WO2018024033A1 - 环状RNA circ-CCNY及其用途 - Google Patents

环状RNA circ-CCNY及其用途 Download PDF

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WO2018024033A1
WO2018024033A1 PCT/CN2017/087832 CN2017087832W WO2018024033A1 WO 2018024033 A1 WO2018024033 A1 WO 2018024033A1 CN 2017087832 W CN2017087832 W CN 2017087832W WO 2018024033 A1 WO2018024033 A1 WO 2018024033A1
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ccny
circ
liver cancer
gene
seq
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罗景燕
刘波
姚志成
唐毅
李伟琴
赖炳权
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广州永诺生物科技有限公司
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  • the invention belongs to the fields of molecular biology and oncology, and particularly relates to a circular RNA circ-CCNY and its use.
  • Hepatocellular carcinoma is one of the most common malignancies worldwide. About 740,000 patients worldwide are newly diagnosed with hepatocellular carcinoma each year, and about 690,000 patients die of liver cancer. Among them, China accounts for 55% of the new annual cases in the world, and it has become one of the regions with the highest incidence of liver cancer in the world.
  • a circular RNA is a new member of the RNA family that differs from traditional linear RNA. It does not have a 5' end cap and a 3' terminal poly(A) tail, and forms a circular structure of non-coding RNA molecules by covalent bonds. .
  • circRNA has a closed loop structure, mainly produced by atypical variable shear processing, widely existed in various biological cells, has structural stability, is difficult to be degraded by RNase, has high expression abundance, and is well preserved between species. The expression has the characteristics of tissue and time-space specificity. These characteristics make circRNA have broad prospects in the development and application of new disease diagnosis and treatment methods.
  • CCNY is a member of a recently discovered class of cyclin families.
  • the CCNY gene is located on chromosome 10, has a full length of 3968 bp, has 10 exons, 9 introns, and encodes a protein of 341 amino acids. The molecular weight of the protein is about 39KD.
  • Studies have shown that CCNY gene is highly expressed in non-small cell lung cancer tumor tissues and lung cancer cell lines; inhibition of CCNY gene expression by RNA interference can significantly inhibit lung cancer cell proliferation.
  • CCNY gene is closely related to the proliferation of glioma cells, and inhibition of CCNY expression can also significantly inhibit the growth of glioma cells.
  • CCNY1 was also found to bind to another cyclin kinase PFTK1 (CDK14) by yeast two-hybrid, which is closely related to distant metastasis and microvascular metastasis of tumor; in addition, CCNY can significantly promote the activity of transcription factor C-myc.
  • the transcription factor C-myc is up-regulated in many tumors and plays an important regulatory role in various biological processes such as cell cycle changes, cell proliferation and apoptosis, suggesting that CCNY is involved in the occurrence, development and metastasis of various tumors. makes an important impact.
  • Circ-CCNY (CircBase ID: hsa_circ_0000235), whose location on the genome is: chr10:35805450-35819171, the corresponding linear gene is CCNY (NM_145012), the circularization sequence has 315 bases, and the fourth of CCNY gene is included. The seventh exon. There have been no reports on the function of circ-CCNY.
  • RNA of CCNY gene in liver tissue was cyclized, and the expression of circular RNA circ-CCNY was down-regulated in hepatocarcinoma tissues.
  • Over-expression of circ-CCNY inhibited the proliferation of hepatoma cells, suggesting that circ-CCNY may become A new approach to the diagnosis and treatment of liver cancer.
  • the object of the present invention is to provide a diagnosis based on the expression of the circ-CCNY gene and its expression product in liver cancer according to the inventors' research on the expression of the circular RNA circ-CCNY in human liver cancer and its regulation on the biological function of liver cancer cells. The use of treatment.
  • the technical solution adopted by the present invention is: a circular RNA circ-CCNY, and the nucleotide sequence of the gene of the circular RNA circ-CCNY is as shown in SEQ ID NO: 1.
  • the structure of the circular RNA circ-CCNY is an end-to-end circular RNA structure formed by splicing and cleavage of the nucleotide sequence as shown in SEQ ID NO: 1.
