US8648173B2 - Inhibition of tumor metastasis by anti neuropilin 2 antibodies - Google Patents

Inhibition of tumor metastasis by anti neuropilin 2 antibodies Download PDF

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US8648173B2
US8648173B2 US12/598,537 US59853707A US8648173B2 US 8648173 B2 US8648173 B2 US 8648173B2 US 59853707 A US59853707 A US 59853707A US 8648173 B2 US8648173 B2 US 8648173B2
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antibody
nrp2
antigen
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vegf
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Yan Wu
Wei-Ching Liang
Ryan Jefferson Watts
Anil Durgadas Bagri
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Genentech Inc
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    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2863Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against receptors for growth factors, growth regulators
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    • A61P35/00Antineoplastic agents
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
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Definitions

  • the present invention concerns neuropilin-2 (Nrp2) antagonists, especially anti-Nrp2 antibodies, and their use in the prevention and treatment of tumor metastasis.
  • Nrp2 neuropilin-2
  • angiogenesis is implicated in the pathogenesis of a variety of disorders. These include solid tumors and metastasis, atherosclerosis, retrolental fibroplasia, hemangiomas, chronic inflammation, intraocular neovascular diseases such as proliferative retinopathies, e.g., diabetic retinopathy, age-related macular degeneration (AMD), neovascular glaucoma, immune rejection of transplanted corneal tissue and other tissues, rheumatoid arthritis, and psoriasis.
  • proliferative retinopathies e.g., diabetic retinopathy, age-related macular degeneration (AMD), neovascular glaucoma
  • AMD age-related macular degeneration
  • neovascular glaucoma immune rejection of transplanted corneal tissue and other tissues
  • rheumatoid arthritis rheumatoid arthritis
  • psoriasis psorias
  • Garner A. “Vascular diseases”, In: Pathobiology of Ocular Disease. A Dynamic Approach, Garner A., Klintworth G K, eds., 2nd Edition (Marcel Dekker, NY, 1994), pp 1625-1710.
  • angiogenesis appears to be crucial for the transition from hyperplasia to neoplasia, and for providing nourishment for the growth and metastasis of the tumor.
  • the neovascularization allows the tumor cells to acquire a growth advantage and proliferative autonomy compared to the normal cells.
  • a tumor usually begins as a single aberrant cell which can proliferate only to a size of a few cubic millimeters due to the distance from available capillary beds, and it can stay ‘dormant’ without further growth and dissemination for a long period of time.
  • metastases are responsible for the vast majority, estimated at 90%, of deaths from solid tumors (Gupta and Massague, Cell 127, 679-695 (2006)).
  • the complex process of metastasis involves a series of distinct steps including detachment of tumor cells from the primary tumor, intravasation of tumor cells into lymphatic or blood vessels, and extravasation and growth of tumor cells in secondary sites.
  • Analysis of regional lymph nodes in many tumor types suggests that the lymphatic vasculature is an important route for the dissemination of human cancers.
  • the presence of tumor cells in lymph nodes is the most important adverse prognostic factor.
  • lymphangiogenesis can be induced by solid tumors and can promote tumor spread.
  • VEGFC vascular endothelial cell factor
  • VEGFC is known to bind at least two cell surface receptor families, the tyrosine kinase VEGF receptors and the neuropilin (Nrp) receptors.
  • VEGFC can bind VEGFR2 and VEGFR3 leading to receptor dimerization (Shinkai et al., J Biol Chem 273, 31283-31288 (1998)), kinase activation and autophosphorylation (Heldin, Cell 80, 213-223 (1995); Waltenberger et al., J. Biol Chem 269, 26988-26995 (1994)).
  • the phosphorylated receptor induces the activation of multiple substrates leading to angiogenesis and lymphangiogenesis (Ferrara et al., Nat Med 9, 669-676 (2003)).
  • Nrp2 The neuropilin (Nrp) family is comprised of two homologous proteins, neuropilin-1 (Nrp1) and neuropilin-2 (Nrp2).
  • Nrp2 The neuropilin family is comprised of two homologous proteins, neuropilin-1 (Nrp1) and neuropilin-2 (Nrp2).
  • VEGFC In addition to the VEGF receptors, VEGFC also binds to Nrp2, which was initially identified as class 3 semaphorin receptor and mediator of axon guidance (Favier et al., Blood 108, 1243-1250 (2006); Soker et al., J Cell Biochem 85, 357-368 (2002)). Multiple lines of evidence implicate Nrp2 in the development of the vascular and lymphatic systems.
  • Nrp2 mutants show a severe reduction of small lymphatic vessels and capillaries prenatally (Yuan et al., Development 129, 4797-4806 (2002)). Furthermore, the dramatic and embryonic lethal vascular defect seen in homozygous Nrp1 mutant mice is enhanced by loss of Nrp2 function leading to earlier lethality (Takashima et al., Proc Natl Acad Sci USA 99, 3657-3662 (2002)). However, the role of Nrp2 in modulating adult vascular and lymphatic biology, and more specifically metastasis is unknown.
  • Nrps have short intracellular domains that are not known to have any enzymatic or signaling activity. It has been proposed that Nrps function to enhance VEGFR signaling by enhancing ligand-VEGF receptor binding (Favier et al., 2006, supra; Soker et al., 2002, supra). Additionally, sema3F, the semaphorin ligand of Nrp2, has been shown to modulate endothelial cell behavior in vitro and in vivo (Bielenberg et al., J Clin Invest 114, 1260-1271 (2004); Favier et al., Blood 1243-1250, (2006)).
  • Nrps may function independently of VEGF receptors or semaphorin function to modulate endothelial cell (EC) migration (Murga et al., Blood 105, 1992-1999 (2005); Pan et al., Cancer Cell 11, 53-67 (2007); Wang et al., J Biol Chem 278, 48848-48860 (2003)).
  • Anti-VEGF neutralizing antibodies suppress the growth of a variety of human tumor cell lines in nude mice (Kim et al., Nature 362:841-844 (1993); Warren et al., J. Clin. Invest. 95:1789-1797 (1995); Borgstrom et al., Cancer Res. 56:4032-4039 (1996); Melnyk et al., Cancer Res. 56:921-924 (1996)) and also inhibit intraocular angiogenesis in models of ischemic retinal disorders. Adamis et al., Arch. Opthalmol. 114:66-71 (1996). Therefore, anti-VEGF monoclonal antibodies or other inhibitors of VEGF action are promising candidates for the treatment of tumors and various intraocular neovascular disorders.
  • bevacizumab has been approved by the FDA for use in combination with a chemotherapy regimen to treat metastatic colorectal cancer (CRC) and non-samll cell lung cancer (NSCLC). And bevacizumab is being investigated in many ongoing clinical trials for treating various cancer indications.
  • CRC metastatic colorectal cancer
  • NSCLC non-samll cell lung cancer
  • anti-VEGF antibodies and anti-Nrp1 antibodies are also known, and described, for example, in Liang et al., J Mol Biol 366, 815-829 (2007); Pan et al., Cancer Cell 11, 53-67 (2007; and Liang et al., J Biol Chem 281, 951-961 (2006)).
  • the present invention is based, at least in part, on experimental results obtained with a high-affinity function-blocking antibody to Nrp2. Results obtained with this antibody indicate that Nrp2 plays a role in modulating lymphatic endothelial cell (LEC) migration, and that its function extends beyond its previously assigned role as an enhancer of VEGF receptor activation. In addition, the results demonstrate that blocking Nrp2 leads to an inhibition of lymphangiogenesis and a dramatic reduction in lymph node and distal organ metastasis.
  • LEC lymphatic endothelial cell
  • the invention concerns a method for inhibiting lymphatic endothelial cell migration, comprising administering to a mammalian subject in need an effective amount of a neuropilin-2 (Nrp2) antagonist.
  • Nrp2 neuropilin-2
  • the invention concerns a method for inhibiting tumoral lymphangiogenesis, comprising administering to a tumor-bearing mammalian subject an effective amount of a neuropilin-2 (Nrp2) antagonist.
  • Nrp2 neuropilin-2
  • the invention concerns a method for inhibiting tumor metastasis, comprising administering to a tumor-bearing mammalian subject an effective amount of a neuropilin-2 (Nrp2) antagonist.
  • Nrp2 neuropilin-2
  • the mammalian subject preferably is a human patient, such as a human cancer patient, who may have been diagnosed or may be at risk of developing metastasis.
  • the cancer is selected from the group consisting of carcinoma, lymphoma, blastoma, sarcoma, and leukemia.
  • the cancer is selected from the group consisting of squamous cell cancer, small-cell lung cancer, non-small cell lung cancer, adenocarcinoma of the lung, squamous carcinoma of the lung, cancer of the peritoneum, hepatocellular cancer, gastric cancer, gastrointestinal cancer, pancreatic cancer, glioblastoma, cervical cancer, ovarian cancer, liver cancer, bladder cancer, hepatoma, breast cancer, colon cancer, colorectal cancer, endometrial or uterine carcinoma, salivary gland carcinoma, kidney or renal cancer, liver cancer, prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma and various types of head and neck cancer, B-cell lymphoma, chronic lymphocytic leukemia (CLL); acute lymphoblastic leukemia (ALL); Hairy cell leukemia; chronic myeloblastic leukemia; post-transplant lymphoproliferative disorder (PTLD), abnormal vascular proliferation associated with phakomatoses, edema associated with
  • B-cell lymphoma is selected from the group consisting of low grade/follicular non-Hodgkin's lymphoma (NHL); small lymphocytic (SL) NHL; intermediate grade/follicular NHL; intermediate grade diffuse NHL; high grade immunoblastic NHL; high grade lymphoblastic NHL; high grade small non-cleaved cell NHL; bulky disease NHL; mantle cell lymphoma; AIDS-related lymphoma; and Waldenstrom's Macroglobulinemia.
  • NHL low grade/follicular non-Hodgkin's lymphoma
  • SL small lymphocytic
  • the Nrp2 antagonist can be an anti-Nrp2 antibody, including anti-Nrp2B and anti-Nrp2A antibodies, such as, for example, antibodies YW68.4.2, YW68.4.2.36, YW126.20, and fragments and variants, such as affinity matured variants thereof.
  • the invention concerns an anti-Nrp2B antibody comprising the heavy and/or light chain variable region sequence of an antibody selected from the group consisting of YW68.4.2, YW68.4.2.36, and a fragment or variant thereof.
  • the invention concerns an anti-Nrp2A antibody comprising the heavy and/or light chain variable region sequences of YW126.20, or a fragment or variant thereof.
  • the invention further concerns a composition
  • a composition comprising an antibody of the claimed invention in admixture with a pharmaceutically acceptable carrier.
  • the invention concerns a pharmaceutical composition for the prevention or treatment of tumor metastasis comprising an effective amount of an Nrp2 antagonist in admixture with a pharmaceutically acceptable carrier.
  • the invention concerns Nrp2 antagonists for use in the prevention or treatment of tumor metastasis, and the use of Nrp2 antagonists, such as anti-Nrp2 antibodies in in the prevention or treatment of tumor metastasis.
  • FIG. 1 Characterization of Anti-Nrp2 B mAb.
  • A Schematic representation of Sema and VEGF binding regions on Nrp2 relative to Anti-Nrp2 B epitope regions.
  • B ELISA assay demonstrating binding of Anti-Nrp2 B to hNrp2 ECD (filled squares) and B1-B2 domains of hNrp2 (filled circles), but not hNrp1 ECD (open squares) or the A1-A2 domains of hNrp2 (open circles).
  • C Blocking of VEGFC binding to Nrp2 by Anti-Nrp2 B .
  • FIG. 2 Anti-Nrp2 B reduces VEGFC-induced function in vitro and in vivo.
  • A Representative images of stained LECs migrating in response to 200 ng/ml of VEGFC for 18 hours in the presence or absence of Anti-Nrp2 B (50 ⁇ g/ml) or VEGFR3 ECD (50 ⁇ g/ml).
  • C Quantification of LEC migration in response to 10 ng/ml VEGF 165 in the presence or absence of Anti-Nrp2 B (50 ⁇ g/ml) or VEGFR3 ECD (50 ⁇ g/ml).
  • N 6 for each condition.
  • D Quantification of the pixel counts from a corneal micropocket assay described in (E). *p ⁇ 0.05
  • E Representative images of LYVE-1 stained cornea, illustrating the effects of intracorneal placement of 150 ng pellet of VEGFC (P) and systemic treatment with Anti-Nrp2 B (10 mg/kg twice weekly) or VEGFR3 ECD (25 mg/kg twice weekly). LYVE-1 staining has been pseudocolored red to facilitate visualization. *p ⁇ 0.05; Error bars represent standard error of the mean.
  • FIG. 3 Nrp2 B treatment results in a reduction in VEGF receptor activation and inhibits Nrp2/VEGF receptor complex formation.
  • A FACS analysis of Nrp2, VEGFR2 ad VEGFR3 levels on the surface of LEC after treatment with control antibody (10 ⁇ g/ml; green line) or Anti-Nrp2 B (10 ⁇ g/ml) for 5 minutes (blue line), or 20 hours (red line).
  • VEGFC concentration as noted
  • Anti-Nrp2 B 10 ⁇ g/ml
  • VEGFR3 ECD 10 ⁇ g/ml
  • VEGFR2 phosphorylation level in anti-Nrp2 B (10 ⁇ g/ml) treated cells was significantly different from the VEGFC stimulation at 200 ng/ml and consistently lay between the phosphorylation level induced by 175 ng/n1 and 150 ng/ml of VEGFC.
  • Nrp2 is expressed in the lymphatics of tumor bearing mice.
  • A-D LYVE-1 staining (left column—red) labeling lymphatics, Nrp2 staining (middle column—green) and the overlay in the (A) intestine and (B) lymph node of normal adult mouse.
  • Nrp2 signal does not co-localize with LYVE-1 labeled lymphatics in either organ.
  • Rare Nrp2 staining inflammatory cells are present within the fibrostromal core of the intestinal villi and within the lymph node germinal centers (C) In lymph nodes from tumor bearing animals, Nrp2 signal does co-localize with LYVE-1 positive lymphatic vessels lining the LN sinuses.
  • Nrp2 staining inflammatory cells are also present.
  • D Strong Nrp2 staining is also seen in lymphatic vessels within 66c14 tumors.
  • E Weak membranous staining can be also seen on tumor cells. Seconday only stained controls did not show any signal. Boxed areas are shown at high magnification within insets. Scale bar *** for A-C and ** for D.
  • FIG. 5 Anti-Nrp2 B treatment results in a reduction of lung metastasis in the 66c 14 tumor model.
  • A Mean tumor volume graph of 66c 14 tumor model study analyzed below. Animals were dosed twice weekly i.p. with 10 mg/kg Anti-Nrp2 B or control antibody once tumors reached an average size of 100 mm 3 and were dosed throughout the study.
  • B Quantification by visual inspection of the number of metastatic nodules per lung in control and Anti-Nrp2 B treated animals.
  • C Representative images of lungs from control (left) and Anti-Nrp2 B (right) treated animals. Lungs were inflated prior to fixation by right cardiac ventricular perfusion. Nodules are highlighted in white to facilitate visualization.
  • H H&E staining of a lung nodule demonstrating metastatic tumor cells. Error bars represent standard error of the mean. Scale bar *** for C and ** for H.
  • FIG. 6 Anti-Nrp2 B treatment results in a reduction of lung metastasis in the C6 tumor model.
  • A Mean tumor volume graph of C6 tumor model study analyzed below. Animals were dosed twice weekly i.p. with Anti-Nrp2 B (10 mg/kg), VEGFR3 ECD (25 mg/kg) or control antibody (10 mg/kg) once tumors reached an average size of 100 mm 3 and were dosed throughout the study.
  • B Quantification by visual inspection of the number of metastatic nodules per lung in control, VEGFR3 ECD and Anti-Nrp2 B treated animals.
  • C Representative images of lungs from control (left), VEGFR3 ECD (middle) and Anti-Nrp2 3 (right) treated animals.
  • FIG. 7 Anti-Nrp2 B treatment results in a reduction of tumor lymphatic vessels.
  • A, B Quantification of vascular vessel density (A) as detected by PECAM-1 IHC and lymphatic vessel density (B) as detected by LYVE-1 IHC in 66c14 tumors treated with control antibody or Anti-Nrp2 B .
  • Vessel density was determined from 6 representative images from each of 6 tumors per group, evaluated for mean pixel number by ImageJ.
