WO2012079010A2 - Improved method and kit for determining severity and progression of periodontal disease - Google Patents

Improved method and kit for determining severity and progression of periodontal disease Download PDF

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Publication number
WO2012079010A2
WO2012079010A2 PCT/US2011/064216 US2011064216W WO2012079010A2 WO 2012079010 A2 WO2012079010 A2 WO 2012079010A2 US 2011064216 W US2011064216 W US 2011064216W WO 2012079010 A2 WO2012079010 A2 WO 2012079010A2
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WO
WIPO (PCT)
Prior art keywords
periodontal disease
patient
il1b3877
progression
allele
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2011/064216
Other languages
English (en)
French (fr)
Other versions
WO2012079010A3 (en
Inventor
Kenneth S. Kornman
Xiaodong Wu
Hwa-Ying Wang
Steven Offenbacher
James Beck
John Rogus
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Interleukin Genetics Inc
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Interleukin Genetics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority to NZ612799A priority Critical patent/NZ612799A/en
Application filed by Interleukin Genetics Inc filed Critical Interleukin Genetics Inc
Priority to BR112013014479-3A priority patent/BR112013014479B1/pt
Priority to CN201180067082.6A priority patent/CN103547680B/zh
Priority to RU2013131239A priority patent/RU2664431C2/ru
Priority to EP11846577.2A priority patent/EP2649203B1/en
Priority to JP2013543383A priority patent/JP6138692B2/ja
Priority to SG2013044383A priority patent/SG191078A1/en
Priority to AU2011338210A priority patent/AU2011338210B2/en
Publication of WO2012079010A2 publication Critical patent/WO2012079010A2/en
Publication of WO2012079010A3 publication Critical patent/WO2012079010A3/en
Anticipated expiration legal-status Critical
Priority to AU2016202211A priority patent/AU2016202211B2/en
Ceased legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6827Hybridisation assays for detection of mutation or polymorphism
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6858Allele-specific amplification
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/118Prognosis of disease development
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/172Haplotypes
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/18Dental and oral disorders

Definitions

  • Gingivitis is an early stage of the periodontal disease where the gums may become red, swollen and bleed easily. Gingivitis is usually painless and, if not treated, can advance to periodontitis, which may be classified by the magnitude of tissue destruction as mild, moderate, or severe. Periodontitis is primarily a disease of adults and is usually not detectable until after the age of 35. Usually bacteria that are present in dental plaque initiate periodontal disease. Toxins produced by the bacteria in the plaque activate the body's inflammatory and other immune mechanisms which ultimately lead to the destruction of the bone and gum tissue that support the teeth.
  • the invention relates to the discovery of a polymorphism in the IL-1B gene which is associated with susceptibility to periodontal disease. Accordingly, ascertainment of genotype at this polymorphism provides a useful genetic test for susceptibility to periodontal disease.
  • an allele is named by the nucleotide at the polymorphic site.
  • IL-1RN (+2018) allele T refers to a form of the IL-1 RN gene which contains a thymine (T) at position +2018 of the plus strand.
  • an isolated nucleic acid encoding one of the subject IL-1 polypeptides preferably includes no more than 10 kilobases (kb) of nucleic acid sequence which naturally immediately flanks the IL-1 gene in genomic DNA, more preferably no more than 5 kb of such naturally occurring flanking sequences, and most preferably less than 1.5 kb of such naturally occurring flanking sequence.
  • kb kilobases
  • any range of numbers recited in the specification or paragraphs hereinafter describing or claiming various aspects of the invention, such as that representing a particular set of properties, units of measure, conditions, physical states or percentages, is intended to literally incorporate expressly herein by reference or otherwise, any number falling within such range, including any subset of numbers or ranges subsumed within any range so recited.