  • the mature sequence of the circular RNA circ-CCNY is shown in SEQ ID NO: 2.
  • the invention also provides a pharmaceutical composition comprising the cyclic RNA circ-CCNY described above.
  • the present invention also provides a liver cancer diagnostic kit comprising a primer capable of amplifying the above-described circular RNA circ-CCNY.
  • the amplification primer is a primer pair consisting of the DNA sequence as shown in SEQ ID NO: 3 and SEQ ID NO: 4 or a DNA sequence as shown in SEQ ID NO: 5 and SEQ ID NO: A set of primer pairs.
  • the present invention provides the above-mentioned cyclic RNA circ-CCNY in the preparation of a medicament for treating liver cancer use.
  • the present invention provides the use of the circ-CCNY gene as a target gene for the preparation of a medicament for treating liver cancer, the nucleotide sequence of which is shown in SEQ ID NO: 1.
  • the present invention provides the use of a circ-CCNY gene activator for the preparation of a medicament for treating liver cancer, the nucleotide sequence of which is shown in SEQ ID NO: 1.
  • the present invention firstly confirms the objective existence of the circ-CCNY gene by designing specific circular RNA primers for RT-PCR, generation sequencing, and RNase degradation experiments;
  • the present invention detects the expression of circ-CCNY gene in liver cancer patients, and finds that its expression level is significantly reduced, and thus can be used as a diagnostic marker for liver cancer;
  • the present invention performs in vitro cell functional studies on the circ-CCNY gene by constructing a circ-CCNY gene into a lentiviral vector specific for circular RNA to establish a stable cell line overexpressing the gene.
  • the proliferation rate of the liver cancer cell line overexpressing the circ-CCNY gene was significantly slower than that of the control cell line.
  • the circ-CCNY gene and its expression product can be used in the preparation of a medicament for treating liver cancer.
  • the circ-CCNY gene and its expression products serve as markers for the diagnosis of liver cancer, making the diagnosis of liver cancer more accurate and rapid.
  • Figure 1 is a diagram showing the agarose gel electrophoresis of the circ-CCNY gene expression product in Example 1 of the present invention.
  • Fig. 2 is a bar graph reflecting the influence of RNaseR on circ-CCNY and GAPDH in Example 2 of the present invention.
  • Example 3 is a comparison diagram of the results of circ-CCNY expression in liver cancer tissues detected by QPCR in Example 2 of the present invention.
  • Figure 4 is a graph comparing the results of the constructed stable cell lines 97L-circ-CCNY and LM3-circ-CCNY overexpressing circ-CCNY in Example 3 of the present invention.
  • Figure 5 is a pair of liver cancer cell lines 97L and LM3 overexpressing circ-CCNY in Example 4 of the present invention.
  • the abscissa is the number of days
  • the ordinate is the absorbance at 490 nm detected by the microplate reader.
  • the invention firstly designs a circular RNA of CCNY gene by designing a specific primer capable of amplifying a circular RNA, and determines an accurate circularization site of the circular RNA circ-CCNY by a one-generation sequencing method. Then, the RNaseR degradation experiment was carried out to confirm that the CCNY gene expressed a circular RNA molecule consisting of 315 nucleotides with a closed loop structure.
  • the present invention detects the difference in expression of the circ-CCNY gene in a liver cancer sample by using a quantitative PCR method, and the results show that the expression level of the circ-CCNY gene in the liver cancer tissue is significantly lower than that in the adjacent tissue. Therefore, a kit for detecting changes in expression of the gene can be prepared for diagnosis of liver cancer.
  • the circ-CCNY gene and its expression product can be used in the preparation of a medicament for treating liver cancer.
  • the techniques involved in the present invention are all conventional techniques for molecular cloning, and the enzymes, primers, reagents and reaction conditions involved can be reasonably selected according to the experience of those skilled in the art, and the reagent consumables are involved.
  • Commercially available general products, the detection means and instruments involved therein are also well known and well-understood by those skilled in the art.