  • C Representative mages of PECAM-1 stained vessels (top row) and LYVE-1 stained lymphatic vessels (middle and bottom rows) in C6 tumors treated with control antibody (left column), VEGFR3 ECD (middle column) or Anti-Nrp2 B (right column).
  • FIG. 8 Anti-Nrp2 B treatment results in a reduction of functional tumor lymphatic vessels and leads to a delay in metastasis to the primary lymph node.
  • A,B Polystyrene fluorescent micro-beads (green) are seen exclusively in lymphatic vessels labeled by LYVE-1 IHC (red) after intradermal lymphangiography. The boxed area in A is shown at higher magnification in B.
  • FIG. 9 Expression of Nrp2 in different human malignancies.
  • A-F Affymetrix HG-U133A and B GeneChip® microarray data for Nrp2 expression in normal colon and colorectal adenocarcinoma (A), normal head and neck tissues and head and neck squamous cell carcinoma (B), normal pancreas and pancreatic adenocarcinoma (C), normal skin and malignant melanoma (D), normal thyroid and papillary thyroid carcinoma (E), and normal breast and Her2-infiltrating ductal adenocarcinoma (F). Each datapoint represents one patient.
  • FIG. 10 Amino acid sequences of anti-Nrp2 B antibody YW68.4.2 and YW68.4.2.36 (SEQ ID NOs:1 and 2, respectively).
  • FIG. 11 Amino acid sequence of anti-Nrp2A antibody YW126.20 Fab fragment (SEQ ID NO: 3).
  • FIG. 12 Alignment of anti-Nrp2A antibody YW126.20 light chain variable domain sequence (SEQ ID NO: 5) with human ⁇ 1 sequence (SEQ ID NO: 4).
  • FIG. 13 Alignment of anti-Nrp2A antibody YW126.20 heavy chain variable domain sequence (SEQ ID NO: 7) with human III (hum III) sequence (SEQ ID NO: 6).
  • FIG. 14 FACS analysis of VEGF axis receptors' levels on the surface of in vitro cultured LECs. FACS analysis of Nrp1, Nrp2, VEGFR1, VEGFR2 ad VEGFR3 on cultured LECs.
  • FIG. 15 Anti-Nrp2 B does not block VEGF 165 -induced migration.
  • A-B Quantification of HUVEC (A) and LEC (B) migrating in response to 200 ng/ml of VEGF for 18 hours in the presence or absence of Anti-Nrp1 B , Anti-Nrp2 B (50 ⁇ g/ml) or both antibodies (50 ⁇ g/ml). *p ⁇ 0.05; Error bars represent standard error of the mean.
  • FIG. 16 Effects of Anti-Nrp2 B on VEGFC mediated proliferation and vascular permeability and associated intracellular signaling.
  • B Mouse skin vascular permeability assay. Images were taken from the skin of the same animal. Blue stain represents Evan's blue leakage from the vasculature in response to intradermal delivery of VEGFC after systemic treatment with Anti-Nrp2 B (10 mg/kg) or VEGFR3 ECD (25 mg/kg). Quantification of the Evan's blue dye extracted from skin samples in the permeability assay. Values shown are the average of 6 independent experiments. *p ⁇ 0.05; Error bars represent standard error of the mean.
  • FIG. 17 Anti-Nrp2 B does not block Sema3F induced growth cone collapse.
  • A Images of E 17.5 Hippocampal growth cones stained with rhodamine conjugated phalloidin. Control growth cones show large actin rich structures at the tip of each axon, which are reduced with Sema3F treatment.
  • Anti-Nrp2 B (50 ⁇ m/ml) does not block this collapse.
  • Nrp2 ECD (10 ug/ml) does block this collapse.
  • B Quality control for anti-Nrp2 immunohistochemistry. Image shows a phage-derived clone that recognized Nrp2 that works in IHC on fresh frozen sections.
  • FIG. 18 (A) Micro-CT images of lungs (B) Comparison of lung tumor volume estimates.
  • Neuropilin neuropilin-1
  • NRP2 neuropilin-2
  • NRP1 neuropilin-1
  • NRP2 neuropilin-2
  • NRP2 neuropilin-2
  • the basic structure of neuropilins comprises five domains: three extracellular domains (a1a2, b1b2 and c), a transmembrane domain, and a cytoplasmic domain.
  • the a1a2 domain is homologous to complement components C1r and C1s (CUB), which generally contains four cysteine residues that form two disculfid bridges.
  • CB complement components
  • the b1b2 domain is homologous to coagulation factors V and VIII.
  • the central portion of the c domain is designated as MAM due to its homology to meprin, A5 and receptor tyrosine phosphotase ⁇ proteins.
  • the a1a2 and b1b2 domains are responsible for ligand binding, whereas the c domain is critical for homodimerization or heterodimerization. Gu et al. (2002) J. Biol. Chem. 277:18069-76; He and Tessier-Lavigne (1997) Cell 90:739-51.
  • Neuropilin mediated biological activity refers in general to physiological or pathological events in which neuropilin-1 and/or neuropilin-2 plays a substantial role.
  • Non-limiting examples of such activities are axon guidance during embryonic nervous system development or neuron-regeneration, angiogenesis (including vascular modeling), tumorgenesis and tumor metastasis.
  • Neropilin-2 mediated biological activity or “Nrp2 mediated biological activity,” as used herein, refers in general to physiological or pathological events in which Nrp2 plays a substantial role, such as, for example, enhancing VEGF receptor activation, and, in particular, the ability to modulate lymphatic endothelial cell (EC) migration, role in adult lymphangiogenesis, especially tumoral lymphangiogenesis and tumor metastasis.
  • Nrp2 refers in general to physiological or pathological events in which Nrp2 plays a substantial role, such as, for example, enhancing VEGF receptor activation, and, in particular, the ability to modulate lymphatic endothelial cell (EC) migration, role in adult lymphangiogenesis, especially tumoral lymphangiogenesis and tumor metastasis.
  • EC lymphatic endothelial cell
  • antibody is used in the broadest sense and specifically covers monoclonal antibodies (including full length monoclonal antibodies), polyclonal antibodies, multispecific antibodies (e.g., bispecific antibodies), and antibody fragments so long as they exhibit the desired biological activity.
  • the term “monoclonal antibody” as used herein refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e., the individual antibodies comprising the population are identical except for possible naturally occurring mutations that may be present in minor amounts. Monoclonal antibodies are highly specific, being directed against a single antigenic site. Furthermore, in contrast to conventional (polyclonal) antibody preparations which typically include different antibodies directed against different determinants (epitopes), each monoclonal antibody is directed against a single determinant on the antigen.
  • the modifier “monoclonal” indicates the character of the antibody as being obtained from a substantially homogeneous population of antibodies, and is not to be construed as requiring production of the antibody by any particular method.
  • the monoclonal antibodies to be used in accordance with the present invention may be made by the hybridoma method first described by Kohler et al. (1975) Nature 256:495, or may be made by recombinant DNA methods (see, e.g., U.S. Pat. No. 4,816,567).
  • the “monoclonal antibodies” may also be isolated from phage antibody libraries using the techniques described in Clackson et al. (1991) Nature 352:624-628 and Marks et al. (1991) J. Mol. Biol. 222:581-597, for example.
  • the monoclonal antibodies herein specifically include “chimeric” antibodies (immunoglobulins) in which a portion of the heavy and/or light chain is identical with or homologous to corresponding sequences in antibodies derived from a particular species or belonging to a particular antibody class or subclass, while the remainder of the chain(s) is identical with or homologous to corresponding sequences in antibodies derived from another species or belonging to another antibody class or subclass, as well as fragments of such antibodies, so long as they exhibit the desired biological activity (U.S. Pat. No. 4,816,567; and Morrison et al. (1984) Proc. Natl. Acad. Sci. USA 81:6851-6855).
  • chimeric antibodies immunoglobulins in which a portion of the heavy and/or light chain is identical with or homologous to corresponding sequences in antibodies derived from a particular species or belonging to a particular antibody class or subclass, while the remainder of the chain(s) is identical with or homologous to corresponding sequences in
  • “Humanized” forms of non-human (e.g., murine) antibodies are chimeric antibodies which contain minimal sequence derived from non-human immunoglobulin.
  • humanized antibodies are human immunoglobulins (recipient antibody) in which residues from a hypervariable region of the recipient are replaced by residues from a hypervariable region of a non-human species (donor antibody) such as mouse, rat, rabbit or nonhuman primate having the desired specificity, affinity, and capacity.
  • donor antibody such as mouse, rat, rabbit or nonhuman primate having the desired specificity, affinity, and capacity.
  • Fv framework region (FR) residues of the human immunoglobulin are replaced by corresponding non-human residues.
  • humanized antibodies may comprise residues which are not found in the recipient antibody or in the donor antibody. These modifications are made to further refine antibody performance.
  • the humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the hypervariable loops correspond to those of a non-human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin sequence.
  • the humanized antibody optionally also will comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin.
  • Fc immunoglobulin constant region
  • a “species-dependent antibody” is one which has a stronger binding affinity for an antigen from a first mammalian species than it has for a homologue of that antigen from a second mammalian species.
  • the species-dependent antibody “binds specifically” to a human antigen (i.e. has a binding affinity (K d ) value of no more than about 1 ⁇ 10 ⁇ 7 M, preferably no more than about 1 ⁇ 10 ⁇ 8 M and most preferably no more than about 1 ⁇ 10 ⁇ 9 M) but has a binding affinity for a homologue of the antigen from a second nonhuman mammalian species which is at least about 50 fold, or at least about 500 fold, or at least about 1000 fold, weaker than its binding affinity for the human antigen.
  • the species-dependent antibody can be any of the various types of antibodies as defined above, but preferably is a humanized or human antibody.
  • antibody mutant refers to an amino acid sequence variant of the species-dependent antibody wherein one or more of the amino acid residues of the species-dependent antibody have been modified. Such mutants necessarily have less than 100% sequence identity or similarity with the species-dependent antibody.
  • the antibody mutant will have an amino acid sequence having at least 75% amino acid sequence identity or similarity with the amino acid sequence of either the heavy or light chain variable domain of the species-dependent antibody, more preferably at least 80%, more preferably at least 85%, more preferably at least 90%, and most preferably at least 95%.
  • Identity or similarity with respect to this sequence is defined herein as the percentage of amino acid residues in the candidate sequence that are identical (i.e same residue) or similar (i.e. amino acid residue from the same group based on common side-chain properties, see below) with the species-dependent antibody residues, after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percent sequence identity. None of N-terminal, C-terminal, or internal extensions, deletions, or insertions into the antibody sequence outside of the variable domain shall be construed as affecting sequence identity or similarity.
  • an “isolated” antibody is one which has been identified and separated and/or recovered from a component of its natural environment. Contaminant components of its natural environment are materials which would interfere with diagnostic or therapeutic uses for the antibody, and may include enzymes, hormones, and other proteinaceous or nonproteinaceous solutes.
  • the antibody will be purified (1) to greater than 95% by weight of antibody as determined by the Lowry method, and most preferably more than 99% by weight, (2) to a degree sufficient to obtain at least 15 residues of N-terminal or internal amino acid sequence by use of a spinning cup sequenator, or (3) to homogeneity by SDS-PAGE under reducing or nonreducing conditions using Coomassie blue or, preferably, silver stain.
  • Isolated antibody includes the antibody in situ within recombinant cells since at least one component of the antibody's natural environment will not be present. Ordinarily, however, isolated antibody will be prepared by at least one purification step.
  • antibody variable domain refers to the portions of the light and heavy chains of antibody molecules that include amino acid sequences of Complementarity Determining Regions (CDRs; ie., CDR1, CDR2, and CDR3), and Framework Regions (FRs).
  • CDRs Complementarity Determining Regions
  • FRs Framework Regions
  • V H refers to the variable domain of the heavy chain.
  • V L refers to the variable domain of the light chain.
  • the amino acid positions assigned to CDRs and FRs may be defined according to Kabat (Sequences of Proteins of Immunological Interest (National Institutes of Health, Bethesda, Md., 1987 and 1991)). Amino acid numbering of antibodies or antigen binding fragments is also according to that of Kabat.
  • CDRs Complementarity Determining Regions
  • Each variable domain typically has three CDR regions identified as CDR1, CDR2 and CDR3.
  • Each complementarity determining region may comprise amino acid residues from a “complementarity determining region” as defined by Kabat (i.e.
  • a complementarity determining region can include amino acids from both a CDR region defined according to Kabat and a hypervariable loop.
  • the CDRH1 of the heavy chain of antibody 4D5 includes amino acids 26 to 35.
  • FR Framework regions
  • Each variable domain typically has four FRs identified as FR1, FR2, FR3 and FR4.
  • the CDRs are defined according to Kabat, the light chain FR residues are positioned at about residues 1-23 (LCFR1), 35-49 (LCFR2), 57-88 (LCFR3), and 98-107 (LCFR4) and the heavy chain FR residues are positioned about at residues 1-30 (HCFR1), 36-49 (HCFR2), 66-94 (HCFR3), and 103-113 (HCFR4) in the heavy chain residues.
  • the light chain FR residues are positioned about at residues 1-25 (LCFR1), 33-49 (LCFR2), 53-90 (LCFR3), and 97-107 (LCFR4) in the light chain and the heavy chain FR residues are positioned about at residues 1-25 (HCFR1), 33-52 (HCFR2), 56-95 (HCFR3), and 102-113 (HCFR4) in the heavy chain residues.
  • the FR residues will be adjusted accordingly.
  • CDRH1 includes amino acids H26-H35
  • the heavy chain FR1 residues are at positions 1-25 and the FR2 residues are at positions 36-49.
  • codon set refers to a set of different nucleotide triplet sequences used to encode desired variant amino acids.
  • a set of oligonucleotides can be synthesized, for example, by solid phase synthesis, including sequences that represent all possible combinations of nucleotide triplets provided by the codon set and that will encode the desired group of amino acids.
  • a standard form of codon designation is that of the IUB code, which is known in the art and described herein.
  • a codon set typically is represented by 3 capital letters in italics, eg. NNK, NNS, XYZ, DVK and the like.
  • a “non-random codon set”, as used herein, thus refers to a codon set that encodes select amino acids that fulfill partially, preferably completely, the criteria for amino acid selection as described herein.
  • Synthesis of oligonucleotides with selected nucleotide “degeneracy” at certain positions is well known in that art, for example the TRIM approach (Knappek et al. (1999) J. Mol. Biol. 296:57-86); Garrard & Henner (1993) Gene 128:103).
  • Such sets of oligonucleotides having certain codon sets can be synthesized using commercial nucleic acid synthesizers (available from, for example, Applied Biosystems, Foster City, Calif.), or can be obtained commercially (for example, from Life Technologies, Rockville, Md.). Therefore, a set of oligonucleotides synthesized having a particular codon set will typically include a plurality of oligonucleotides with different sequences, the differences established by the codon set within the overall sequence. Oligonucleotides, as used according to the invention, have sequences that allow for hybridization to a variable domain nucleic acid template and also can, but does not necessarily, include restriction enzyme sites useful for, for example, cloning purposes.
  • an “Fv” fragment is an antibody fragment which contains a complete antigen recognition and binding site.
  • This region consists of a dimer of one heavy and one light chain variable domain in tight association, which can be covalent in nature, for example in scFv. It is in this configuration that the three CDRs of each variable domain interact to define an antigen binding site on the surface of the V H -V L dimer.
  • the six CDRs or a subset thereof confer antigen binding specificity to the antibody.
  • a single variable domain or half of an Fv comprising only three CDRs specific for an antigen
  • the “Fab” fragment contains a variable and constant domain of the light chain and a variable domain and the first constant domain (CH1) of the heavy chain.
  • F(ab′) 2 antibody fragments comprise a pair of Fab fragments which are generally covalently linked near their carboxy termini by hinge cysteines between them. Other chemical couplings of antibody fragments are also known in the art.
  • Single-chain Fv or “scFv” antibody fragments comprise the V H and V L domains of antibody, wherein these domains are present in a single polypeptide chain.
  • the Fv polypeptide further comprises a polypeptide linker between the V H and V L domains, which enables the scFv to form the desired structure for antigen binding.
  • diabodies refers to small antibody fragments with two antigen-binding sites, which fragments comprise a heavy chain variable domain (V H ) connected to a light chain variable domain (V L ) in the same polypeptide chain (V H and V 1 ).
  • V H heavy chain variable domain
  • V L light chain variable domain
  • V H and V 1 polypeptide chain
  • linker that is too short to allow pairing between the two domains on the same chain, the domains are forced to pair with the complementary domains of another chain and create two antigen-binding sites.
