RU2015112578A - Локусы fad3 для выполнения операций и соответствующие связывающиеся со специфическими сайтами-мишенями белки, способные к вызову направленных разрывов - Google Patents
Локусы fad3 для выполнения операций и соответствующие связывающиеся со специфическими сайтами-мишенями белки, способные к вызову направленных разрывов Download PDFInfo
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Abstract
1. Способ модификации генома клетки, включающий: расщепление, сайт-специфическим образом, сайта-мишени в гене FAD3 в клетке с созданием, таким образом, разрыва в гене FAD3; причем ген FAD3 подвергается модификации после разрыва.2. Способ по п. 1, причем способ, кроме того, включает интеграцию в разрыв представляющей интерес последовательности нуклеиновой кислоты.3. Способ по п. 1 или 2, причем геном FAD3 является ген FAD3A, FAD3A′, FAD3A′′, FAD3C, FAD3C′′ и/или FAD3C′.4. Способ по п. 1 или 2, причем расщепление сайт-специфическим образом включает введение составного белка, включающего ДНК-связывающий домен и расщепляющий домен или полдомена для расщепления, в клетку или полинуклеотида, кодирующего составной белок, причем составной белок связывается со специфичностью в отношении сайта-мишени и расщепляет в и вблизи сайте(а)-мишени с созданием таким образом разрыва.5. Способ по п. 4, причем ДНК-связывающий домен выбирают из группы, состоящей из ДНК-связывающего домена мегануклеазы, ДНК-связывающего домена «лейциновая молния», ДНК-связывающего домена подобного активатору транскрипции белка (TAL), РНК-направляемой системы CRISPR-Cas9, рекомбиназы, ДНК-связывающего домена белка с цинковыми пальцами и химерных комбинаций любых из вышеизложенных доменов.6. Способ по п. 4, причем расщепляющий домен или полдомена для расщепления выбирают из группы, состоящей из полдомена для расщепления из эндонуклеазы рестрикции типа IIS, полдомена для расщепления из эндонуклеазы FokI, полдомена для расщепления из эндонуклеазы StsI и хоминг-нуклеазы.7. Способ по п. 4, причем составным белком является нуклеаза на основе цинковых пальцев.8. Способ по п. 7, причем нуклеаза на основе цинковых пальцев включает от трех до шести доменов «цинковые пальцы», при этом
Claims (21)
1. Способ модификации генома клетки, включающий: расщепление, сайт-специфическим образом, сайта-мишени в гене FAD3 в клетке с созданием, таким образом, разрыва в гене FAD3; причем ген FAD3 подвергается модификации после разрыва.
2. Способ по п. 1, причем способ, кроме того, включает интеграцию в разрыв представляющей интерес последовательности нуклеиновой кислоты.
3. Способ по п. 1 или 2, причем геном FAD3 является ген FAD3A, FAD3A′, FAD3A′′, FAD3C, FAD3C′′ и/или FAD3C′.
4. Способ по п. 1 или 2, причем расщепление сайт-специфическим образом включает введение составного белка, включающего ДНК-связывающий домен и расщепляющий домен или полдомена для расщепления, в клетку или полинуклеотида, кодирующего составной белок, причем составной белок связывается со специфичностью в отношении сайта-мишени и расщепляет в и вблизи сайте(а)-мишени с созданием таким образом разрыва.
5. Способ по п. 4, причем ДНК-связывающий домен выбирают из группы, состоящей из ДНК-связывающего домена мегануклеазы, ДНК-связывающего домена «лейциновая молния», ДНК-связывающего домена подобного активатору транскрипции белка (TAL), РНК-направляемой системы CRISPR-Cas9, рекомбиназы, ДНК-связывающего домена белка с цинковыми пальцами и химерных комбинаций любых из вышеизложенных доменов.
6. Способ по п. 4, причем расщепляющий домен или полдомена для расщепления выбирают из группы, состоящей из полдомена для расщепления из эндонуклеазы рестрикции типа IIS, полдомена для расщепления из эндонуклеазы FokI, полдомена для расщепления из эндонуклеазы StsI и хоминг-нуклеазы.
7. Способ по п. 4, причем составным белком является нуклеаза на основе цинковых пальцев.