  • Example 1 RT-PCR reaction was used to detect the expression of the circ-CCNY gene in liver cancer tissues.
  • Tissue treatment Add about 10 mg of tissue to 1 ml of Trizol, homogenize with a homogenizer; centrifuge for 15 minutes, 12000 g, and take the supernatant.
  • the lysate is divided into three layers: the upper layer is the aqueous phase of the RNA; the middle layer is the DNA, lipids, etc.; the lower layer is the cell residue, protein, polysaccharide, and the like.
  • RNA primers were reverse primers, and a pair of forward primers were designed as controls.
  • a set of gDNA template controls was established by RT-PCR, which confirmed that the circRNAs were derived from post-transcriptional cleavage rather than mutations such as gene fusion.
  • the linear gene GAPDH was also tested as a negative control.
  • the primers used are listed below:
  • PCR GAPDH was used as an internal control.
  • PCR reaction system 2 ⁇ l of 10 ⁇ Buffer was added to each reaction tube, and 2 ⁇ l of dNTP, 1 ⁇ l of forward primer, 1 ⁇ l of reverse primer, 1 ⁇ l of cDNA template, 0.2 ⁇ l of Taq enzyme, and water to 20 ⁇ l were added.
  • PCR reaction conditions were as follows: 94 ° C, 5 min pre-denaturation; 94 ° C, 30 sec denaturation; 55 ° C, 30 sec annealing; 72 ° C, 30 sec extension; 35 cycles, agarose gel electrophoresis detection of PCR amplification products, results
  • the circular RNA primer in Figure 1 is a reverse primer (black triangle symbol), while a pair of forward primers are designed as a control (white triangle symbol), and a set of gDNA template controls is established at RT-PCR to confirm that the circRNA is from Post-transcriptional cleavage, rather than mutations such as gene fusion.
  • the linear gene GAPDH was also tested as a negative control.
  • the circ-CCNY divergent primer of Example 1 was used to amplify the circular RNA circ-cCNY, and the hsaGAPDH convergent primer of Example 1 was used to amplify the internal reference gene.
  • the purpose of Ct is the Ct value of the target gene
  • the Ct housekeeper is the Ct value of the housekeeping gene.
  • ⁇ Ct Ct destination-Ct housekeeper, indicating the relative Ct value of the target gene of each sample relative to the housekeeping gene
  • 2- ⁇ Ct represents the treatment group.
  • the relative expression amount relative to the control group indicates the relative expression multiple of the target gene.
  • the results are shown in Figure 2.
  • RNaseR digestion confirmed that circ-CCNY is not sensitive to RNase.
  • RNaseR is an RNase that can digest linear RNA but has no effect on circular RNA.
  • the total RNA was digested with RNaseR and then subjected to QPCR. The results showed that the addition of RNaseR did not significantly affect the expression of circ-CCNY, but the linear gene.
  • Example 3 Overexpression of circ-CCNY lentivirus and its stable cell line construction
  • Lipofectamine 2000 reagent was gently shaken, and 60 ⁇ l of Lipofectamine 2000 reagent was mixed with 1.5 ml of Opti-MEM in another tube, and incubated at room temperature for 5 minutes.
  • the DNA and Lipofectamine 2000 mixture was transferred to a culture medium of 293T cells, mixed, and cultured at 37 ° C in a 5% CO 2 cell incubator.
  • the medium containing the transfection mixture was aspirated, and 10 ml of a cell culture medium containing 10% serum was added to each flask, and the culture was continued for 48 hours at 37 ° C in a 5% CO 2 incubator.
  • the virus concentrate is in the filter cup.
  • the virus concentrate is removed, stored in a virus tube after packaging, and stored at 4 ° C for one week, or -80 ° C for long-term storage. Take one of them for viral biological titer determination.
  • the cells were centrifuged in a 1.5 ml tube according to the amount of cells, and then the cell pellet was diluted with 100-200 ul of serum-free medium, and the cells were completely immersed in the medium.