  • Diabodies are described more fully in, for example, EP 404,097; WO 93/11161; and Hollinger et al. (1993) Proc. Natl. Acad. Sci. USA 90:6444-6448.
  • linear antibodies refers to the antibodies described in Zapata et al. (1995 Protein Eng, 8(10):1057-1062). Briefly, these antibodies comprise a pair of tandem Fd segments (V H -C H 1-V H -C H 1) which, together with complementary light chain polypeptides, form a pair of antigen binding regions. Linear antibodies can be bispecific or monospecific.
  • library refers to a plurality of antibody or antibody fragment sequences (for example, polypeptides of the invention), or the nucleic acids that encode these sequences, the sequences being different in the combination of variant amino acids that are introduced into these sequences according to the methods of the invention.
  • “Phage display” is a technique by which variant polypeptides are displayed as fusion proteins to at least a portion of coat protein on the surface of phage, e.g., filamentous phage, particles.
  • a utility of phage display lies in the fact that large libraries of randomized protein variants can be rapidly and efficiently sorted for those sequences that bind to a target antigen with high affinity. Display of peptide and protein libraries on phage has been used for screening millions of polypeptides for ones with specific binding properties. Polyvalent phage display methods have been used for displaying small random peptides and small proteins through fusions to either gene III or gene VIII of filamentous phage. Wells and Lowman (1992) Curr. Opin. Struct. Biol.
  • a protein or peptide library is fused to a gene III or a portion thereof, and expressed at low levels in the presence of wild type gene III protein so that phage particles display one copy or none of the fusion proteins.
  • Avidity effects are reduced relative to polyvalent phage so that sorting is on the basis of intrinsic ligand affinity, and phagemid vectors are used, which simplify DNA manipulations. Lowman and Wells (1991) Methods: A companion to Methods in Enzymology 3:205-0216.
  • a “phagemid” is a plasmid vector having a bacterial origin of replication, e.g., Co1E1, and a copy of an intergenic region of a bacteriophage.
  • the phagemid may be used on any known bacteriophage, including filamentous bacteriophage and lambdoid bacteriophage.
  • the plasmid will also generally contain a selectable marker for antibiotic resistance. Segments of DNA cloned into these vectors can be propagated as plasmids. When cells harboring these vectors are provided with all genes necessary for the production of phage particles, the mode of replication of the plasmid changes to rolling circle replication to generate copies of one strand of the plasmid DNA and package phage particles.
  • the phagemid may form infectious or non-infectious phage particles.
  • This term includes phagemids which contain a phage coat protein gene or fragment thereof linked to a heterologous polypeptide gene as a gene fusion such that the heterologous polypeptide is displayed on the surface of the phage particle.
  • phage vector means a double stranded replicative form of a bacteriophage containing a heterologous gene and capable of replication.
  • the phage vector has a phage origin of replication allowing phage replication and phage particle formation.
  • the phage is preferably a filamentous bacteriophage, such as an M13, fl, fd, Pf3 phage or a derivative thereof, or a lambdoid phage, such as lambda, 21, phi80, phi81, 82, 424, 434, etc., or a derivative thereof.
  • solvent accessible position refers to a position of an amino acid residue in the variable regions of the heavy and light chains of a source antibody or antigen binding fragment that is determined, based on structure, ensemble of structures and/or modeled structure of the antibody or antigen binding fragment, as potentially available for solvent access and/or contact with a molecule, such as an antibody-specific antigen. These positions are typically found in the CDRs and on the exterior of the protein.
  • the solvent accessible positions of an antibody or antigen binding fragment, as defined herein, can be determined using any of a number of algorithms known in the art.
  • solvent accessible positions are determined using coordinates from a 3-dimensional model of an antibody, preferably using a computer program such as the InsightII program (Accelrys, San Diego, Calif.).
  • Solvent accessible positions can also be determined using algorithms known in the art (e.g., Lee and Richards (1971) J. Mol. Biol. 55, 379 and Connolly (1983) J. Appl. Cryst. 16, 548). Determination of solvent accessible positions can be performed using software suitable for protein modeling and 3-dimensional structural information obtained from an antibody. Software that can be utilized for these purposes includes SYBYL Biopolymer Module software (Tripos Associates).
  • the “size” of a probe which is used in the calculation is set at about 1.4 Angstrom or smaller in radius.
  • determination of solvent accessible regions and area methods using software for personal computers has been described by Pacios (1994) Comput. Chem. 18(4): 377-386.
  • angiogenic factor or agent is a growth factor which stimulates the development of blood vessels, e.g., promote angiogenesis, endothelial cell growth, stabiliy of blood vessels, and/or vasculogenesis, etc.
  • angiogenic factors include, but are not limited to, e.g., VEGF and members of the VEGF family, PIGF, PDGF family, fibroblast growth factor family (FGFs), TIE ligands (Angiopoietins), ephrins, Del-1, fibroblast growth factors: acidic (aFGF) and basic (bFGF), Follistatin, Granulocyte colony-stimulating factor (G-CSF), Hepatocyte growth factor (HGF)/scatter factor (SF), Interleukin-8 (IL-8), Leptin, Midkine, neuropilins, Placental growth factor, Platelet-derived endothelial cell growth factor (PD-ECGF), Platelet-derived growth factor,
  • IGF-I insulin-like growth factor-I
  • VIGF insulin-like growth factor
  • EGF epidermal growth factor
  • CTGF tumor necrosis factor
  • TGF-alpha and TGF-beta TGF-beta.
  • an “anti-angiogenesis agent” or “angiogenesis inhibitor” refers to a small molecular weight substance, an polynucleotide, an polypeptide, an isolated protein, a recombinant protein, an antibody, or conjugates or fusion proteins thereof, that inhibits angiogenesis, vasculogenesis, or undesirable vascular permeability, either directly or indirectly. It should be understood that theanti-angiogenesis agent includes those agents that bind and block the angiogenic activity of the angiogenic factor or its receptor.
  • an anti-angiogenesis agent is an antibody or other antagonist to an angiogenic agent as defined above, e.g., antibodies to VEGF-A or to the VEGF-A receptor (e.g., KDR receptor or Flt-1 receptor), anti-PDGFR inhibitors such as GleevecTM (Imatinib Mesylate).
  • Anti-angiogensis agents also include native angiogenesis inhibitors, e.g., angiostatin, endostatin, etc. See, e.g., Klagsbrun and D'Amore (1991) Annu. Rev.
  • Oncogene 22:3172-3179 e.g., Table 3 listing anti-angiogenic therapy in malignant melanoma
  • Tonini et al. (2003) Oncogene 22:6549-6556 e.g., Table 2 listing known antiangiogenic factors
  • Sato (2003) Int. J. Clin. Oncol. 8:200-206 e.g., Table 1 listing anti-angiogenic agents used in clinical trials.
  • VEGF refers to the 165-amino acid human vascular endothelial cell growth factor and related 121-, 189-, and 206-amino acid human vascular endothelial cell growth factors, as described by Leung et al. (1989) Science 246:1306, and Houck et al. (1991) Mol. Endocrin, 5:1806, together with the naturally occurring allelic and processed forms thereof.
  • VEGF also refers to VEGFs from non-human species such as mouse, rat or primate. Sometimes the VEGF from a specific species are indicated by terms such as hVEGF for human VEGF, mVEGF for murine VEGF, and etc.
  • VEGF is also used to refer to truncated forms of the polypeptide comprising amino acids 8 to 109 or 1 to 109 of the 165-amino acid human vascular endothelial cell growth factor. Reference to any such forms of VEGF may be identified in the present application, e.g., by “VEGF (8-109),” “VEGF (1-109)” or “VEGF 165 .”
  • the amino acid positions for a “truncated” native VEGF are numbered as indicated in the native VEGF sequence. For example, amino acid position 17 (methionine) in truncated native VEGF is also position 17 (methionine) in native VEGF.
  • the truncated native VEGF has binding affinity for the KDR and Flt-1 receptors comparable to native VEGF.
  • an “anti-VEGF antibody” is an antibody that binds to VEGF with sufficient affinity and specificity.
  • the anti-VEGF antibody of the invention can be used as a therapeutic agent in targeting and interfering with diseases or conditions wherein the VEGF activity is involved.
  • An anti-VEGF antibody will usually not bind to other VEGF homologues such as VEGF-B or VEGF-C, nor other growth factors such as PIGF, PDGF or bFGF.
  • a preferred anti-VEGF antibody is a monoclonal antibody that binds to the same epitope as the monoclonal anti-VEGF antibody A4.6.1 produced by hybridoma ATCC HB 10709.
  • the anti-VEGF antibody is a recombinant humanized anti-VEGF monoclonal antibody generated according to Presta et al. (1997) Cancer Res. 57:4593-4599, including but not limited to the antibody known as bevacizumab (BV; AvastinTM).
  • Bevacizumab (By)
  • rhuMAb VEGF vascular endothelial growth factor
  • Avastin® is a recombinant humanized anti-VEGF monoclonal antibody generated according to Presta et al. (1997) Cancer Res. 57:4593-4599. It comprises mutated human IgG1 framework regions and antigen-binding complementarity-determining regions from the murine anti-hVEGF monoclonal antibody A.4.6.1 that blocks binding of human VEGF to its receptors. Approximately 93% of the amino acid sequence of Bevacizumab, including most of the framework regions, is derived from human IgG1, and about 7% of the sequence is derived from the murine antibody A4.6.1. Bevacizumab has a molecular mass of about 149,000 daltons and is glycosylated.
  • VEGFC and “VEGF-C” are used interchangeably, and refer to a 419-amino acid human polypeptide (SwissProt: VEGFC_HUMAN P49767), and non-human mammalian orthologs thereof, first described by Joukov et al., EMBO J 15, 290-98 (1996), and EMBO J 15, 1751 (1996).
  • Nrp2 antagonist is used herein to refer to a molecule capable of neutralizing, blocking, inhibiting, abrogating, reducing or interfering with the ability of Nrp2 to modulate lymphatic endothelial cell (EC) migration, or adult lymphangiogenesis, especially tumoral lymphangiogenesis and tumor metastasis.
  • EC lymphatic endothelial cell
  • VEGF antagonist refers to a molecule capable of neutralizing, blocking, inhibiting, abrogating, reducing or interfering with VEGF activities including, but not limited to, its binding to one or more VEGF receptors.
  • VEGF antagonists include, without limitation, anti-VEGF antibodies and antigen-binding fragments thereof, receptor molecules and derivatives which bind specifically to VEGF thereby sequestering its binding to one or more receptors, anti-VEGF receptor antibodies and VEGF receptor antagonists such as small molecule inhibitors of the VEGFR tyrosine kinases.
  • VEGF antagonist specifically includes molecules, including antibodies, antibody fragments, other binding polypeptides, peptides, and non-peptide small molecules, that bind to neuropilin-1 and/or neuropilin-2 (Nrp-1 and/or Nrp-2) and are capable of neutralizing, blocking, inhibiting, abrogating, reducing or interfering with VEGF activities including, but not limited to, anti-Nrp1 and anti-Nrp2 antibodies and antibodies cross-reacting with Nrp1 and Nrp2, provided they are capable of neutralizing, blocking, inhibiting, abrogating, reducing or interfering with VEGF activities.
  • VEGF activities specifically includes neuropilin mediated biological activities (as hereinabove defined) of VEGF.
  • a “semaphorin antagonists” refers to a molecule capable of neutralizing, blocking, inhibiting, abrogating, reducing or interfering with semaphorin activities including, but not limited to, its binding to one or more semaphorin receptors.
  • Semaphorin antagonists include, without limitation, anti-semaphorin antibodies and antigen-binding fragments thereof, receptor molecules and derivatives which bind specifically to semaphorin thereby sequestering its binding to one or more receptors, anti-semaphorin receptor antibodies and semaphorin receptor antagonists such as small molecule inhibitors of semaphorins.
  • semaphorin antagonist specifically includes molecules, including antibodies, antibody fragments, other binding polypeptides, peptides, and non-peptide small molecules, that bind to neuropilin-1 and/or neuropilin-2 (Nrp-1 and/or Nrp-2) and are capable of neutralizing, blocking, inhibiting, abrogating, reducing or interfering with semaphorin activities including, but not limited to, anti-Nrp1 and anti-Nrp2 antibodies and antibodies cross-reacting with Nrp1 and Nrp2, provided they are capable of neutralizing, blocking, inhibiting, abrogating, reducing or interfering with semaphorin activities.
  • semaphorin activities specifically includes neuropilin mediated biological activities (as hereinabove defined) of class 3 semaphorins.
  • biological activities include, for example, neurite growth inhibitory effect during embryonic nervous system development and neuron-regeneration.
  • Treatment refers to both therapeutic treatment and prophylactic or preventative measures. Those in need of treatment include those already with the disorder as well as those in which the disorder is to be prevented.
  • a “disorder” is any condition that would benefit from treatment.
  • This includes chronic and acute disorders or diseases including those pathological conditions which predispose the mammal to the disorder in question.
  • disorders to be treated herein include malignant and benign tumors; non-leukemias and lymphoid malignancies; and, in particular, tumor (cancer) metastasis.
  • cancer and “cancerous” refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth.
  • Examples of cancer include but are not limited to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia.
  • cancers include squamous cell cancer, lung cancer (including small-cell lung cancer, non-small cell lung cancer, adenocarcinoma of the lung, and squamous carcinoma of the lung), cancer of the peritoneum, hepatocellular cancer, gastric or stomach cancer (including gastrointestinal cancer), pancreatic cancer, glioblastoma, cervical cancer, ovarian cancer, liver cancer, bladder cancer, hepatoma, breast cancer, colon cancer, colorectal cancer, endometrial or uterine carcinoma, salivary gland carcinoma, kidney or renal cancer, liver cancer, prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma and various types of head and neck cancer, as well as B-cell lymphoma (including low grade/follicular non-Hodgkin's lymphoma (NHL); small lymphocytic (SL) NHL; intermediate grade/follicular NHL; intermediate grade diffuse NHL; high grade immunoblastic NHL; high grade lymphoblastic NHL; high grade small non-clea
  • anti-neoplastic composition refers to a composition useful in treating cancer comprising at least one active therapeutic agent, e.g., “anti-cancer agent.”
  • therapeutic agents include, but are limited to, e.g., chemotherapeutic agents, growth inhibitory agents, cytotoxic agents, agents used in radiation therapy, anti-angiogenesis agents, apoptotic agents, anti-tubulin agents, and other-agents to treat cancer, such as anti-HER-2 antibodies, anti-CD20 antibodies, an epidermal growth factor receptor (EGFR) antagonist (e.g., a tyrosine kinase inhibitor), HERUEGFR inhibitor (e.g., erlotinib (TarcevaTM), platelet derived growth factor inhibitors (e.g., GleevecTM (Imatinib Mesylate)), a COX-2 inhibitor (e.g., celecoxib), interferons, cytokines, antagonists (e.g., cytokines, antagonists (
  • cytotoxic agent refers to a substance that inhibits or prevents the function of cells and/or causes destruction of cells.
  • the term is intended to include radioactive isotopes (e.g., I 131 , I 125 , Y 90 and Re 186 ), chemotherapeutic agents, and toxins such as enzymatically active toxins of bacterial, fungal, plant or animal origin, or fragments thereof.
  • a “chemotherapeutic agent” is a chemical compound useful in the treatment of cancer.
  • chemotherapeutic agents include is a chemical compound useful in the treatment of cancer.