8. Способ по п. 7, причем нуклеаза на основе цинковых пальцев включает от трех до шести доменов «цинковые пальцы», при этом каждый домен «цинковые пальцы» включает распознающий спиральный участок, причем белок с цинковыми пальцами включает распознающие спиральные участки, упорядоченные и продемонстрированные в одном ряду таблицы 3.
9. Способ по п. 1 или 2, причем расщепление сайт-специфическим образом является специфическим в отношении некоторых, но не всех копий FAD3A, FAD3A′, FAD3A′′, FAD3C, FAD3C′ и/или FAD3C′.
10. Способ по п. 1 или 2, причем сайт-мишень выбирают из группы, состоящей из SEQ ID NO: 20-23, SEQ ID NO: 25-38, SEQ ID NO: 40-45, SEQ ID NO: 47 и SEQ ID NO: 49.
11. Способ по п. 1 или 2, причем клеткой является клетка растения, грибов, бактерий или водорослей.
12. Способ по п. 11, причем клеткой растения является клетка однодольного растения или клетка двудольного растения.
13. Способ по п. 12, причем растение выбирают из группы, состоящей из Brassica sp., Brassica napus, Brassica rapa, Brassica juencea, Brassica oleracea, Brassica nigra, Zea sp., Zea mays, Glycine sp., Glycine max, Triticum sp., Triticum aestivum, Oryza sp., Oryza sativa, Triticae sp., Triticae triticum, Heliantheas sp., Heliantheas helianthus, Gossypium sp., Gossypium hirsutum и Hordeum vulgar.
14. Способ по п. 2, причем представляющую интерес последовательность нуклеиновой кислоты выбирают из группы, состоящей из последовательности, включающей сайт-мишень для связывания ДНК-связывающего домена, одного или более генов устойчивости к инсектицидам, одного или более генов устойчивости к гербицидам, одного или более генов эффективности потребления азота, одного или более генов эффективности потребления воды, одного или более генов пищевой ценности, одного или более генов ДНК-связывающих белков, одного или более генов селектируемых маркеров и их комбинации.
15. Клетка, семя или растение, включающее клетку, модифицированную(ая) в соответствии со способом по любому из пп. 1-14.
16. Клетка, семя или растение по п. 15, причем клеткой, семенем или растением является трансгенная(ое) клетка, семя или растение, включающая(ее) представляющую интерес нуклеотидную последовательность, интегрированную в одну или более копий гена FAD3A, FAD3A′, FAD3A′′, FAD3C, FAD3C′′ и/или FAD3C′.
17. Клетка, семя или растение по п. 16, причем нуклеотидная последовательность является гетерологичной или гомологичной по отношению к клетке.
18. Клетка, семя или растение по п. 17, причем гомологичная последовательность включает по меньшей мере один однонуклеотидный полиморфизм.
19. Клетка, семя или растение по п. 16 или 17, причем последовательность нуклеиновой кислоты интегрируется в или вблизи сайте(а)-мишени, выбираемого из группы, состоящей из SEQ ID NO: 20-23, SEQ ID NO: 25-38, SEQ ID NO: 40-45, SEQ ID NO: 47 и SEQ ID NO: 49.
20. Сайт-специфическая нуклеаза на основе цинковых пальцев, которая расщепляет в или вблизи сайте(а)-мишени нуклеиновой кислоты, выбираемого из группы, состоящей из SEQ ID NO: 20-23, SEQ ID NO: 25-38, SEQ ID NO: 40-45, SEQ ID NO: 47 и SEQ ID NO: 49.
21. Нуклеаза на основе цинковых пальцев по п. 20, причем нуклеаза на основе цинковых пальцев включает от трех до шести доменов «цинковые пальцы», при этом каждый домен «цинковые пальцы» включает распознающий спиральный участок, причем белок с цинковыми пальцами включает распознающие спиральные участки, упорядоченные и продемонстрированные в одном ряду таблицы 3.
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US201261697854P | 2012-09-07 | 2012-09-07 | |
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US201361820260P | 2013-05-07 | 2013-05-07 | |
US61/820,260 | 2013-05-07 | ||
PCT/US2013/058267 WO2014039684A1 (en) | 2012-09-07 | 2013-09-05 | Fad3 performance loci and corresponding target site specific binding proteins capable of inducing targeted breaks |
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RU2769284C2 (ru) * | 2017-07-10 | 2022-03-30 | Дюммен Груп Б.В. | Роза, устойчивая к мучнистой росе |
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