  • Example 4 Determination of proliferation ability of liver cancer cells overexpressing circ-CCNY gene
  • MTS reagent was added at different time points (24h, 48h, 72h) at a ratio of 1:10, that is, 100 ⁇ l of the culture solution was added with 10 ⁇ l of the test solution.
  • Fig. 5 The proliferation rate of hepatoma cell lines with up-regulated circ-CCNY expression is slowed down.
  • the cell proliferation curve of hepatoma cell line 97L and LM3 overexpressing circ-CCNY and control cell lines is shown in Fig. 5, where the abscissa is the number of days and the ordinate is The absorbance at 490 nm detected by a microplate reader.

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Abstract

一种环状RNA circ-CCNY及其用途，该circ-CCNY基因的核苷酸序列如SEQ ID NO：1所示；通过检测肝癌病人中circ-CCNY基因表达情况，发现其表达水平明显降低；将过表达circ-CCNY基因的肝癌细胞与对照肝癌细胞相比，发现其增殖速度显著减慢。circ-CCNY基因及其表达产物作为诊断肝癌的标志物，使肝癌诊断更加准确、快速，作为制备治疗肝癌药物的靶基因为治疗肝癌提供了新的治疗靶点和治疗途径。

Description

环状RNA circ-CCNY及其用途 技术领域
本发明属于分子生物学和肿瘤学领域，具体涉及一种环状RNA circ-CCNY及其用途。
背景技术
原发性肝细胞癌(Hepatocellular carcinoma，HCC，以下简称肝癌)是全球范围内最常见的恶性肿瘤之一。全球每年约有74万患者被新诊断为肝细胞癌，同时约有69万患者死于肝癌。其中我国占到了全球每年新发病例的55％，成为全世界肝癌最高发的地区之一。
环状RNA(ciucular RNA，circRNA)是区别于传统线性RNA的RNA家族新成员，不具有5′末端帽子和3′末端poly(A)尾巴、并以共价键形成环形结构的非编码RNA分子。最新研究表明circRNA具有闭合环状结构，主要通过非典型可变剪切加工产生，广泛存在于各种生物细胞中，具有结构稳定，难以被RNA酶降解、表达丰度高、物种间保守性好，表达具有组织及时空特异性等特征，这些特点使得circRNA在新型疾病诊断与治疗方法的开发应用上具有广阔的前景。
CCNY是最近发现的一类细胞周期蛋白家族的成员。CCNY基因定位于10号染色体，全长3968bp，有10个外显子，9个内含子，编码341个氨基酸的蛋白，蛋白分子量约为39KD。研究表明CCNY基因在非小细胞肺癌肿瘤组织和肺癌细胞系中高表达；利用RNA干扰技术抑制CCNY基因的表达可显著抑制肺癌细胞增殖。CCNY基因与脑胶质瘤细胞的增殖密切相关，抑制CCNY表达可同样显著抑制脑胶质细胞瘤细胞的生长。此外，通过酵母双杂交还发现CCNY1可以结合另一种细胞周期蛋白激酶PFTK1(CDK14)，这与肿瘤的远处转移及微血管转移密切相关；此外，CCNY可以明显促进转录因子C-myc的活性。转录因子C-myc在许多肿瘤中活性上调，在细胞周期变化、细胞增殖及凋亡等多种生物学过程中起重要的调节作用，提示CCNY在多种肿瘤的发生、发展、转移中 起重要作用。