  • chemotherapeutic agents include alkylating agents such as thiotepa and CYTOXAN® cyclosphosphamide; alkyl sulfonates such as busulfan, improsulfan and piposulfan; aziridines such as benzodopa, carboquone, meturedopa, and uredopa; ethylenimines and methylamelamines including altretamine, triethylenemelamine, trietylenephosphoramide, triethiylenethiophosphoramide and trimethylolomelamine; acetogenins (especially bullatacin and bullatacinone); a camptothecin (including the synthetic analogue topotecan); bryostatin; callystatin; CC-1065 (including its adozeles
  • dynemicin including dynemicin A; bisphosphonates, such as clodronate; an esperamicin; as well as neocarzinostatin chromophore and related chromoprotein enediyne antiobiotic chromophores), aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin, carabicin, caminomycin, carzinophilin, chromomycinis, dactinomycin, daunorubicin, detorubicin, 6-diazo-5-oxo-L-norleucine, ADRIAMYCIN® doxorubicin (including morpholino-doxorubicin, cyanomorpholino-doxorubicin, 2-pyrrolino-doxorubicin and deoxydoxorubicin), epirubicin,
  • anti-hormonal agents that act to regulate or inhibit hormone action on tumors
  • SERMs selective estrogen receptor modulators
  • tamoxifen including NOLVADEX® tamoxifen
  • raloxifene including NOLVADEX® tamoxifen
  • droloxifene 4-hydroxytamoxifen
  • trioxifene keoxifene
  • LY117018 onapristone
  • aromatase inhibitors that inhibit the enzyme aromatase, which regulates estrogen production in the adrenal glands, such as, for example, 4(5)-imidazoles, aminoglutethimide, MEGASE® megestrol acetate, AROMASIN® exemestane, formestanie, fadrozole, RIVISOR® vorozole, FEMARA® letrozole, and ARIMIDEX® anastrozole
  • anti-androgens such as flutamide, nilu
  • prodrug refers to a precursor or derivative form of a pharmaceutically active substance that is less cytotoxic to tumor cells compared to the parent drug and is capable of being enzymatically activated or converted into the more active parent form.
  • Wilman “Prodrugs in Cancer Chemotherapy” Biochemical Society Transactions, 14, pp. 375-382, 615th Meeting Harbor and Stella et al. (1985). “Prodrugs: A Chemical Approach to Targeted Drug Delivery,” Directed Drug Delivery , Borchardt et al, (ed.), pp. 247-267, Humana Press.
  • the prodrugs of this invention include, but are not limited to, phosphate-containing prodrugs, thiophosphate-containing prodrugs, sulfate-containing prodrugs, peptide-containing prodrugs, D-amino acid-modified prodrugs, glycosylated prodrugs, ⁇ -lactam-containing prodrugs, optionally substituted phenoxyacetamide-containing prodrugs or optionally substituted phenylacetamide-containing prodrugs, 5-fluorocytosine and other 5-fluorouridine prodrugs which can be converted into the more active cytotoxic free drug.
  • cytotoxic drugs that can be derivatized into a prodrug form for use in this invention include, but are not limited to, those chemotherapeutic agents described above.
  • a “small molecule” is defined herein to have a molecular weight below about 500 Daltons.
  • an “isolated” nucleic acid molecule is a nucleic acid molecule that is identified and separated from at least one contaminant nucleic acid molecule with which it is ordinarily associated in the natural source of the antibody nucleic acid.
  • An isolated nucleic acid molecule is other than in the form or setting in which it is found in nature. Isolated nucleic acid molecules therefore are distinguished from the nucleic acid molecule as it exists in natural cells.
  • an isolated nucleic acid molecule includes a nucleic acid molecule contained in cells that ordinarily express the antibody where, for example, the nucleic acid molecule is in a chromosomal location different from that of natural cells.
  • control sequences refers to DNA sequences necessary for the expression of an operably linked coding sequence in a particular host organism.
  • the control sequences that are suitable for prokaryotes include a promoter, optionally an operator sequence, and a ribosome binding site.
  • Eukaryotic cells are known to utilize promoters, polyadenylation signals, and enhancers.
  • Nucleic acid is “operably linked” when it is placed into a functional relationship with another nucleic acid sequence.
  • DNA for a presequence or secretory leader is operably linked to DNA for a polypeptide if it is expressed as a preprotein that participates in the secretion of the polypeptide;
  • a promoter or enhancer is operably linked to a coding sequence if it affects the transcription of the sequence; or
  • a ribosome binding site is operably linked to a coding sequence if it is positioned so as to facilitate translation.
  • “operably linked” means that the DNA sequences being linked are contiguous, and, in the case of a secretory leader, contiguous and in reading phase. However, enhancers do not have to be contiguous. Linking is accomplished by ligation at convenient restriction sites. If such sites do not exist, the synthetic oligonucleotide adaptors or linkers are used in accordance with conventional practice.
  • the expressions “cell,” “cell line,” and “cell culture” are used interchangeably and all such designations include progeny.
  • the words “transformants” and “transformed cells” include the primary subject cell and cultures derived therefrom without regard for the number of transfers. It is also understood that all progeny may not be precisely identical in DNA content, due to deliberate or inadvertent mutations. Mutant progeny that have the same function or biological activity as screened for in the originally transformed cell are included. Where distinct designations are intended, it will be clear from the context.
  • the present invention is based on experimental data demonstrating that blocking Nrp2 function inhibits tumor metastasis.
  • VEGF vascular endothelial growth factor
  • N-receptor for VEGFC has not been deemed a target for inhibiting tumor metastasis, possibly due to the lack of lymphatic system defects in adult Nrp2 mutant mice.
  • Nrp2 in tumor lymphangiogenesis and metastasis, only in part by modulating VEGFR3 signaling. Additionally, the data set forth in the Examples demonstrate the presence of functional lymphatic vessels within tumors and show that treating with Anti-Nrp2 B results in a reduction of these functional lymphatics.
  • Nrp2 Regulated Selective VEGFC Functions, in Part Through a Mechanism Independent Of VEGF Receptor Activation
  • Nrp2 may selectively affect migration such as modulation of adhesion or motility.
  • Anti-Nrp2 B treatment did not have any effect on LEC mediated adhesion or migration induced by VEGF 165 ( FIG. 2 ), HGF ( FIG. 3 ) or FGF-2, indicating that it did not generally affect migration by disrupting motility.
  • sema3F another ligand of Nrp2 may modulate LEC or EC migration, acting as a chemorepellant (Bielenberg et al., J Clin Invest 114, 1260-1271 (2004); Favier et al., Blood 108, 1243-1250 (2006)).
  • the Anti-Nrp2 B antibody did not inhibit or potentiate the binding of sema3F to Nrp2 ( FIG. 1 ) or the functional effects of sema3F on responsive neurons FIG. 17 ). Thus, it is unlikely that the reduction in VEGFC induced migration by Anti-Nrp2 B can be explained by modulation of sema3F function.
  • Nrp2 B The effect of Anti-Nrp2 B on the formation of the Nrp2/VEGF receptor complex has also been evaluated.
  • Nrp1 In contrast to Nrp1, Nrp2 forms a complex with VEGFR2 and VEGFR3 in the absence of ligand (Favier et al., 2006, supra; Karpanen et al., Faseb J 20, 1462-1472 (2006)).
  • Anti-Nrp2 B strongly inhibits the formation of these complexes.
  • Nrp2 Plays an Important Role in Modulating Adult Lymphangiogenesis.
  • Nrp2 KO mice Analysis of Nrp2 KO mice demonstrates that Nrp2 is a modulator of developmental lymphangiogenesis, presumably via its role as a VEGFC co-receptor (Yuan et al., 2002, supra). However, these mutant mice form functional lymphatics after birth, indicating that either the defect represents a delay rather than inhibition of lymphatic growth or that there is functional compensation by another molecular mediator. Therefore, the role of Nrp2 in maintaining mature lymphatics and modulating adult lymphangiogenesis has not been not known. Expression analysis ( FIG. 4 ) does not support a role of Nrp2 in maintaining lymphatics.
  • Nrp2 is strongly expressed in lymphatics that are present in tumors and within LNs adjacent to tumors, suggesting that Nrp2 may play a role in activated or growing lymphatics.
  • Anti-Nrp2 B was tested in vivo using the corneal micropocket assay ( FIG. 2 ). Anti-Nrp2 B effectively blocked the VEGFC induced lymphangiogenesis, surprisingly equivalently to VEGFR3 ECD. Interestingly, Anti-Nrp2 B demonstrated selective inhibitory function in vivo as well, failing to affect VEGFC induced vascular permeability.
  • Nrp2 specifically modulates migration, a process important for lymphangiogenesis, but unlikely to play a role in vascular permeability.
  • these Anti-Nrp2 B treated normal adult animals did not demonstrate any changes to intestinal lymphatics, confirming Nrp2 does not play a role in maintenance of mature lymphatics.
  • Nrp2 Inhibition Leads to a Reduction in Functional Lymphatics within the Tumor and a Reduction in Metastasis—Likely by Inhibiting Tumor Cells from Leaving the Main Tumor Mass Via the Lymphatic Route.
  • VEGFC can facilitate metastasis potentially by initiating lymphangiogenesis, thereby increasing the surface area of tumor cells in contact with LECs, by modulating LEC adhesive properties or cytokine expression or by increasing vascular permeability (Alitalo and Carmeliet, Cancer Cell 1, 219-227 (2002)).
  • Anti-Nrp2 B modulates selective VEGFC mediated functions including inhibiting VEGFC induced adult lymphangiogenesis
  • the effects of blocking Nrp2 on metastasis were investigated.
  • we picked models where blocking Nrp2 does not affect primary tumor growth and further harvested all animals at the same time-point in the study (Withers and Lee, Semin Radiat Oncol 16, 111-119 (2006)).
  • Anti-Nrp2 B treatment led to the development of short vessels and pockets of isolated healthy appearing lymphatic cells. These differences further support a model where Nrp2 does not simply act to augment VEGF receptor activation, but also brings unique functionality to mediate VEGFC biology. These results also demonstrate that for the experimental paradigms tested, Anti-Nrp2 B acts to inhibit lymphangiogenesis ( FIG. 7 ). However, it cannot be ruled out that Anti-Nrp2′ also disrupts more established lymphatic vessels within tumors.
  • the SLN is the first tissue that tumor cells encounter after departing from the tumor via the lymphatics. Thus, it represents one of the earliest steps in distant organ metastasis (Stracke and Liotta, In Vivo 6, 309-316 (1992)). As predicted, Anti-Nrp2 B treatment resulted in a delay of the development of SLN micrometastasis, consistent with the idea that fewer cells were effluxing from the primary tumor mass.
  • Nrp2 as a Metastasis Target.
  • Nrp2 expression has only been made between Nrp2 expression and malignancy, particularly in pancreatic cancer (Cohen et al., Biochem Biophys Res Commun 284, 395-403 (2001); Fukahi et al., Clin Cancer Res 10, 581-590 (2004)) and lung cancer (Kawakami et al., Cancer 95, 2196-2201 (2002); Lantuejoul et al., J Pathol 200, 336-347 (2003)).
  • Nrp2 was expressed at higher levels compared to their respective control tissues, not only in pancreatic, but also in colonic adenocarcinoma, head and neck squamous cell carcinoma, melanoma, papillary thyroid carcinoma and infiltrating ductal adenocarcinoma of the breast ( FIG. 9 ). More importantly, when these tumors were subdivided into metastatic and non-metastatic groups, Nrp2 expression was noted to be statistically higher in the metastatic group in most of these tumor types.
  • Nrp2 plays a role in modulating VEGFC driven cellular migration and provide evidence that Nrp2 may act through multiple mechanisms including enhancing VEGF receptor activation and mechanisms independent of VEGF receptor signaling. Additionally, blocking Nrp2 function using anti-Nrp2 B results in a dramatic reduction of VEGFC induced lymphangiogenesis in adult mice. This treatment also results in a reduction of metastasis, likely via a reduction in the development of functional lymphatics.
  • the invention herein includes the production and use of anti-NRP2 antibodies. Exemplary methods for generating antibodies are described in more detail in the following sections.
  • Anti-NRP2 antibodies are selected using an NRP2 antigen derived from a mammalian species.
  • the antigen is human NRP2 (hNRP2).
  • NRP2s from other species such as murine NRP2 (mNRP2) can also be used as the target antigen.
  • the NRP2 antigens from various mammalian species may be isolated from natural sources.
  • the antigen is produced recombinantly or made using other synthetic methods known in the art.
  • the antibody selected will normally have a sufficiently strong binding affinity for the NRP2 antigen.
  • the antibody may bind hNRP2 with a K d value of no more than about 5 nM, preferably no more than about 2 nM, and more preferably no more than about 500 pM.
  • Antibody affinities may be determined by a surface plasmon resonance based assay (such as the BIAcore assay as described in Examples); enzyme-linked immunoabsorbent assay (ELISA); and competition assays (e.g. RIA's), for example.
  • the antibody may be subject to other biological activity assays, e.g., in order to evaluate its effectiveness as a therapeutic.
  • biological activity assays are known in the art and depend on the target antigen and intended use for the antibody. Examples include the HUVEC inhibition assay (as described in the Examples below); tumor cell growth inhibition assays (as described in WO 89/06692, for example); antibody-dependent cellular cytotoxicity (ADCC) and complement-mediated cytotoxicity (CDC) assays (U.S. Pat. No. 5,500,362); and agonistic activity or hematopoiesis assays (see WO 95/27062).
  • HUVEC inhibition assay as described in the Examples below
  • tumor cell growth inhibition assays as described in WO 89/06692, for example
  • ADCC antibody-dependent cellular cytotoxicity
  • CDC complement-mediated cytotoxicity
  • agonistic activity or hematopoiesis assays see WO 95/27062.
  • the anti-NRP2 antibodies are selected using a unique phage display approach.
  • the approach involves generation of synthetic antibody phage libraries based on single framework template, design of sufficient diversities within variable domains, display of polypeptides having the diversified variable domains, selection of candidate antibodies with high affinity to target NRP antigen, and isolation of the selected antibodies.
  • the antibody libraries can be generated by mutating the solvent accessible and/or highly diverse positions in at least one CDR of an antibody variable domain. Some or all of the CDRs can be mutated using the methods provided herein. In some embodiments, it may be preferable to generate diverse antibody libraries by mutating positions in CDRH1, CDRH2 and CDRH3 to form a single library or by mutating positions in CDRL3 and CDRH3 to form a single library or by mutating positions in CDRL3 and CDRH1, CDRH2 and CDRH3 to form a single library.
  • a library of antibody variable domains can be generated, for example, having mutations in the solvent accessible and/or highly diverse positions of CDRH1, CDRH2 and CDRH3.
  • Another library can be generated having mutations in CDRL1, CDRL2 and CDRL3.
  • These libraries can also be used in conjunction with each other to generate binders of desired affinities. For example, after one or more rounds of selection of heavy chain libraries for binding to a target antigen, a light chain library can be replaced into the population of heavy chain binders for further rounds of selection to increase the affinity of the binders.
  • a library is created by substitution of original amino acids with variant amino acids in the CDRH3 region of the variable region of the heavy chain sequence.
  • the resulting library can contain a plurality of antibody sequences, wherein the sequence diversity is primarily in the CDRH3 region of the heavy chain sequence.
  • the library is created in the context of the humanized antibody 4D5 sequence, or the sequence of the framework amino acids of the humanized antibody 4D5 sequence.
  • the library is created by substitution of at least residues 95-100a of the heavy chain with amino acids encoded by the DVK codon set, wherein the DVK codon set is used to encode a set of variant amino acids for every one of these positions.
  • An example of an oligonucleotide set that is useful for creating these substitutions comprises the sequence (DVK) 7 .
  • a library is created by substitution of residues 95-100a with amino acids encoded by both DVK and NNK codon sets.
  • an oligonucleotide set that is useful for creating these substitutions comprises the sequence (DVK) 6 (NNK).
  • a library is created by substitution of at least residues 95-100a with amino acids encoded by both DVK and NNK codon sets.
  • An example of an oligonucleotide set that is useful for creating these substitutions comprises the sequence (DVK) 5 (NNK).
  • Another example of an oligonucleotide set that is useful for creating these substitutions comprises the sequence (NNK) 6 .
  • suitable oligonucleotide sequences can be determined by one skilled in the art according to the criteria described herein.
  • CDRH3 designs are utilized to isolate high affinity binders and to isolate binders for a variety of epitopes.
  • the range of lengths of CDRH3 generated in this library is 11 to 13 amino acids, although lengths different from this can also be generated.
  • H3 diversity can be expanded by using NNK, DVK and NVK codon sets, as well as more limited diversity at N and/or C-terminal.
  • CDRH1 and CDRH2 Diversity can also be generated in CDRH1 and CDRH2.
  • the designs of CDR-H1 and H2 diversities follow the strategy of targeting to mimic natural antibodies repertoire as described with modification that focus the diversity more closely matched to the natural diversity than previous design.
  • multiple libraries can be constructed separately with different lengths of H3 and then combined to select for binders to target antigens.
  • the multiple libraries can be pooled and sorted using solid support selection and solution sorting methods as described previously and herein below. Multiple sorting strategies may be employed. For example, one variation involves sorting on target bound to a solid, followed by sorting for a tag that may be present on the fusion polypeptide (eg. anti-gD tag) and followed by another sort on target bound to solid.
