID NO:13-16任一项所示的核苷酸序列。
- 一种表达载体,其包括权利要求13或14所述的核酸分子。
- 一种宿主细胞,其包括权利要求15所述的表达载体。
- 一种药物组合物,其包括1)权利要求1-6任一项的抗体或其抗原结合片段,或者权利要求7-12任一项所述的融合蛋白;以及2)药学上可接受的载体或稀释剂。
- 一种治疗疾病或病症的方法,所述方法包括通过向有需要的患者施用治疗有效量的权利要求1-6任一项所述的抗体或其抗原结合片段,权利要求7-12任一项所述的融合蛋白,权利要求16所述的宿主细胞,或权利要求17所述的药物组合物,以消除、抑制或降低CD5活性,从而预防、减轻、改善或抑制疾病或病症。
- 如权利要求18所述的方法,其中所述疾病或病症选自:癌症。
- 如权利要求19所述的方法,其中所述癌症选自:T细胞恶性肿瘤。
- 与权利要求1-6任一项的抗体或其抗原结合片段竞争相同表位的抗体或片段。
- 一种试剂盒,用于检测样品中CD5蛋白,其中,所述试剂盒包括权利要求1-6任一项所述的抗体或其抗原结合片段,或权利要求7-12任一项所述的融合蛋白。
- 权利要求1-6任一项所述的抗体或其抗原结合片段,权利要求7-12任一项所述的融合蛋白,或权利要求16所述的宿主细胞在制备用于消除、抑制或降低CD5活性,从而预防、减轻、改善或抑制疾病或病症的药物中的用途。
- 如权利要求23所述的用途,其中所述疾病或病症选自:癌症或自身免疫疾病。
- 如权利要求24所述的用途,其中所述癌症选自:恶性T细胞肿瘤或恶性B细胞肿瘤。
- 如权利要求25所述的用途,其中所述恶性T细胞肿瘤选自T细胞急性淋巴细胞白血病(T-ALL)、T细胞淋巴瘤(TCL),所述恶性B细胞肿瘤选自慢性淋巴细胞白血病(B-CLL)或套细胞淋巴瘤(B-MCL)。
- 多特异性抗体分子,至少包括第一功能部分和第二功能部分,其中第一功能部分包括权利要求1-6任一项所述的抗体或其抗原结合片段;第二功能部分具有与所述第一功能部分不同的结合特异性。
- 如权利要求27所述的多特异性抗体分子,其中第二功能部分对免疫细胞具有结合特异性。
- 如权利要求27或28所述的多特异性抗体分子,其中所述第二功能部分对T细胞具有结合特异性。
- 如权利要求27-29任一项所述的多特异性抗体分子,其中所述第二功能部分对CD7具有结合特异性。
- 免疫偶联物,包括与治疗剂连接的权利要求1-6中任一项所述的抗体或其抗原结合片段。
- 如权利要求31所述的免疫偶联物,其中所述治疗剂是药物。
- 如权利要求31或32所述的免疫偶联物,其中所述治疗剂是细胞毒素。
- 如权利要求31-33任一项所述的免疫偶联物,其中所述治疗剂是放射性同位素。
- 权利要求1-6任一项所述的抗体或其抗原结合片段、权利要求7-12任一项所述的融合蛋白、权利要求27-30任一项所述的多特异性抗体分子或权利要求31-34任一项所述的免疫偶联物在制备用于消除、抑制或降低CD5活性的药物中的用途。
- 如权利要求35所述的用途,其中所述药物用于预防、减轻、改善或抑制癌症或自身免疫疾病。
- 如权利要求36所述的用途,其中所述癌症选自:恶性T细胞肿瘤或恶性B细胞肿瘤。
- 如权利要求1-6任一项所述的抗体或其抗原结合片段、权利要求7-12任一项所述的融合蛋白、权利要求27-30任一项所述的多特异性抗体分子或权利要求31-34任一项所述的免疫偶联物的用途,用于制备疫苗,较佳地为抗体疫苗,更佳地为抗独特型抗体疫苗。
- 一种疫苗制品,其包括如权利要求1-6任一项所述的抗体或其抗原结合片段、权利要求7-12任一项所述的融合蛋白、权利要求27-30任一项所述的多特异性抗体分子或权利要求31-34任一项所述的免疫偶联物。
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WO2024012495A1 (zh) * | 2022-07-12 | 2024-01-18 | 上海驯鹿生物技术有限公司 | 表达靶向cd5的嵌合抗原受体(car)的细胞及其应用 |
CN115947840A (zh) * | 2023-01-06 | 2023-04-11 | 南京蓬勃生物科技有限公司 | 抗人FcRn单域抗体及其应用 |
CN115947840B (zh) * | 2023-01-06 | 2023-09-19 | 南京蓬勃生物科技有限公司 | 抗人FcRn单域抗体及其应用 |
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US20240050568A1 (en) | 2024-02-15 |
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