Circ-CCNY(CircBase ID：hsa_circ_0000235)，其在基因组上的定位为：chr10：35805450-35819171，相应的线性基因为CCNY(NM_145012)，环化序列有315个碱基，包含CCNY基因的第四至第七个外显子。目前尚未有任何关于circ-CCNY功能的报道。
本发明申请人前期研究发现肝组织中CCNY基因的RNA存在环化现象，且环状RNA circ-CCNY在肝癌组织中表达显著下调，过表达circ-CCNY抑制肝癌细胞增殖，提示circ-CCNY可能成为肝癌诊断和治疗的新途径。
发明内容
本发明的目的在于根据发明人对环状RNA circ-CCNY在人肝癌中的表达及其对肝癌细胞生物学功能的调节作用的研究，提供基于circ-CCNY基因及其表达产物在肝癌的诊断和治疗方面的用途。
为实现上述目的，本发明所采取的技术方案为：一种环状RNA circ-CCNY，所述环状RNA circ-CCNY的基因的核苷酸序列如SEQ ID NO：1所示。所述环状RNA circ-CCNY的结构是由如SEQ ID NO：1所示的核苷酸序列转录后经剪接形成的首尾相连的环状RNA结构。所述环状RNA circ-CCNY的成熟体序列如SEQ ID NO：2所示。
本发明还提供了一种药物组合物，所述药物组合物包含上所述的环状RNA circ-CCNY。
本发明还提供了一种肝癌诊断试剂盒，所述试剂盒包含能够扩增上述所述的环状RNA circ-CCNY的引物。
优选地，所述扩增引物为由如SEQ ID NO：3和SEQ ID NO：4所示的DNA序列组成的引物对或由如SEQ ID NO：5和SEQ ID NO：6所示的DNA序列组成的引物对。
本发明提供了上述所述的环状RNA circ-CCNY在制备治疗肝癌的药物中的 用途。
本发明提供了circ-CCNY基因作为靶基因在制备治疗肝癌的药物中的用途，所述circ-CCNY基因的核苷酸序列如SEQ ID NO：1所示。
本发明提供了circ-CCNY基因激活剂在制备治疗肝癌的药物中的用途，所述circ-CCNY基因的核苷酸序列如SEQ ID NO：1所示。
与现有技术相比，本发明的有益效果在于：
(1)本发明首先通过设计特异的环状RNA引物进行RT-PCR、一代测序、RNA酶降解实验证实circ-CCNY基因的客观存在；
(2)本发明通过检测肝癌病人中circ-CCNY基因表达情况，发现其表达水平明显降低，因此，可作为肝癌的诊断标志；
(3)本发明对circ-CCNY基因进行了体外细胞功能学的研究，通过将circ-CCNY基因构建到环状RNA专用的慢病毒载体上，以建立过表达该基因的稳定细胞株。过表达circ-CCNY基因的肝癌细胞株与对照细胞株相比，其增殖速度显著减慢。circ-CCNY基因及其表达产物可以应用在制备治疗肝癌的药物中。
circ-CCNY基因及其表达产物作为诊断肝癌的标志物，使肝癌诊断更加准确、快速，作为制备治疗肝癌药物的靶基因为治疗肝癌提供了新的治疗靶点和治疗途径。
附图说明
图1为本发明实施例1中circ-CCNY基因表达产物的琼脂糖凝胶电泳图。
图2为反映本发明实施例2中RNaseR对circ-CCNY和GAPDH影响情况的柱状图。
图3为本发明实施例2中QPCR检测肝癌组织中circ-CCNY表达结果对比图。
图4为本发明实施例3中构建好的稳定细胞株97L-circ-CCNY和LM3-circ-CCNY过表达circ-CCNY的结果对比图。
图5为本发明实施例4中过表达circ-CCNY的肝癌细胞株97L和LM3与对 照细胞系的细胞增殖曲线示意图，其中横坐标为天数，纵坐标为酶标仪检测的490nm吸光值。
具体实施方式
本发明首先通过设计能扩增环状RNA的特异性引物，PCR扩增出来CCNY基因的环状RNA，并通过一代测序的方法测定出来了环状RNA circ-CCNY的准确的环化位点，接着进行RNaseR降解实验，确定了CCNY基因表达一种由315个核苷酸组成的、具有闭合环状结构的环状RNA分子。