  • the libraries can be sorted first on target bound to a solid surface, the eluted binders are then sorted using solution phase binding with decreasing concentrations of target antigen. Utilizing combinations of different sorting methods provides for minimization of selection of only highly expressed sequences and provides for selection of a number of different high affinity clones.
  • High affinity binders for the target NRP2 antigen can be isolated from the libraries. Limiting diversity in the H1/H2 region decreases degeneracy about 10 4 to 10 5 fold and allowing more H3 diversity provides for more high affinity binders. Utilizing libraries with different types of diversity in CDRH3 (eg. utilizing DVK or NVT) provides for isolation of binders that may bind to different epitopes of a target antigen.
  • CDRL1 amino acid position 28 is encoded by RDT; amino acid position 29 is encoded by RKT; amino acid position 30 is encoded by RVW; amino acid position 31 is encoded by ANW; amino acid position 32 is encoded by THT; optionally, amino acid position 33 is encoded by CTG; in CDRL2: amino acid position 50 is encoded by KBG; amino acid position 53 is encoded by AVC; and optionally, amino acid position 55 is encoded by GMA; in CDRL3: amino acid position 91 is encoded by TMT or SRT or both; amino acid position 92 is encoded by DMC; amino acid position 93 is encoded by RVT; amino acid position 94 is encoded by NHT; and amino acid position 96 is encoded by TWT or YKG or both.
  • a library or libraries with diversity in CDRH1, CDRH2 and CDRH3 regions is generated.
  • diversity in CDRH3 is generated using a variety of lengths of H3 regions and using primarily codon sets XYZ and NNK or NNS.
  • Libraries can be formed using individual oligonucleotides and pooled or oligonucleotides can be pooled to form a subset of libraries.
  • the libraries of this embodiment can be sorted against target bound to solid. Clones isolated from multiple sorts can be screened for specificity and affinity using ELISA assays. For specificity, the clones can be screened against the desired target antigens as well as other nontarget antigens.
  • binders to the target NRP1 antigen can then be screened for affinity in solution binding competition ELISA assay or spot competition assay.
  • High affinity binders can be isolated from the library utilizing XYZ codon sets prepared as described above. These binders can be readily produced as antibodies or antigen binding fragments in high yield in cell culture.
  • High affinity binders isolated from the libraries of these embodiments are readily produced in bacterial and eukaryotic cell culture in high yield.
  • the vectors can be designed to readily remove sequences such as gD tags, viral coat protein component sequence, and/or to add in constant region sequences to provide for production of full length antibodies or antigen binding fragments in high yield.
  • a library with mutations in CDRH3 can be combined with a library containing variant versions of other CDRs, for example CDRL1, CDRL2, CDRL3, CDRH1 and/or CDRH2.
  • a CDRH3 library is combined with a CDRL3 library created in the context of the humanized 4D5 antibody sequence with variant amino acids at positions 28, 29, 30, 31, and/or 32 using predetermined codon sets.
  • a library with mutations to the CDRH3 can be combined with a library comprising variant CDRH1 and/or CDRH2 heavy chain variable domains.
  • the CDRH1 library is created with the humanized antibody 4D5 sequence with variant amino acids at positions 28, 30, 31, 32 and 33.
  • a CDRH2 library may be created with the sequence of humanized antibody 4D5 with variant amino acids at positions 50, 52, 53, 54, 56 and 58 using the predetermined codon sets.
  • the anti-NRP2 antibody generated from phage libraries can be further modified to generate antibody mutants with improved physical, chemical and or biological properties over the parent antibody.
  • the antibody mutant preferably has a biological activity in the assay of choice which is at least about 10 fold better, preferably at least about 20 fold better, more preferably at least about 50 fold better, and sometimes at least about 100 fold or 200 fold better, than the biological activity of the parent antibody in that assay.
  • an anti-NRP1 antibody mutant preferably has a binding affinity for NRP which is at least about 10 fold stronger, preferably at least about 20 fold stronger, more preferably at least about 50 fold stronger, and sometimes at least about 100 fold or 200 fold stronger, than the binding affinity of the parent anti-NRP antibody.
  • one or more amino acid alterations are introduced in one or more of the hypervariable regions of the parent antibody.
  • one or more alterations (e.g. substitutions) of framework region residues may be introduced in the parent antibody where these result in an improvement in the binding affinity of the antibody mutant for the antigen from the second mammalian species.
  • framework region residues to modify include those which non-covalently bind antigen directly (Amit et al. (1986) Science 233:747-753); interact with/effect the conformation of a CDR (Chothia et al. (1987) J. Mal. Biol.
  • modification of one or more of such framework region residues results in an enhancement of the binding affinity of the antibody for the antigen from the second mammalian species. For example, from about one to about five framework residues may be altered in this embodiment of the invention. Sometimes, this may be sufficient to yield an antibody mutant suitable for use in preclinical trials, even where none of the hypervariable region residues have been altered. Normally, however, the antibody mutant will comprise additional hypervariable region alteration(s).
  • hypervariable region residues which are altered may be changed randomly, especially where the starting binding affinity of the parent antibody is such that such randomly produced antibody mutants can be readily screened.
  • hypervariable region residue(s) are replaced by alanine or polyalanine residue(s) to affect the interaction of the amino acids with the antigen from the second mammalian species.
  • Those hypervariable region residue(s) demonstrating functional sensitivity to the substitutions then are refined by introducing further or other mutations at or for the sites of substitution.
  • the site for introducing an amino acid sequence variation is predetermined, the nature of the mutation per se need not be predetermined.
  • the ala-mutants produced this way are screened for their biological activity as described herein.
  • substitutions Normally one would start with a conservative substitution such as those shown below under the heading of “preferred substitutions”. If such substitutions result in a change in biological activity (e.g. binding affinity), then more substantial changes, denominated “exemplary substitutions” in the following table, or as further described below in reference to amino acid classes, are introduced and the products screened.
  • hydrophobic norleucine, met, ala, val, leu, ile
  • Non-conservative substitutions will entail exchanging a member of one of these classes for another class.
  • the sites selected for modification are affinity matured using phage display (see above).
  • Nucleic acid molecules encoding amino acid sequence mutants are prepared by a variety of methods known in the art. These methods include, but are not limited to, oligonucleotide-mediated (or site-directed) mutagenesis, PCR mutagenesis, and cassette mutagenesis of an earlier prepared mutant or a non-mutant version of the parent antibody.
  • the preferred method for making mutants is site directed mutagenesis (see, e.g., Kunkel (1985) Proc. Natl. Acad. Sci. USA 82:488).
  • the antibody mutant will only have a single hypervariable region residue substituted. In other embodiments, two or more of the hypervariable region residues of the parent antibody will have been substituted, e.g. from about two to about ten hypervariable region substitutions.
  • the antibody mutant with improved biological properties will have an amino acid sequence having at least 75% amino acid sequence identity or similarity with the amino acid sequence of either the heavy or light chain variable domain of the parent antibody, more preferably at least 80%, more preferably at least 85%, more preferably at least 90%, and most preferably at least 95%.
  • Identity or similarity with respect to this sequence is defined herein as the percentage of amino acid residues in the candidate sequence that are identical (i.e same residue) or similar (i.e. amino acid residue from the same group based on common side-chain properties, see above) with the parent antibody residues, after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percent sequence identity. None of N-terminal, C-terminal, or internal extensions, deletions, or insertions into the antibody sequence outside of the variable domain shall be construed as affecting sequence identity or similarity.
  • the biological activity of that molecule relative to the parent antibody is determined. As noted above, this may involve determining the binding affinity and/or other biological activities of the antibody.
  • a panel of antibody mutants is prepared and screened for binding affinity for the antigen such as NRP1 or a fragment thereof.
  • One or more of the antibody mutants selected from this initial screen are optionally subjected to one or more further biological activity assays to confirm that the antibody mutant(s) with enhanced binding affinity are indeed useful, e.g. for preclinical studies.
  • the antibody mutant(s) so selected may be subjected to further modifications, oftentimes depending on the intended use of the antibody. Such modifications may involve further alteration of the amino acid sequence, fusion to heterologous polypeptide(s) and/or covalent modifications such as those elaborated below. With respect to amino acid sequence alterations, exemplary modifications are elaborated above. For example, any cysteine residue not involved in maintaining the proper conformation of the antibody mutant also may be substituted, generally with serine, to improve the oxidative stability of the molecule and prevent aberrant cross linking. Conversely, cysteine bond(s) may be added to the antibody to improve its stability (particularly where the antibody is an antibody fragment such as an Fv fragment). Another type of amino acid mutant has an altered glycosylation pattern.
  • glycosylation sites may be achieved by deleting one or more carbohydrate moieties found in the antibody, and/or adding one or more glycosylation sites that are not present in the antibody.
  • Glycosylation of antibodies is typically either N-linked or O-linked.
  • N-linked refers to the attachment of the carbohydrate moiety to the side chain of an asparagine residue.
  • the tripeptide sequences asparagine-X-serine and asparagine-X-threonine, where X is any amino acid except proline, are the recognition sequences for enzymatic attachment of the carbohydrate moiety to the asparagine side chain.
  • the presence of either of these tripeptide sequences in a polypeptide creates a potential glycosylation site.
  • O-linked glycosylation refers to the attachment of one of the sugars N-aceylgalactosamine, galactose, or xylose to a hydroxyamino acid, most commonly serine or threonine, although 5-hydroxyproline or 5-hydroxylysine may also be used.
  • Addition of glycosylation sites to the antibody is conveniently accomplished by altering the amino acid sequence such that it contains one or more of the above-described tripeptide sequences (for N-linked glycosylation sites). The alteration may also be made by the addition of, or substitution by, one or more serine or threonine residues to the sequence of the original antibody (for O-linked glycosylation sites).
  • anti-Nrp2 antibodies of the invention can be produced recombinantly, using techniques and materials readily obtainable.
  • the nucleic acid encoding it is isolated and inserted into a replicable vector for further cloning (amplification of the DNA) or for expression.
  • DNA encoding the antibody is readily isolated or synthethized using conventional procedures (e.g., by using oligonucleotide probes that are capable of binding specifically to DNAs encoding the heavy and light chains of the antibody).
  • Many vectors are available.
  • the vector components generally include, but are not limited to, one or more of the following: a signal sequence, an origin of replication, one or more marker genes, an enhancer element, a promoter, and a transcription termination sequence.
  • the antibody of this invention may be produced recombinantly not only directly, but also as a fusion polypeptide with a heterologous polypeptide, which is preferably a signal sequence or other polypeptide having a specific cleavage site at the N-terminus of the mature protein or polypeptide.
  • a heterologous polypeptide which is preferably a signal sequence or other polypeptide having a specific cleavage site at the N-terminus of the mature protein or polypeptide.
  • the heterologous signal sequence selected preferably is one that is recognized and processed (i.e., cleaved by a signal peptidase) by the host cell.
  • the signal sequence is substituted by a prokaryotic signal sequence selected, for example, from the group of the alkaline phosphatase, penicillinase, Ipp, or heat-stable enterotoxin II leaders.
  • the native signal sequence may be substituted by, e.g., the yeast invertase leader, a factor leader (including Saccharomyces and Kluyveromyces ⁇ -factor leaders), or acid phosphatase leader, the C. albicans glucoamylase leader, or the signal described in WO 90/13646.
  • yeast invertase leader e.g., the yeast invertase leader, a factor leader (including Saccharomyces and Kluyveromyces ⁇ -factor leaders), or acid phosphatase leader, the C. albicans glucoamylase leader, or the signal described in WO 90/13646.
  • mammalian signal sequences as well as viral secretory leaders for example, the herpes simplex gD signal, are available.
  • the DNA for such precursor region is ligated in reading frame to DNA encoding the antibody.
  • Both expression and cloning vectors contain a nucleic acid sequence that enables the vector to replicate in one or more selected host cells.
  • this sequence is one that enables the vector to replicate independently of the host chromosomal DNA, and includes origins of replication or autonomously replicating sequences.
  • origins of replication or autonomously replicating sequences are well known for a variety of bacteria, yeast, and viruses.
  • the origin of replication from the plasmid pBR322 is suitable for most Gram-negative bacteria, the 2 ⁇ plasmid origin is suitable for yeast, and various viral origins (SV40, polyoma, adenovirus, VSV or BPV) are useful for cloning vectors in mammalian cells.
  • the origin of replication component is not needed for mammalian expression vectors (the SV40 origin may typically be used only because it contains the early promoter).
  • Selection genes may contain a selection gene, also termed a selectable marker.
  • Typical selection genes encode proteins that (a) confer resistance to antibiotics or other toxins, e.g., ampicillin, neomycin, methotrexate, or tetracycline, (b) complement auxotrophic deficiencies, or (c) supply critical nutrients not available from complex media, e.g., the gene encoding D-alanine racemase for Bacilli.
  • One example of a selection scheme utilizes a drug to arrest growth of a host cell. Those cells that are successfully transformed with a heterologous gene produce a protein conferring drug resistance and thus survive the selection regimen. Examples of such dominant selection use the drugs neomycin, mycophenolic acid and hygromycin.
  • Suitable selectable markers for mammalian cells are those that enable the identification of cells competent to take up the antibody nucleic acid, such as DHFR, thymidine kinase, metallothionein-I and -II, preferably primate metallothionein genes, adenosine deaminase, ornithine decarboxylase, etc.
  • cells transformed with the DHFR selection gene are first identified by culturing all of the transformants in a culture medium that contains methotrexate (Mtx), a competitive antagonist of DHFR.
  • Mtx methotrexate
  • An appropriate host cell when wild-type DHFR is employed is the Chinese hamster ovary (CHO) cell line deficient in DHFR activity.
  • host cells particularly wild-type hosts that contain endogenous DHFR transformed or co-transformed with DNA sequences encoding antibody, wild-type DHFR protein, and another selectable marker such as aminoglycoside 3′-phosphotransferase (APH) can be selected by cell growth in medium containing a selection agent for the selectable marker such as an aminoglycosidic antibiotic, e.g., kanamycin, neomycin, or G418. See U.S. Pat. No. 4,965,199.
  • APH aminoglycoside 3′-phosphotransferase
  • a suitable selection gene for use in yeast is the trp1 gene present in the yeast plasmid YRp7 (Stinchcomb et al. (1979) Nature 282:39).
  • the trp1 gene provides a selection marker for a mutant strain of yeast lacking the ability to grow in tryptophan, for example, ATCC No. 44076 or PEP4-1. Jones (1977) Genetics 85:12.
  • the presence of the trp1 lesion in the yeast host cell genome then provides an effective environment for detecting transformation by growth in the absence of tryptophan.
  • Leu2-deficient yeast strains (ATCC 20,622 or 38,626) are complemented by known plasmids bearing the Leu2 gene.
  • vectors derived from the 1.6 ⁇ m circular plasmid pKD1 can be used for transformation of Kluyveromyces yeasts.
  • an expression system for large-scale production of recombinant calf chymosin was reported for K. lactis . Van den Berg (1990) Bio/Technology 8:135.
  • Stable multi-copy expression vectors for secretion of mature recombinant human serum albumin by industrial strains of Kluyveromyces have also been disclosed. Fleer et al. (1991) Bio/Technology 9:968-975.
  • Expression and cloning vectors usually contain a promoter that is recognized by the host organism and is operably linked to the antibody nucleic acid.
  • Promoters suitable for use with prokaryotic hosts include the phoA promoter, ⁇ -lactamase and lactose promoter systems, alkaline phosphatase, a tryptophan (trp) promoter system, and hybrid promoters such as the tac promoter.
  • phoA promoter phoA promoter
  • ⁇ -lactamase and lactose promoter systems alkaline phosphatase
  • trp tryptophan
  • hybrid promoters such as the tac promoter.
  • Other known bacterial promoters are suitable. Promoters for use in bacterial systems also will contain a Shine-Dalgarno (S.D.) sequence operably linked to the DNA encoding the antibody.
  • S.D. Shine-Dalgarno
  • Promoter sequences are known for eukaryotes. Virtually all eukaryotic genes have an AT-rich region located approximately 25 to 30 bases upstream from the site where transcription is initiated. Another sequence found 70 to 80 bases upstream from the start of transcription of many genes is a CNCAAT region where N may be any nucleotide. At the 3′ end of most eukaryotic genes is an AATAAA sequence that may be the signal for addition of the poly A tail to the 3′ end of the coding sequence. All of these sequences are suitably inserted into eukaryotic expression vectors.