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Pathology (AREA)
  • Biomedical Technology (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Cell Biology (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
PCT/US2011/064216 2010-12-09 2011-12-09 Improved method and kit for determining severity and progression of periodontal disease Ceased WO2012079010A2 (en)

Priority Applications (9)

Application Number Priority Date Filing Date Title
AU2011338210A AU2011338210B2 (en) 2010-12-09 2011-12-09 Improved method and kit for determining severity and progression of periodontal disease
BR112013014479-3A BR112013014479B1 (pt) 2010-12-09 2011-12-09 métodos para determinar a gravidade e progressão de doença periodontal
CN201180067082.6A CN103547680B (zh) 2010-12-09 2011-12-09 用于确定牙周病的严重性和进展的改进方法和试剂盒
RU2013131239A RU2664431C2 (ru) 2010-12-09 2011-12-09 Улучшенный способ и набор для определения тяжести и прогрессирования периодонтального заболевания
EP11846577.2A EP2649203B1 (en) 2010-12-09 2011-12-09 Improved method for determining severity and progression of periodontal disease
NZ612799A NZ612799A (en) 2010-12-09 2011-12-09 Improved method and kit for determining severity and progression of periodontal disease
SG2013044383A SG191078A1 (en) 2010-12-09 2011-12-09 Improved method and kit for determining severity and progression of periodontal disease
JP2013543383A JP6138692B2 (ja) 2010-12-09 2011-12-09 歯周病の重症度および進行を決定するための改良された方法およびキット
AU2016202211A AU2016202211B2 (en) 2010-12-09 2016-04-08 Improved Method and Kit for Determining Severity and Progression of Periodontal Disease

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US42162810P 2010-12-09 2010-12-09
US61/421,628 2010-12-09
US201161452157P 2011-03-13 2011-03-13
US61/452,157 2011-03-13

Publications (2)

Publication Number Publication Date
WO2012079010A2 true WO2012079010A2 (en) 2012-06-14
WO2012079010A3 WO2012079010A3 (en) 2012-08-23

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PCT/US2011/064216 Ceased WO2012079010A2 (en) 2010-12-09 2011-12-09 Improved method and kit for determining severity and progression of periodontal disease

Country Status (10)

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US (3) US20120208187A1 (enExample)
EP (1) EP2649203B1 (enExample)
JP (2) JP6138692B2 (enExample)
CN (1) CN103547680B (enExample)
AU (2) AU2011338210B2 (enExample)
BR (1) BR112013014479B1 (enExample)
NZ (2) NZ701432A (enExample)
RU (2) RU2018122965A (enExample)
SG (1) SG191078A1 (enExample)
WO (1) WO2012079010A2 (enExample)

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2018130670A1 (en) * 2017-01-12 2018-07-19 Cardioforecast Ltd Methods and kits for treating cardiovascular disease
US10894985B2 (en) 2016-01-12 2021-01-19 Sitokine Limited Methods for predicting response to treatment

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN106918706B (zh) * 2015-12-25 2019-05-21 广州瑞博奥生物科技有限公司 一种检测牙周病相关蛋白的抗体芯片试剂盒
GB201818627D0 (en) * 2018-11-15 2019-01-02 Mars Inc Analytical systems
JP7097855B2 (ja) * 2019-04-24 2022-07-08 ジェネシスヘルスケア株式会社 歯周病のリスクを判定する方法
CA3142662A1 (en) 2019-06-06 2020-12-10 Sitokine Limited Compositions and methods for treating lung, colorectal and breast cancer
WO2021028469A1 (en) 2019-08-12 2021-02-18 Sitokine Limited Compositions and methods for treating cytokine release syndrome and neurotoxicity
WO2021205013A1 (en) 2020-04-09 2021-10-14 Sitokine Limited Compositions and methods for treating covid-19
KR102571131B1 (ko) * 2021-06-01 2023-08-24 부산대학교 산학협력단 치주염 감별용 바이오마커 조성물, 치주염 중증도 감별용 바이오마커 조성물, 및 이를 이용한 진단 키트
EP4430621A1 (en) * 2021-11-12 2024-09-18 Mars, Incorporated Systems and methods for generating health reports based on veterinary oral care health test