进一步，本发明通过采用荧光定量PCR的方法检测circ-CCNY基因在肝癌样本中的表达差异，结果显示circ-CCNY基因在肝癌组织中的表达水平明显低于癌旁组织中的表达水平。故可制作检测该基因表达变化的试剂盒以用于诊断肝癌。
接着，我们对circ-CCNY基因进行了体外细胞功能学的研究，通过慢病毒介导的方法构建过表达circ-CCNY基因的稳定细胞株。过表达circ-CCNY基因的肝癌细胞株与对照肝癌细胞株相比，其增殖速度显著降低。因此，circ-CCNY基因及其表达产物可以应用在制备治疗肝癌的药物中。
本发明所涉及的技术均为分子克隆常规技术手段，其中涉及的酶、引物、试剂以及反应条件在未作说明的情况下均可根据本领域技术人员的经验进行合理选择，其中涉及试剂耗材属于市售的普通产品，其中涉及的检测手段以及仪器也均为本领域技术人员所熟知并熟练掌握。
下面通过实施例和试验例对本发明的技术方案做进一步的说明，但不应理解为对本发明的限制。
实施例1：RT-PCR反应检测circ-CCNY基因在肝癌组织中的表达。
具体实验方案如下：
1.RNA提取
1)组织处理：取10mg左右组织加入1mlTrizol，用匀浆机匀浆；离心15分钟，12000g，取上清。
2)向上清中加入200ul氯仿，上下用力颠倒混匀半分钟，静置3分钟。
3)4℃，12000g离心15分钟，此时可见裂解液分三层：上层为水相的RNA；中层为DNA，脂类等；下层为细胞残渣，蛋白，多糖等。
4)取上清到新的EP管内；加入等体积的异丙醇，混匀，静置10分钟后，4℃，12000g离心10分钟。
5)小心去掉上清，注意不要丢失RNA沉淀，加入1ml 75％乙醇，上下颠倒，使沉淀块重悬起。
6)4℃，12000g离心10分钟，小心去掉上清，尽量吸干管壁的液体，注意不要丢失RNA沉淀，若沉淀松动可再次离心。晾干约15分钟，至管壁无液体。
7)加入适量体积(20-30ul)的DEPC水溶解RNA，58℃水浴10分钟。
8)取出2ul定量，测量buffer：10mM TrisCl(pH7.8)，根据定量结果进行逆转录。(1A260＝40μg/ml，A260/A280＝1.8～2.1)。
2.cDNA逆转录
1)实验体系
M-MLV Reverse Transcriptase：
Figure PCTCN2017087832-appb-000001
3.引物：环状RNA引物为反向引物，同时设计一对正向引物做对照，RT-PCR时设立一组gDNA模板对照，证实circRNA来自转录后剪切，而不是基因融合等突变。同时检测线性基因GAPDH作为阴性对照。使用的引物如下所列：
SEQ ID NO：3 circ-CCNY_F divergent ACAACCCAGAGCAGAAGCAGA
SEQ ID NO：4 circ-CCNY_R divergent CTGTATTTCCTTGCTATTTGTCCTG
SEQ ID NO：5 circ-CCNY_F convergent GGCTGAATGTGCCATCGTC
SEQ ID NO：6 circ-CCNY_R convergent GTCCTCCACCGTGATGTCTT
SEQ ID NO：7 hsaGAPDH convergent_F GAGTCAACGGATTTGGTCGT
SEQ ID NO：8 hsaGAPDH convergent_R GACAAGCTTCCCGTTCTCAG
SEQ ID NO：9 hsaGAPDH divergent_F TCCTCACAGTTGCCATGTAGACCC
SEQ ID NO：10 hsaGAPDH divergent_R TGCGGGCTCAATTTATAGAAACCGGG