  • suitable promoting sequences for use with yeast hosts include the promoters for 3-phosphoglycerate kinase or other glycolytic enzymes, such as enolase, glyceraldehyde-3-phosphate dehydrogenase, hexokinase, pyruvate decarboxylase, phospho-fructokinase, glucose-6-phosphate isomerase, 3-phosphoglycerate mutase, pyruvate kinase, triosephosphate isomerase, phosphoglucose isomerase, and glucokinase.
  • 3-phosphoglycerate kinase or other glycolytic enzymes such as enolase, glyceraldehyde-3-phosphate dehydrogenase, hexokinase, pyruvate decarboxylase, phospho-fructokinase, glucose-6-phosphate isomerase, 3-phosphoglycerate mutase, pyruv
  • yeast promoters which are inducible promoters having the additional advantage of transcription controlled by growth conditions, are the promoter regions for alcohol dehydrogenase 2, isocytochrome C, acid phosphatase, degradative enzymes associated with nitrogen metabolism, metallothionein, glyceraldehyde-3-phosphate dehydrogenase, and enzymes responsible for maltose and galactose utilization.
  • Suitable vectors and promoters for use in yeast expression are further described in EP 73,657.
  • Yeast enhancers also are advantageously used with yeast promoters.
  • Antibody transcription from vectors in mammalian host cells is controlled, for example, by promoters obtained from the genomes of viruses such as polyoma virus, fowlpox virus, adenovirus (such as Adenovirus 2), bovine papilloma virus, avian sarcoma virus, cytomegalovirus, a retrovirus, hepatitis-B virus and most preferably Simian Virus 40 (SV40), from heterologous mammalian promoters, e.g., the actin promoter or an immunoglobulin promoter, from heat-shock promoters, provided such promoters are compatible with the host cell systems.
  • viruses such as polyoma virus, fowlpox virus, adenovirus (such as Adenovirus 2), bovine papilloma virus, avian sarcoma virus, cytomegalovirus, a retrovirus, hepatitis-B virus and most preferably Simian Virus 40 (SV40
  • the early and late promoters of the SV40 virus are conveniently obtained as an SV40 restriction fragment that also contains the SV40 viral origin of replication.
  • the immediate early promoter of the human cytomegalovirus is conveniently obtained as a HindIII E restriction fragment.
  • a system for expressing DNA in mammalian hosts using the bovine papilloma virus as a vector is disclosed in U.S. Pat. No. 4,419,446. A modification of this system is described in U.S. Pat. No. 4,601,978. See also Reyes et al. (1982) Nature 297:598-601 on expression of human ⁇ -interferon cDNA in mouse cells under the control of a thymidine kinase promoter from herpes simplex virus. Alternatively, the rous sarcoma virus long terminal repeat can be used as the promoter.
  • Enhancer sequences are now known from mammalian genes (globin, elastase, albumin, ⁇ -fetoprotein, and insulin). Typically, however, one will use an enhancer from a eukaryotic cell virus. Examples include the SV40 enhancer on the late side of the replication origin (bp 100-270), the cytomegalovirus early promoter enhancer, the polyoma enhancer on the late side of the replication origin, and adenovirus enhancers. See also Yaniv (1982) Nature 297:17-18 on enhancing elements for activation of eukaryotic promoters. The enhancer may be spliced into the vector at a position 5′ or 3′ to the antibody-encoding sequence, but is preferably located at a site 5′ from the promoter.
  • Expression vectors used in eukaryotic host cells will also contain sequences necessary for the termination of transcription and for stabilizing the mRNA. Such sequences are commonly available from the 5′ and, occasionally 3′, untranslated regions of eukaryotic or viral DNAs or cDNAs. These regions contain nucleotide segments transcribed as polyadenylated fragments in the untranslated portion of the mRNA encoding the antibody.
  • One useful transcription termination component is the bovine growth hormone polyadenylation region. See WO94/11026 and the expression vector disclosed therein.
  • Suitable host cells for cloning or expressing the DNA in the vectors herein are the prokaryote, yeast, or higher eukaryote cells described above.
  • Suitable prokaryotes for this purpose include eubacteria, such as Gram-negative or Gram-positive organisms, for example, Enterobacteriaceae such as Escherichia , e.g., E. coli, Enterobacter, Erwinia, Klebsiella, Proteus, Salmonella , e.g., Salmonella typhimurium, Serratia , e.g., Serratia marcescans , and Shigella , as well as Bacilli such as B. subtilis and B.
  • Enterobacteriaceae such as Escherichia , e.g., E. coli, Enterobacter, Erwinia, Klebsiella, Proteus
  • Salmonella e.g., Salmonella typhimurium
  • Serratia
  • E. coli cloning host is E. coli 294 (ATCC 31,446), although other strains such as E. coli B, E. coli X1776 (ATCC 31,537), and E. coli W3110 (ATCC 27,325) are suitable. These examples are illustrative rather than limiting.
  • eukaryotic microbes such as filamentous fungi or yeast are suitable cloning or expression hosts for antibody-encoding vectors.
  • Saccharomyces cerevisiae or common baker's yeast, is the most commonly used among lower eukaryotic host microorganisms.
  • a number of other genera, species, and strains are commonly available and useful herein, such as Schizosaccharomyces pombe; Kluyveromyces hosts such as, e.g., K. lactis, K. fragilis (ATCC 12,424), K. bulgaricus (ATCC 16,045), K. wickeramii (ATCC 24,178), K.
  • waltii ATCC 56,500
  • K. drosophilarum ATCC 36,906
  • K. thermotolerans K. marxianus
  • yarrowia EP 402,226
  • Pichia pastoris EP 183,070
  • Candida Trichoderma reesia
  • Neurospora crassa Schwanniomyces such as Schwanniomyces occidentalis
  • filamentous fungi such as, e.g., Neurospora, Penicillium, Tolypocladium , and Aspergillus hosts such as A. nidulans and A. niger.
  • Suitable host cells for the expression of glycosylated antibody are derived from multicellular organisms.
  • invertebrate cells include plant and insect cells.
  • Numerous baculoviral strains and variants and corresponding permissive insect host cells from hosts such as Spodoptera frugiperda (caterpillar), Aedes aegypti (mosquito), Aedes albopictus (mosquito), Drosophila melanogaster (fruitfly), and Bombyx mori have been identified.
  • a variety of viral strains for transfection are publicly available, e.g., the L-1 variant of Autographa californica NPV and the Bm-5 strain of Bombyx mori NPV, and such viruses may be used as the virus herein according to the present invention, particularly for transfection of Spodoptera frugiperda cells.
  • Plant cell cultures of cotton, corn, potato, soybean, petunia, tomato, and tobacco can also be utilized as hosts.
  • vertebrate cells have been greatest in vertebrate cells, and propagation of vertebrate cells in culture (tissue culture) has become a routine procedure.
  • useful mammalian host cell lines are monkey kidney CV1 line transformed by SV40 (COS-7, ATCC CRL 1651); human embryonic kidney line (293 or 293 cells subcloned for growth in suspension culture, Graham et al. (1977) J. Gen Virol. 36:59); baby hamster kidney cells (BHK, ATCC CCL 10); Chinese hamster ovary cells/-DHFR(CHO, Urlaub et al. (1980) Proc. Natl. Acad. Sci. USA 77:4216); mouse sertoli cells (TM4, Mather (1980) Biol. Reprod.
  • monkey kidney cells (CV1 ATCC CCL 70); African green monkey kidney cells (VERO-76, ATCC CRL-1587); human cervical carcinoma cells (HELA, ATCC CCL 2); canine kidney cells (MDCK, ATCC CCL 34); buffalo rat liver cells (BRL 3A, ATCC CRL 1442); human lung cells (W138, ATCC CCL 75); human liver cells (Hep G2, HB 8065); mouse mammary tumor (MMT 060562, ATCC CCL51); TR1 cells (Mather et al. (1982) Annals N.Y. Acad, Sci. 383:44-68); MRC 5 cells; FS4 cells; and a human hepatoma line (Hep G2).
  • Host cells are transformed with the above-described expression or cloning vectors for antibody production and cultured in conventional nutrient media modified as appropriate for inducing promoters, selecting transformants, or amplifying the genes encoding the desired sequences.
  • the host cells used to produce the antibody of this invention may be cultured in a variety of media.
  • Commercially available media such as Ham's F10 (Sigma), Minimal Essential Medium ((MEM), (Sigma), RPMI-1640 (Sigma), and Dulbecco's Modified Eagle's Medium ((DMEM), Sigma) are suitable for culturing the host cells.
  • any of these media may be supplemented as necessary with hormones and/or other growth factors (such as insulin, transferrin, or epidermal growth factor), salts (such as sodium chloride, calcium, magnesium, and phosphate), buffers (such as HEPES), nucleotides (such as adenosine and thymidine), antibiotics (such as GENTAMYCINTMdrug), trace elements (defined as inorganic compounds usually present at final concentrations in the micromolar range), and glucose or an equivalent energy source. Any other necessary supplements may also be included at appropriate concentrations that would be known to those skilled in the art.
  • the culture conditions such as temperature, pH, and the like, are those previously used with the host cell selected for expression, and will be apparent to the ordinarily skilled artisan.
  • the antibody can be produced intracellularly, in the periplasmic space, or directly secreted into the medium. It the anyway is produced intracellularly, as a first step, the particulate debris, either host cells or lysed fragments, is removed, for example, by centrifugation or ultrafiltration.
  • Carter et al. (1992) Blo/Technology 10:163-167 describe a procedure for isolating antibodies which are secreted to the periplasmic space of E. coli . Briefly, cell paste is thawed in the presence of sodium acetate (pH 3.5), EDTA, and phenylmethylsulfonylfluoride (PMSF) over about 30 min.
  • Cell debris can be removed by centrifugation.
  • supernatants from such expression systems are generally first concentrated using a commercially available protein concentration filter, for example, an Amicon or Millipore Pellicon ultrafiltration unit.
  • a protease inhibitor such as PMSF may be included in any of the foregoing steps to inhibit proteolysis and antibiotics may be included to prevent the growth of adventitious contaminants.
  • the antibody composition prepared from the cells can be purified using, for example, hydroxylapatite chromatography, gel electrophoresis, dialysis, and affinity chromatography, with affinity chromatography being the preferred purification technique.
  • affinity chromatography is the preferred purification technique.
  • the suitability of protein A as an affinity ligand depends on the species and isotype of any immunoglobulin Fc domain that is present in the antibody.
  • Protein A can be used to purify antibodies that are based on human ⁇ 1, ⁇ 2, or ⁇ 4 heavy chains (Lindmark et al. (1983) J. Immunol. Meth. 62:1-13). Protein G is recommended for all mouse isotypes and for human ⁇ 3 (Guss et al. (1986) EMBO J. 5:15671575).
  • the matrix to which the affinity ligand is attached is most often agarose, but other matrices are available.
  • Mechanically stable matrices such as controlled pore glass or poly(styrenedivinyl)benzene allow for faster flow rates and shorter processing times than can be achieved with agarose.
  • the antibody comprises a C H 3 domain
  • the Bakerbond ABXTMresin J. T. Baker, Phillipsburg, N.J.
  • the mixture comprising the antibody of interest and contaminants may be subjected to low pH hydrophobic interaction chromatography using an elution buffer at a pH between about 2.5-4.5, preferably performed at low salt concentrations (e.g., from about 0-0.25M salt).
  • Therapeutic formulations of the antibody are prepared for storage by mixing the antibody having the desired degree of purity with optional physiologically acceptable carriers, excipients or stabilizers ( Remington's Pharmaceutical Sciences 16th edition, Osol, A. Ed. (1980)), in the form of lyophilized formulations or aqueous solutions.
  • Acceptable carriers, excipients, or stabilizers are nontoxic to recipients at the dosages and concentrations employed, and include buffers such as phosphate, citrate, and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride, benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol); low molecular weight (less than about 10 residues) polypeptide; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arg
  • the formulation herein may also contain more than one active compound as necessary for the particular indication being treated, preferably those with complementary activities that do not adversely affect each other.
  • Such molecules are suitably present in combination in amounts that are effective for the purpose intended.
  • the active ingredients may also be entrapped in microcapsule prepared, for example, by coacervation techniques or by interfacial polymerization, for example, hydroxymethylcellulose or gelatin-microcapsule and poly-(methylmethacylate) microcapsule, respectively, in colloidal drug delivery systems (for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules) or in macroemulsions.
  • colloidal drug delivery systems for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules
  • the formulations to be used for in vivo administration must be sterile. This is readily accomplished by filtration through sterile filtration membranes.
  • Sustained-release preparations may be prepared. Suitable examples of sustained-release preparations include semipermeable matrices of solid hydrophobic polymers containing the antibody, which matrices are in the form of shaped articles, e.g., films, or microcapsule. Examples of sustained-release matrices include polyesters, hydrogels (for example, poly(2-hydroxyethyl-methacrylate), or poly(vinylalcohol)), polylactides (U.S. Pat. No.
  • copolymers of L-glutamic acid and ⁇ ethyl-L-glutamate copolymers of L-glutamic acid and ⁇ ethyl-L-glutamate, non-degradable ethylene-vinyl acetate, degradable lactic acid-glycolic acid copolymers such as the LUPRON DEPOTTTM (injectable microspheres composed of lactic acid-glycolic acid copolymer and leuprolide acetate), and poly-D-( ⁇ )-3-hydroxybutyric acid. While polymers such as ethylene-vinyl acetate and lactic acid-glycolic acid enable release of molecules for over 100 days, certain hydrogels release proteins for shorter time periods.
  • encapsulated antibodies When encapsulated antibodies remain in the body for a long time, they may denature or aggregate as a result of exposure to moisture at 37° C., resulting in a loss of biological activity and possible changes in immunogenicity. Rational strategies can be devised for stabilization depending on the mechanism involved. For example, if the aggregation mechanism is discovered to be intermolecular S—S bond formation through thio-disulfide interchange, stabilization may be achieved by modifying sulfhydryl residues, lyophilizing from acidic solutions, controlling moisture content, using appropriate additives, and developing specific polymer matrix compositions.
  • the antibodies of the present invention may be used to treat a mammal.
  • the antibody is administered to a nonhuman mammal for the purposes of obtaining preclinical data, for example.
  • exemplary nonhuman mammals to be treated include nonhuman primates, dogs, cats, rodents and other mammals in which preclinical studies are performed. Such mammals may be established animal models for a disease to be treated with the antibody or may be used to study toxicity of the antibody of interest. In each of these embodiments, dose escalation studies may be performed in the mammal.
  • the antibody is an anti-NRP2 antibody, it may be administered to a host rodent in a solid tumor model, for example.
  • the antibody is used to treat a human, e.g. a patient suffering from a disease or disorder who could benefit from administration of the antibody.
  • the present invention encompasses the prevention and treatment of tumoral lymphangiogenesis, the prevention and treatment of tumor metastasis and anti-angiogenic cancer therapy, a novel cancer treatment strategy aimed at inhibiting the development of tumor blood vessels required for providing nutrients to support tumor growth.
  • the invention specifically includes inhibiting the neoplastic growth of tumor at the primary site as well as preventing and/or treating metastasis of tumors at the secondary sites, therefore allowing attack of the tumors by other therapeutics.
  • Examples of cancer to be treated (including prevention) herein include, but are not limited to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia.
  • cancers include squamous cell cancer, lung cancer (including small-cell lung cancer, non-small cell lung cancer, adenocarcinoma of the lung, and squamous carcinoma of the lung), cancer of the peritoneum, hepatocellular cancer, gastric or stomach cancer (including gastrointestinal cancer), pancreatic cancer, glioblastoma, cervical cancer, ovarian cancer, liver cancer, bladder cancer, hepatoma, breast cancer, colon cancer, colorectal cancer, endometrial or uterine carcinoma, salivary gland carcinoma, kidney or renal cancer, liver cancer, prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma and various types of head and neck cancer, as well as B-cell lymphoma (including low grade/follicular non-Hodgkin's lymphoma (NHL); small lymphocytic (SL) NHL; intermediate grade/follicular NHL; intermediate grade diffuse NHL; high grade immunoblastic NHL; high grade lymphoblastic NHL; high grade small non-clea
  • cancers that are amenable to treatment by the antibodies of the invention include breast cancer, colorectal cancer, rectal cancer, non-small cell lung cancer, non-Hodgkins lymphoma (NHL), renal cell cancer, prostate cancer, liver cancer, pancreatic cancer, soft-tissue sarcoma, kaposi's sarcoma, carcinoid carcinoma, head and neck cancer, melanoma, ovarian cancer, mesothelioma, and multiple myeloma.