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US4666828A (en) 1984-08-15 1987-05-19 The General Hospital Corporation Test for Huntington's disease
US4801531A (en) 1985-04-17 1989-01-31 Biotechnology Research Partners, Ltd. Apo AI/CIII genomic polymorphisms predictive of atherosclerosis
US5110920A (en) 1982-01-22 1992-05-05 Cetus Corporation HLA typing method and DNA probes used therein
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US5272057A (en) 1988-10-14 1993-12-21 Georgetown University Method of detecting a predisposition to cancer by the use of restriction fragment length polymorphism of the gene for human poly (ADP-ribose) polymerase
US5686246A (en) 1995-08-03 1997-11-11 Kornman; Kenneth S. Detecting genetic predisposition to periodontal disease
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US5110920A (en) 1982-01-22 1992-05-05 Cetus Corporation HLA typing method and DNA probes used therein
US4666828A (en) 1984-08-15 1987-05-19 The General Hospital Corporation Test for Huntington's disease
US4801531A (en) 1985-04-17 1989-01-31 Biotechnology Research Partners, Ltd. Apo AI/CIII genomic polymorphisms predictive of atherosclerosis
US5268267A (en) 1987-08-21 1993-12-07 The General Hospital Corporation Method for diagnosing small cell carcinoma
US5272057A (en) 1988-10-14 1993-12-21 Georgetown University Method of detecting a predisposition to cancer by the use of restriction fragment length polymorphism of the gene for human poly (ADP-ribose) polymerase
US5686246A (en) 1995-08-03 1997-11-11 Kornman; Kenneth S. Detecting genetic predisposition to periodontal disease
US20050282198A1 (en) 1997-05-29 2005-12-22 Interleukin Genetics, Inc. Diagnostics and therapeutics for diseases associated with an IL-1 inflammatory haplotype
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US20080118920A1 (en) 2004-05-03 2008-05-22 Duff Gordon W Diagnostics And Therapeutics For Diseases Associated With An Il-1 Inflammatory Haplotype

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See also references of EP2649203A4

Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10894985B2 (en) 2016-01-12 2021-01-19 Sitokine Limited Methods for predicting response to treatment
WO2018130670A1 (en) * 2017-01-12 2018-07-19 Cardioforecast Ltd Methods and kits for treating cardiovascular disease
US10329620B2 (en) 2017-01-12 2019-06-25 Cardioforecast Ltd. Methods and kits for treating cardiovascular disease
US10337070B2 (en) 2017-01-12 2019-07-02 Cardioforecast Ltd. Methods and kits for treating cardiovascular disease
US11486006B2 (en) 2017-01-12 2022-11-01 Sitokine Limited Methods and kits for treating cardiovascular disease

Also Published As

Publication number Publication date
JP6138692B2 (ja) 2017-05-31
JP2017121237A (ja) 2017-07-13
JP6622731B2 (ja) 2019-12-18
EP2649203A2 (en) 2013-10-16
AU2016202211B2 (en) 2017-02-23
EP2649203A4 (en) 2014-05-07
CN103547680A (zh) 2014-01-29
AU2016202211A1 (en) 2016-05-05
AU2011338210A1 (en) 2013-07-25
RU2018122965A3 (enExample) 2019-04-11
BR112013014479A2 (pt) 2016-09-20
JP2013544536A (ja) 2013-12-19
RU2013131239A (ru) 2015-01-20
US20120208187A1 (en) 2012-08-16
RU2018122965A (ru) 2019-03-06
RU2664431C2 (ru) 2018-08-17
CN103547680B (zh) 2017-05-24
NZ701432A (en) 2016-06-24
BR112013014479B1 (pt) 2020-10-27
US20160244841A1 (en) 2016-08-25
SG191078A1 (en) 2013-07-31
EP2649203B1 (en) 2019-07-24
US9347090B2 (en) 2016-05-24
WO2012079010A3 (en) 2012-08-23
AU2011338210B2 (en) 2016-05-12
NZ612799A (en) 2015-04-24
US20130337448A1 (en) 2013-12-19

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