4.PCR：以GAPDH作为内对照。PCR的反应体系：每个反应管中分别加入2μl 10×Buffer，分别加入2μl dNTP，1μl正向引物，1μl反向引物，1μl cDNA模板，0.2μl Taq酶，加水至20μl。PCR反应条件如下：94℃，5分钟预变性；94℃，30秒变性；55℃，30秒退火；72℃，30秒延伸；35个循环，琼脂糖凝胶电泳检测PCR扩增产物，结果见图1，图1中环状RNA引物为反向引物(黑色三角形符号)，同时设计一对正向引物做对照(白色三角形符号)，RT-PCR时设立一组gDNA模板对照，证实circRNA来自转录后剪切，而不是基因融合等突变。同时检测线性基因GAPDH作为阴性对照。
实施例2：QPCR检测肝癌中circ-CCNY的表达情况
1.RNA提取：同实施例1；
2.cDNA逆转录：同实施例1；
3.QPCR扩增实验
1)实验体系：
Figure PCTCN2017087832-appb-000002
选用实施例1的circ-CCNY divergent引物用于扩增环状RNA circ-cCNY，实施例1的hsaGAPDH convergent引物用于扩增内参基因。
2)反应条件：
第一步：95℃2min
第二步(40个循环)：95℃3秒，60℃30秒
第三步60-95℃溶解曲线
3)上机进行目标基因扩增
4)qPCR相对定量结果
目标基因的相对表达量计算公式为：2-ΔΔCt＝2-【(ΔCt)Test-(ΔCt)Control】。Ct目的为目标基因Ct值，Ct管家为管家基因Ct值。ΔCt＝Ct目的-Ct管家，表示各样本目的基因相对管家基因的相对Ct值，ΔΔCt＝(ΔCt)Test-(ΔCt)Control，表示处理组相对对照组进行归一化，2-ΔΔCt表示处理组相对对照组的相对表达量，表示目标基因相对表达倍数。
Total RNA按3U/ug的比例加入RNaseR进行消化，QPCR检测加与不加RNaseR对circ-CCNY和GAPDH的影响，结果见图2，RNaseR消化证实circ-CCNY对RNA酶不敏感。RNaseR是一个能消化线性RNA，但对环状RNA没有影响的RNA酶，将total RNA用RNaseR消化后再进行QPCR检测，结果显示加与不加RNaseR对circ-CCNY表达没有明显影响，但是线性基因GAPDH经RNaseR消化后表达显著降低。
QPCR检测肝癌和相应癌旁组织中circ-CCNY和GAPDH的表达水平，结果见图3，在80对肝癌临床组织样本中检测circ-CCNY的表达，结果显示circ-CCNY在癌组织中显著下调。N：癌旁组织，T：肝癌组织。
实施例3：过表达circ-CCNY慢病毒及其稳定细胞系构建
1.过表达circ-CCNY慢病毒载体构建：合成circ-CCNY线性全序列，序列经过退火成双链DNA片段，通过多克隆位点插入到LV-Circ载体，重组质粒通过测序进行鉴定，Control阴性对照为未插入序列的LV-Circ空载体。
2.慢病毒包装
(1)转染前24h，用胰酶消化对数生长期的293T细胞，传代到10cm细胞培养皿，37℃、5％CO2培养箱内培养。24h待细胞密度达70％～80％时即可用于转染。细胞状态对于病毒包装至关重要，因此需要保证良好的细胞状态和较少的传代次数。
(2)转染前将细胞培养基更换为无血清培养基。
(3)向一灭菌离心管中加入所制备的各DNA溶液(LV-Circ-CCNY/LV-Circ载体10μg，pGag/Pol载体5μg、pRev载体5μg、pVSV-G载体5μg)，与相应体积的Opti-MEM混合均匀，调整总体积为1.5ml。
(4)将Lipofectamine 2000试剂轻柔摇匀，取60μl Lipofectamine 2000试剂在另一管中与1.5ml Opti-MEM混合，在室温下温育5分钟。
(5)把稀释后的DNA与稀释后的Lipofectamine 2000进行混合，轻轻地颠倒混匀，不要振荡。
(6)混合后，在室温下温育20分钟，以便形成DNA与Lipofectamine 2000稀释液的转染复合物。
(7)将DNA与Lipofectamine 2000混合液转移至293T细胞的培养液中，混匀，于37℃，5％CO2细胞培养箱中培养。