  • NHL non-small cell lung cancer
  • NHL non-Hodgkins lymphoma
  • renal cell cancer prostate cancer
  • liver cancer pancreatic cancer
  • soft-tissue sarcoma kaposi's sarcoma
  • carcinoid carcinoma head and neck cancer
  • melanoma ovarian cancer
  • mesothelioma mesothelioma
  • multiple myeloma multiple myeloma.
  • antibodies of the invention when used to treat various diseases such as tumors, can be combined with other therapeutic agents suitable for the same or similar diseases.
  • antibodies of the present invention may be used in combination with conventional cancer therapies, such as surgery, radiotherapy, chemotherapy or combinations thereof.
  • other therapeutic agents useful for combination cancer therapy with the antibody of the invention include other anti-angiogenic agents.
  • Many anti-angiogenic agents have been identified and are known in the arts, including those listed by Carmeliet and Jain (2000).
  • the antibody of the invention is used in combination with a VEGF antagonist or a VEGF receptor antagonist such as anti-VEGF antibodies, VEGF variants, soluble VEGF receptor fragments, aptamers capable of blocking VEGF or VEGFR, neutralizing anti-VEGFR antibodies, inhibitors of VEGFR tyrosine kinases and any combinations thereof.
  • a VEGF antagonist or a VEGF receptor antagonist such as anti-VEGF antibodies, VEGF variants, soluble VEGF receptor fragments, aptamers capable of blocking VEGF or VEGFR, neutralizing anti-VEGFR antibodies, inhibitors of VEGFR tyrosine kinases and any combinations thereof.
  • two or more anti-NRP1 antibodies may be co-administered to the patient.
  • the anti-NRP1 A or anti-NRP B antibody of the invention is used in combination with an anti-VEGF antibody to generate additive or synergistic effects.
  • Preferred anti-VEGF antibodies include those that bind to the
  • other therapeutic agents useful for combination tumor therapy with the antibody of the invention include antagonist of other factors that are involved in tumor growth, such as EGFR, ErbB2 (also known as Her2) ErbB3, ErbB4, or TNF.
  • the anti-NRP1 antibody of the invention can be used in combination with small molecule receptor tyrosine kinase inhibitors (RTKIs) that target one or more tyrosine kinase receptors such as VEGF receptors, FGF receptors, EGF receptors and PDGF receptors.
  • RTKIs small molecule receptor tyrosine kinase inhibitors
  • RTKIs are known in the art, including, but are not limited to, vatalanib (PTK787), erlotinib (TARCEVA®), OSI-7904, ZD6474 (ZACTIMA®), ZD6126 (ANG453), ZD1839, sunitinib (SUTENT®), semaxanib (SU5416), AMG706, AG013736, Imatinib (GLEEVEC®), MLN-518, CEP-701, PKC-412, Lapatinib (GSK572016), VELCADE®, AZD2171, sorafenib (NEXAVAR®), XL880, and CHIR-265.
  • PTK787 vatalanib
  • TARCEVA® erlotinib
  • OSI-7904 ZD6474
  • ZACTIMA® ZD6126
  • ANG453 ZD1839
  • sunitinib SUTENT®
  • semaxanib SU5416
  • the anti-Nrp antibody of the invention can be further used in combination with one or more chemotherapeutic agents.
  • chemotherapeutic agents may be used in the combined treatment methods of the invention.
  • An exemplary and non-limiting list of chemotherapeutic agents contemplated is provided herein under “Definition”.
  • the second therapeutic agent When the anti-Nrp antibody is co-administered with a second therapeutic agent, the second therapeutic agent may be administered first, followed by the anti-Nrp antibody. However, simultaneous administration or administration of the anti-Nrp antibody first is also contemplated. Suitable dosages for the second therapeutic agent are those presently used and may be lowered due to the combined action (synergy) of the agent and anti-Nrp antibody.
  • the appropriate dosage of antibody will depend on the type of disease to be treated, the severity and course of the disease, whether the antibody is administered for preventive or therapeutic purposes, previous therapy, the patient's clinical history and response to the antibody, and the discretion of the attending physician.
  • the antibody is suitably administered to the patient at one time or over a series of treatments.
  • the antibody of the invention is administered every two to three weeks, at a dose ranged from about 5 mg/kg to about 15 mg/kg.
  • such dosing regimen is used in combination with a chemotherapy regimen as the first line therapy for treating metastatic colorectal cancer.
  • the chemotherapy regimen involves the traditional high-dose intermittent administration.
  • the chemotherapeutic agents are administered using smaller and more frequent doses without scheduled breaks (“metronomic chemotherapy”). The progress of the therapy of the invention is easily monitored by conventional techniques and assays.
  • the antibody composition will be formulated, dosed, and administered in a fashion consistent with good medical practice.
  • Factors for consideration in this context include the particular disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of delivery of the agent, the method of administration, the scheduling of administration, and other factors known to medical practitioners.
  • the “therapeutically effective amount” of the antibody to be administered will be governed by such considerations, and is the minimum amount necessary to prevent, ameliorate, or treat a disease or disorder.
  • the antibody need not be, but is optionally formulated with one or more agents currently used to prevent or treat the disorder in question. The effective amount of such other agents depends on the amount of antibody present in the formulation, the type of disorder or treatment, and other factors discussed above.
  • alleviation or treatment of a disease or disorder involves the lessening of one or more symptoms or medical problems associated with the disease or disorder.
  • the therapeutically effective amount of the drug can accomplish one or a combination of the following: reduce the number of cancer cells; reduce the tumor size; inhibit (i.e., to decrease to some extent and/or stop) cancer cell infiltration into peripheral organs; inhibit tumor metastasis; inhibit, to some extent, tumor growth; and/or relieve to some extent one or more of the symptoms associated with the cancer.
  • a composition of this invention can be used to prevent the onset or reoccurrence of the disease or disorder in a subject or mammal.
  • Anti-Nrp2 B was isolated from human synthetic antibody phage libraries as previously described (Lee et al., J Mol Biol 340, 1073-1093 (2004)).
  • phage-displayed synthetic antibody libraries were built on a single human framework by introducing synthetic diversity at solvent-exposed positions within the heavy chain complementarity-determining regions (CDRs).
  • CDRs heavy chain complementarity-determining regions
  • Fab monovalent and bivalent antigen-binding fragment
  • the selection procedures for anti-Nrp clones consisted of various combinations of solid-supported and solution-binding sortings that are known in the art.
  • solid-supported sortings the antibody phage library was panned with target antigen coated on NUNC 96-well Maxisorp immunoplate at concentration of 5 ug/ml.
  • solution-binding sorting method phage library was incubated with decreasing concentration of biotinylated antigen in solution, which then was captured by neutravidin coated on the 96-well Maxisorp plate (2-5 ⁇ g/ml). Decreasing concentration allowed more stringency in panning to fish for tighter binders.
  • V H Library YW68.4
  • V H V L Library YW126.20
  • a series of in vitro assays were conducted to examine properties and activities of the selected novel anti-NRP antibodies, including binding affinity assays (such as BIAcore) and blocking assays (such as Semaphorin induced growth cone collapse assay and HUVEC assays).
  • the CDRs of na ⁇ ve clones were engineered to improve its affinity and stability and anti-Nrp2 antibodies YW68.4.2 and YW68.4.2.36 were generated.
  • CHO cells expressed mNrp2 (a1a2b1b2)-His, hNrp2 (a1a2b1b2)-Fc fusion protein, and insect cells expressed hNrp2 (b1b2) were used for antibody screening and characterization.
  • the V L and V H regions of anti-Nrp2 B phage antibody (originally designated YW68.4.2.36) were cloned into mammalian expression vector respectively.
  • Anti-Nrp2 B human IgG1 or mIgG2a was expressed in mammalian CHO cells and purified with protein A affinity column.
  • the amino acid sequences of anti-Nrp2 B antibodies YW68.4.2, and YW68.4.2.36 are shown in FIG. 10 .
  • the amino acid sequence of anti-Nrp2 A antibody YW126.20 is shown in FIG. 11 .
  • the alignment of the light chain variable domain sequence of anti-Nrp2 A antibody YW126.20 with human ⁇ 1 sequence is shown in FIG. 12 .
  • the alignment of anti-Nrp2 A antibody YW126.20 heavy chain variable domain sequence with human III (hum III) sequence is shown in FIG. 13 .
  • Anti-Nrp2 B antibody YW68.4.2.36 was used, which will be hereinafter referred to as Anti-Nrp2 B .
  • This antibody was targeted to the coagulation V/VII factor (b1-b2) domains of Nrp2 ( FIG. 1A ), as these domains are required for VEGFC binding to neuropilins (Karpanen et al., Faseb J 20, 1462-1472 (2006)).
  • this antibody binds with similar Affinity to murine and human Nrp2 but does not bind Nrp 1 ( FIG. 1B ).
  • anti-Nrp2 B bids exclusively to the b1-b2 domains and does nto bind t th CUB (a1-a2) domains of human Nrp2, which are primarily responsible for semaphorin binding (Chen et al., Neuron 21, 1283-1290 (1998); Giger et al., Neuron 21, 1079-1092 (1998)).
  • SRP surface plasmon resonance
  • Anti-Nrp2 B binds murine Nrp with a K d of 4.9 nM and to human Nrp2 with a K d of 5.3 nM as assessed by surface plasmon resonance measurement.
  • biotinylated VEGF 165 or VEGFC binding to LECs was carried out as previously described (Jia et al., J Biol Chem 281, 13493-13502 (2006)) and binding detected by streptavidin-alkaline phosphatase conjugates. Sema3F binding was performed as previously described (Chen et al., 1998, supra).
  • Anti-Nrp2 B strongly blocked VEGFC binding to Nrp2 ( FIG. 1C ) and HEK-293 cells transfected with full length Nrp2. As Nrp2 can also bind VEGF (Gluzman-Poltorak et al., J Biol Chem 275, 29922 (2000)), likely utilizing the same domains, the ability of anti-Nrp2 B to block VEGF 165 binding to Nrp2 was also tested. Anti-Nrp2 B also strongly blocks VEGF 165 binding to Nrp2 ( FIG. 1D ) with a similar IC 50 (0.1 nM). However, Anti-Nrp2 B was not able to block binding of Sema3F to LECs ( FIG.
  • HMVEC-dLyAd Human Dermal Lymphatic Microvascular Endothelial Cells (LECs) and HUVECS were purchased from Cambrex and cultured in EGM-2 medium (Cambrex).
  • C6 LacZ cells were purchased from ATCC.
  • 66C14 were a kind gift from Dr. Fred R Miller.
  • Tumor cells were cultured in DMEM (Gibco) supplemented with 10% FBS. All cells were maintained at 37° C. in a 5% CO 2 , 95% humidity incubator.
  • a 96-well black-clear bottom plate (VWR) was coated with 5 ⁇ g/ml Fibronectin (Invitrogen) at 37° C. for 2 hours.
  • LEC's were harvested and resuspended in assay medium (0.1% BSA, EGM-2) 3000 cells/100 ul and added to wells. Cells were incubated at 37° C. for 16 hours.
  • BrdU labeling solution Cell Proliferation ELISA kit; Roche was added and the cells were incubated for a further 24 hours at 37° C. BrdU incorporation was determined by chemiluminescence immunoassay. (6 wells per condition).
  • Nrp2 The role of Nrp2 in VEGFC mediated migration and proliferation was examined. These are key cellular activities induced by VEGFC (Joukov et al., Embo J 16, 3898-3911 (1997)). LECs have been previously shown to be highly responsive to VEGFC (Makinen et al., Embo J 20, 4762-4773 (2001); Veikkola et al., Faseb 17, 2006-2013 (2003); Whitehurst et al., Lymphat Res Biol 4, 119-142 (2006)). Using a transwell system, human LECs were introduced into the top chamber while VEGFC was added to the bottom chamber to promote migration. LECs that migrated to the bottom were then fixed, stained ( FIG. 2A ) and quantified ( FIG.
  • VEGFR3 extracellular domain protein (ECD), comprising the first three (ligand binding) Ig domains of VEGFR3 was used as a positive control to block VEGFC driven migration in this and subsequent experiments (Makinen et al., Nat Med 7, 199-205 (2001)).
  • ECD extracellular domain protein
  • Anti-Nrp2 B mAbs were added to cells in the top chamber immediately prior to the addition of VEGFC.
  • Similar results were obtained using another VEGFC responsive primary cell line, HUVECs.
  • VEGF 165 strongly induced migration in LECs as previously described (Hirakawa et al., Am J Pathol 162, 575-586 (203); Hong et al., Faseb J 18, 1111-1113 (2004); Makinen et al., Embo J 20, 4762-4773 (2001); Veikkola et al., Faseb J 17, 2006-2013 (2003)).
  • Anti-Nrp2 B Blocks VEGFC-Mediated Lymphagiogenesis In Vivo
  • mice The backs and flanks of adult C57BL6J female mice were shaved and divided into 4 teat areas. They were then injected i.v. with 150 ⁇ l 0.5% Evan's blue solution. 1 hr after the Evan's blue injection, 20 ⁇ l of PBS containing BSA or hVEGF (7.5 ⁇ g/ml) with or without antibody (0.5 mg/ml) was injected intra dermally, randomly on one of the four zones. 1 hr later, the animals were sacrificed and the skin was dissected out and imaged. Skin samples for each injection zone were cut out and incubated in formamide solution at 55° C. for 48 hrs to extract the blue dye. The absorbance of the solution was then measured with a spectrometer at 600 nm.
  • Nrp2 was required for modulating VEGFC function in vivo.
  • VEGFC mediated in vivo activities adult lymphangiogenesis and vascular permeability (Cao et al., Circ Res 94, 664-670 (2004); Joukov et al., J Biol Chem 273, 6599-6602 (1998); Kubo et al., Proc Natl Acad Sci USA 99, 8868-8873 (2002); Saaristo et al., Faseb J 16, 1041-1049 (2002)).
  • Anti-Nrp2 B Modulates VEGFC Function by Inhibiting Nrp2/VEGF Receptor Complex Formation
  • Migration assays were performed using a modified Boyden chamber with 8 ⁇ M pore size Falcon 24-multiwell insert system (BD Biosciences). The plates were coated with 5 ug/ml Fibronectin (Invitrogen) for 2 hours at 37° C. Cells in 100 ⁇ l assay medium (0.1% BSA, EGM-2) with/without antibodies were added to the upper chamber. Chemoattractant was added to the lower chamber in 500 ⁇ l assay medium, and cells were incubated at 37° C. for 16 hours. Cells on the upper membrane were removed with a sponge swab and cells on the lower surface were fixed in 70% ethanol and stained with Sytox green (Molecular Probes). Images were taken of the entire lower surface of the well, and number of migrated cells counted. (6 wells per condition).
  • Confluent LECs were incubated with control Anti-Nrp2 B antibodies (10 ⁇ g/ml) for 5 min, 2 hrs or 20 hrs at 37° C.
  • Cells were harvested with enzyme free cell dissociation buffer (Gibco), and incubated with biotinylated antibody at 1:100 in FACS buffer (PBS, 2% FBS, 2 mM EDTA, 0.1% sodium azide) containing 5% normal mouse serum, 2% normal rat serum and 10% 10 ⁇ g/ml human IgG.
  • Antibodies were biotinylated using the FluoReporter mini-biotin-xx protein labeling kit (Molecular Probes). Cells were then washed with FACS buffer and stained with streptavidin-PE (BD Biosciences). Data was analyzed with the FacsCalibur system (BD Biosciences).
  • Subconfluent LECs were pre-incubated in 100 ⁇ l Medium 199 with control or Anti-Nrp2 B antibodies (10 ⁇ g/ml) for 30 min at 37° C., then plated into NUNC maxisorp flat bottom 96-well plates (eBioscience) coated with 1 ⁇ g/ml Fibronectin (Roche) at 10,000 cells per well. Plates were centrifuged for 1 min at 140 g to synchronize contract of cells with substrate, and incubated at 37° C. for 30 min. Plates were then washed 3 times with PBS, and frozen at ⁇ 80° C. Cell density was determined with the CyQuant kit (Molecular Probes).
  • VEGFR2 activation was evaluated using total VEGFR2 and phospho-VEGFR2 ELISA assays (DuoSet IC ELISA kit, R&D).
  • VEGFR3 activation was evaluated using a kinase receptor activation assay (KIRA) with an VEGFR3-293 cell line as previously described (Sadick et al., J Pharm Biomed Anal 19, 883-891 (1999)).
  • KIRA kinase receptor activation assay
  • Anti-Nrp2 B interferes with VEGFC actions was consistent with the fact that it blocks VEGFC binding to Nrp2. In addition, the fact that it blocks only selective functions both in vitro and in vivo was highly unexpected.
  • the effect of Anti-Nrp2 B on migration induced by a number of LEC motogens was evaluated. Anti-Nrp2 B did not have any effect on migration induced by VEGF ( FIG. 2C ), HGF ( FIG. 3B ) or FGF. Therefore Anti-Nrp2 B did not generally disrupt LEC migration.
  • Anti-Nrp2 B did not have any effect on LEC adhesion to fibronectin or collagen, two extracellular matrix substrates.
  • LECs were incubated with Anti-Nrp2 B at 37° C. for 5 minutes, 2 hours or 20 hours and then performed FACS analysis with antibodies against Nrp2, VEGFR2 and VEGFR3 to determine the level of the receptors on the cell surface. No difference was observed between treatments, suggesting that Anti-Nrp2 B did not cause significant internalization of Nrp2, VEGFR2 or VEGFR3 ( FIG. 3A ).
  • VEGFR3 ECD completely blocked VEGFC mediated VEGFR2 ( FIG. 3C ; p ⁇ 0.001) and VEGFR3 phosphorylation.
  • Anti-Nrp2 B treatment resulted in a reduction of VEGFR2 ( FIG. 3C ; p ⁇ 0.001) and VEGFR3 activation, but to a significantly lesser degree than VEGFR3 ECD treatment (p ⁇ 0.001).
  • Nrp2 can be coimmunoprecipitated with VEGFR2 and VEGFR3 in the presence or absence of VEGFC (Favier et al., 2006 supra; Karpanen et al., 2006, supra) ( FIG. 3E ). This interaction was dramatically reduced by Anti-Nrp2 B ( FIG. 3E ). This result suggests that the Nrp2/VEGF receptor complex is important for specific VEGFC mediated functions. Furthermore, the role of Nrp2 is not exclusively to enhance VEGF receptor signaling in response to ligand stimulation.
  • Nrp2 is Expressed in Tumor-Associated Lymphatics
  • Nrp2 In order to determine if Nrp2 pays a role in adult lymphatic biology, the expression of Nrp2 in adult lymphatics was evaluated. Within the vascular system, Nrp2 expression has been previously described in veins and lymphatics (Herzog et al., Mech Dev 109, 115-119 (2001); Moyon et al., Development 128, 3359-3370 (2001); Yuan et al., Development 129, 4797-4806 (2002)). As described above, LEC in culture strongly express Nrp2 ( FIG. 14 ). However, we were unable to detect Nrp2 by IHC in colonic, LYVE-1 positive lymphatic vessels of normal adult mice ( FIG. 4A ; for positive control staining see FIG. 17 ).
  • Nrp2 was also observed in peri-tumoral and intra-tumoral lymphatics ( FIG. 4D ) for a number of tumor lines including 66c14, C6 and PC3 (human prostate carcinoma line). This expression was confirmed by ISH in a subset of tumor types.
  • 66C14 cells were harvested by trypsinization, washed, and resuspended in PBS at a concentration of 2 ⁇ 10 5 cells in 10 ⁇ l PBS. Mice were anesthetized using 75 mg/kg ketamine and 7.5 mg/kg xylazine, and an incision made underneath the right forelimb. 2 ⁇ 10 5 cells in 10 ⁇ l PBS was injected directly into the exposed 4 th mammary fat pad of 6-8 week old female balb-C mice. For C6, 2 ⁇ 10 6 tumor cells in 100 ⁇ l PBS were injected subcutaneously into the right flank of 6-8 week old female balb-C nude mice. For both sets of studies, tumor growth was monitored 3 times weekly.
  • mice When tumors reach an average size of 80-120 mm 3 , mice were sorted to give nearly identical group mean tumor sizes, and treatment was started. This was considered day 1 of each study. Animals were treated with control antibody (10 mg/kg), Anti-Nrp2 B (10 mg/kg) or VEGFR3 ECD 25 mg/kg IF twice weekly till study termination. All studies were repeated 3 times to ensure reproduceability.
  • SLN metastasis was evaluated by heterotopic implantation of C6 tumor cells into the ear. Briefly, a cohort of animals were pre-treated with control antibody (10 mg/kg) or Anti-Nrp2 B (10 mg/kg), one day prior to tumor cell implantation, and twice weekly thereafter. 1 ⁇ 10 5 C6 lacZ Cells were injected subdermally into the ear of 70 female balb/c nude mice. Mice were sacrificed at day 3, 6, 9, 13 and 15, and sentinel lymph nodes identified by cutaneous lymphangiography and subsequently dissected out. Lymph nodes were homogenized and lysate assayed for ⁇ -galactosidase activity (Pierce).
  • Intradermal lymphangiography was performed on control and tumor bearing mice as follows. 2 ⁇ l of evans blue dye (3% by weight) containing 1% 20 nm polystyrene fluorescent microbeads (Molecular Probes) was injected intradermally at the apex of the tumor. Animals were allowed to recover for 2 hours and then sacrificed. Tumors were dissected out with care to not include peritumoral tissue. They were either fixed and then histochemically analyzed or incubated in formamide to extract evans blue and quantified with a OD600 measurement by spectrophotometer.
  • Lungs were immersed in 10% NBF for 24 hours, then immersed in a 20% solution of an iodine-based x-ray computed tomography contrast agent, Isovue370 (Bracco Diagnostics Inc, Princeton, N.J.), was diluted with PBS for 24 hours. Lungs were then immersed in and perfused via the trachea cannula with 20 mls of soy bean oil (Sigma-Aldrich, St. Louis, Mo.) at a rate of 0.25 mL/min. The soy bean oil was used to remove excess contrast agent and provide a background media for imaging.
  • soy bean oil Sigma-Aldrich, St. Louis, Mo.
  • mice were imaged ex-vivo with a VivaCT (SCANCO Medical, Basserdorf, Switzerland) x-ray micro-computed tomography (micro-CT) system.
  • a sagittal scout image comparable with a conventional planar x-ray, was obtained to define the start and end point for the axial acquisition of a series of micro-CT image slices. The location and number of axial images were chosen to provide complete coverage of the lung.
  • the lungs were immersed in soybean oil as the background media.
  • the micro-CT images were generated by operating the x-ray tube at an energy level of 45 kV, a current of 160 ⁇ A and an integration time of 450 milliseconds.
  • Axial images were obtained at an isotropic resolution of 21 ⁇ m.
  • the lung tumor estimates were obtained by an semi-automated image analysis algorithm that includes an inspection step by a trained reader.
  • Lung tumors appear as a hyper-intense solid mass relative to porous, mesh-like structures of the normal lung. This is due to the absorption of the iodine contrast agent by solid structures (bronchial and aveloi walls, tumors, trachea, medial steinum) contained within the lung, Excess contrast agent was cleared from the filled air spaces by the oil perfusion step. Potential tumor masses were extracted by a series of image processing steps. The image analysis software was developed in-house.
  • the region growing step requires a minimum volume of 2300 connected voxels (greater than 0.0231 mm 3 ) to be accepted as an object (mass).
  • the identified objects were then evaluated by a trained reader with the Analyze 3D visualization software. Individual objects were accepted or rejected as possible tumors based on the appearance of the object and its location within the lung. Objects were rejected if they reside outside the lung (ex. mediasteinum, extraneous tissue debris) or resemble a blood-filled vessel. The tumor count, individual tumor volume and total tumor volume were determined for each lung. This analytic technique was validated with a well-established tumor metastasis model.
  • 66c14 is a murine mammary adenocarcinoma line derived from a spontaneous mammary tumor in a Balb/c mouse (Aslakson and Miller, Cancer Res 52, 1399-1405 (1992)). These cells express VEGFC and metastasize via the lymphatic system to the lungs (Aslakson and Miller, 1992, supra). Orthotopic transplantation of these cells in Balb/c mice resulted in reproducible development of tumors and lung metastasis. Anti-Nrp2 B treatment did not affect the primary growth rate of the tumors ( FIG. 5A ). As VEGFR3 ECD did dramatically reduce primary tumor growth rates it was excluded from any further analysis of metastasis.
  • Nrp2 but not VEGFR2 or VEGFR3 was expressed on 66c14 tumor cells. This raised the possibility that treatment with Anti-Nrp2 B was affecting tumor cell behavior directly to impact metastasis. This was unlikely given the lack of effect on primary tumor growth with Anti-Nrp2 B treatment. Additionally, Anti-Nrp2 B did not have any effect on tumor cell proliferation, apoptosis or migration in vitro. However, to address the possibility that the reduction in metastasis was due to effects of Anti-Nrp2 B on tumor cells, we also evaluated the effect of Anti-Nrp2 B on the C6 rat glioblastoma model.

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Cited By (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11072787B2 (en) 2013-03-15 2021-07-27 Atyr Pharma Inc. Histidyl-tRNA synthetase-Fc conjugates
US11505610B2 (en) 2018-04-06 2022-11-22 Atyr Pharma, Inc. Compositions and methods comprising anti-NRP2 antibodies
US11767520B2 (en) 2017-04-20 2023-09-26 Atyr Pharma, Inc. Compositions and methods for treating lung inflammation
US11807687B2 (en) 2019-10-03 2023-11-07 Atyr Pharma, Inc. Therapeutic compositions comprising anti-NRP2 antibodies

Families Citing this family (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2162552A4 (fr) * 2007-05-11 2010-06-30 Univ Johns Hopkins Biomarqueurs pour mélanomes
EP2488874A4 (fr) * 2009-10-13 2013-08-14 Univ Johns Hopkins Biomarqueur d'identification de cellules tumorales de mélanome
US10174385B2 (en) 2013-12-20 2019-01-08 Trustees Of Boston University Assays and methods relating to the treatment of melanoma
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CN114262683B (zh) * 2022-03-01 2022-06-17 中国科学院动物研究所 一种表达vegfr3 d2多肽的细菌制剂及其构建方法和应用

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1998045331A2 (fr) 1997-04-07 1998-10-15 Genentech, Inc. Anticorps anti-vegf
WO1998045332A2 (fr) 1997-04-07 1998-10-15 Genentech, Inc. Anticorps humanises et methode permettant de les produire
WO1999029729A2 (fr) * 1997-12-09 1999-06-17 Children's Medical Center Corporation Fonction et utilisation de l'antagoniste du recepteur de la neuropiline
EP0817648B1 (fr) 1995-03-30 2004-12-22 Genentech, Inc. Antagonistes de facteurs de croissance des cellules endotheliales vasculaires
US7994286B2 (en) * 2005-11-08 2011-08-09 Genentech, Inc. Neuropilin antagonists

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1999029858A1 (fr) 1997-12-09 1999-06-17 Children's Medical Center Corporation Inhibiteurs solubles du facteur de croissance de l'endothelium vasculaire et leurs utilisations
US6417169B1 (en) * 1998-04-23 2002-07-09 Genesense Technologies Inc. Insulin-like growth factor II antisense oligonucleotide sequences and methods of using same to inhibit cell growth
US20030113324A1 (en) * 2001-10-01 2003-06-19 Kari Alitalo Neuropilin/VEGF-C/VEGFR-3 materials and methods
EP1513879B1 (fr) 2002-06-03 2018-08-22 Genentech, Inc. Bibliotheques de phages et anticorps synthetiques
EP1439192A1 (fr) * 2003-01-15 2004-07-21 Xerion Pharmaceuticals AG Inhibiteurs de neuropilin-1
CN1886149A (zh) 2003-09-23 2006-12-27 路德维格癌症研究院 Vegf-c或vegf-d物质及刺激神经干细胞的方法

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP0817648B1 (fr) 1995-03-30 2004-12-22 Genentech, Inc. Antagonistes de facteurs de croissance des cellules endotheliales vasculaires
WO1998045331A2 (fr) 1997-04-07 1998-10-15 Genentech, Inc. Anticorps anti-vegf
WO1998045332A2 (fr) 1997-04-07 1998-10-15 Genentech, Inc. Anticorps humanises et methode permettant de les produire
WO1999029729A2 (fr) * 1997-12-09 1999-06-17 Children's Medical Center Corporation Fonction et utilisation de l'antagoniste du recepteur de la neuropiline
US7994286B2 (en) * 2005-11-08 2011-08-09 Genentech, Inc. Neuropilin antagonists

Non-Patent Citations (46)

* Cited by examiner, † Cited by third party
Title
Achen et al., Br J Cancer 94 (2006), 1355-1360.
Adamis et al., Arch. Ophthalmol. 114:66-71 (1996).
Bielenberg et al., J Clin Invest 114, 1260-1271 (2004).
Boon (Adv. Can. Res. 1992 58:177-210). *
Borgstrom et al., Cancer Res. 56:4032-4039 (1996).
Brown et al (J. Immunol. May 1996; 156(9):3285-3291. *
Casset et al. (2003) BBRC 307, 198-205. *
Chen et al., Cancer Res 65, 9004-9011 (2005).
Essell (J. NIH Res. 1995 7:46. *
Favier et al., Blood 108, 1243-1250 (2006).
Ferrara et al., Nat Med 9, 669-676 (2003).
Folkman et al., Nature 339:58 (1989).
Folkman et al.. J. Biol. Chem., 267:10931-10934 (1992).
Folkman Nat Med 1(1):27-31 (1995).
Garner A., "Vascular diseases", In: Pathobiology of Ocular Disease. A Dynamic Approach, Garner A., Klintworth GK, eds., 2nd Edition (Marcel Dekker, NY, 1994), pp. 1625-1710.
He et al., J. Natl Cancer Inst, vol. 94, No. 11, pp. 819-825, (2002).
Heldin, "Dimerzation of cell surface receptors in signal transduction", Cell vol. 80, pp. 213-223, (1995).
Karpanen et al.. Faseb Journal, 20, pp. 1462-1472, (2001).
Kim et al. Nature vol. 362, pp. 841-844 (1993).
Klagsbrun et al., Annu. Rev. Physiol, 53:217-239 (1991).
Krishnan et al., Cancer Res 63, 713-722 (2003).
Liang et al., J11401 Biol 366, 815-829 (2007).
Liang et al., JBiol Chem 281, 951-961 (2006).
Macchiarini et al., Lancet 340:145-146 (1992).
Mandriota et al., EMBO J 20, 672-682 (2001).
Massague, Cell 127, 679-695 (2006).
Melnyk et al., Cancer Res. 56:921-924 (1996).
Murga et al., Blood 105, 1992-1999 (2005).
Nathanson, Cancer 98,413-423 (2003).
Pan et al., Cancer Cell 11, 53-67 (2007).
Pascalis et al (The Journal of Immunology (2002) 169, 3076-3084). *
Paul, Fundamental Immunology, 3rd Edition, 1993, pp. 292-295. *
Rudikoff et al(Proc. Natl. Acad. Sci. USA 1982 vol. 79: p. 1979). *
Shinkai et al., J Biol Chem 273, 31283-31288 (1998).
Skobe et al., Nat Med 7, 192-198 (2001).
Soker et al., J Cell Biochem 85, 357-368 (2002).
Spitler (Cancer Biotherapy, 1995, 10:1-3). *
Stacker et al., Faseb J 16, 922-934 (2002).
Stacker et al., Nat Rev Cancer 2, 573-583 (2002).
Takashima et al., Proc Natl Acad Sci USA 99, 3657-3662 (2002).
Vajdos et al (J. Mol. Biol., Jul. 5, 2002;320(2); 415-428. *
Waltenberger et al., J. Biol Chem 269, 26988-26995 (1994)).
Wang et al., JBiol Chem 278, 48848-48860 (2003).
Warren et al., J. Clin. Invest. 95:1789-1797 (1995.
Weidner et al., N. Engl Med 324:1-6 (1991).
Yuan et al.. Development 129, 4797-4806 (2002).

Cited By (4)

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US11072787B2 (en) 2013-03-15 2021-07-27 Atyr Pharma Inc. Histidyl-tRNA synthetase-Fc conjugates
US11767520B2 (en) 2017-04-20 2023-09-26 Atyr Pharma, Inc. Compositions and methods for treating lung inflammation
US11505610B2 (en) 2018-04-06 2022-11-22 Atyr Pharma, Inc. Compositions and methods comprising anti-NRP2 antibodies
US11807687B2 (en) 2019-10-03 2023-11-07 Atyr Pharma, Inc. Therapeutic compositions comprising anti-NRP2 antibodies

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