(8)培养6小时后吸去含有转染混和物的培养基，每瓶细胞中加入含10％血清的细胞培养基10ml，于37℃、5％CO2培养箱内继续培养48小时。
3.病毒的收获及浓缩
(1)收集转染后48小时和72小时(转染即可为0小时计起)的293T细胞上清液。
(2)于4℃，4000g离心10min，除去细胞碎片。
(3)以0.45μm滤器过滤上清液于50ml离心管中。
(4)把病毒粗提液样品加入到过滤杯中(最多19ml)，盖上盖子。将过滤杯插到滤过液收集管中。
(5)组合好后，做好平衡，放在转头上。
(6)在5000×g离心，至需要的病毒浓缩体积。通常需要的时间为10-15分钟。
(7)离心结束后，过滤杯中的即为病毒浓缩液。
(8)将病毒浓缩液移出，分装后保存在病毒管中，可在4℃保存一周，或-80℃长期保存。取其中一支进行病毒生物学滴度测定。
4.慢病毒感染细胞：
(1)根据细胞的量将细胞在1.5ml管中离心收集然后用100-200ul的无血清培养液稀释细胞沉淀，以细胞完全浸没在培养基中为准。
(2)吸取过表达的circ-CCNY病毒液加入细胞中，将1.5ml管放在37℃度培养箱中孵育30分钟。另取LV-Circ空载体对照病毒感染做对照细胞系。
(3)将管中混合溶液吸出加到培养皿中或孔里。
(4)加入足够量的新鲜培养液。
(5)12小时后换液。
(6)48小时后加入2ug/ml puromycin进行稳定细胞株筛选。
5.稳定细胞株鉴定：将构建好的稳定细胞株收取部分细胞QPCR检测，结果如图4所示，证实过表达circ-CCNY的细胞株LM3-circ-CCNY、97L-circ-CCNY与对照组细胞株LM3NC、97LNC相比，circ-CCNY的表达量显著增加。
实施例4：过表达circ-CCNY基因的肝癌细胞增殖能力测定
1)将过表达circ-CCNY基因的细胞株及对照组细胞消化成单细胞悬液，计数，调整细胞浓度为1×105个/ml，分到96孔板，每孔100ul，即每孔细胞为1×104个，各9孔。
2)分别在不同的时间点(24h、48h、72h)加入MTS试剂，比例为1∶10，即100μl培养液加入10μl检测液。
3)37℃孵育4h后，酶标仪检测490nm吸光值。
结果见图5，circ-CCNY表达上调的肝癌细胞株增殖速度减慢，过表达circ-CCNY的肝癌细胞株97L和LM3与对照细胞系的细胞增殖曲线示意图，其中横坐标为天数，纵坐标为酶标仪检测的490nm吸光值。
最后所应当说明的是，以上实施例仅用以说明本发明的技术方案而非对本发明保护范围的限制，尽管参照较佳实施例对本发明作了详细说明，本领域的普通技术人员应当理解，可以对本发明的技术方案进行修改或者等同替换，而不脱离本发明技术方案的实质和范围。

Claims (7)

  1. 一种环状RNA circ-CCNY，其特征在于，所述环状RNA circ-CCNY的基因的核苷酸序列如SEQ ID NO：1所示。
  2. 根据权利要求2所述环状RNA circ-CCNY，其特征在于，所述环状RNA circ-CCNY的成熟体序列如SEQ ID NO：2所示。
  3. 一种药物组合物，其特征在于，所述药物组合物包含如权利要求1所述的环状RNA。
  4. 一种肝癌诊断试剂盒，其特征在于，所述试剂盒包含能够扩增如权利要求1所述的环状RNA circ-CCNY的引物。
  5. 根据权利要求3所述的肝癌诊断试剂盒，其特征在于，所述扩增引物为由如SEQ ID NO：3和SEQ ID NO：4所示的DNA序列组成的引物对或由如SEQ ID NO：5和SEQ ID NO：6所示的DNA序列组成的引物对。
  6. 如权利要求1所述的环状RNA circ-CCNY在制备治疗肝癌的药物中的用途。
  7. circ-CCNY基因作为靶基因在制备治疗肝癌的药物中的用途，其特征在于，所述circ-CCNY基因的核苷酸序列如SEQ ID NO：1所示。
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