NO326359B1 - Fremgangsmate ved pavisning av forskjellige nukleotidsekvenser i en enkelt prove samt sett for utforelse av fremgangsmaten - Google Patents
Fremgangsmate ved pavisning av forskjellige nukleotidsekvenser i en enkelt prove samt sett for utforelse av fremgangsmaten Download PDFInfo
- Publication number
- NO326359B1 NO326359B1 NO20004962A NO20004962A NO326359B1 NO 326359 B1 NO326359 B1 NO 326359B1 NO 20004962 A NO20004962 A NO 20004962A NO 20004962 A NO20004962 A NO 20004962A NO 326359 B1 NO326359 B1 NO 326359B1
- Authority
- NO
- Norway
- Prior art keywords
- target
- sequence
- nucleic acid
- labeled
- oligonucleotide
- Prior art date
Links
- 238000000034 method Methods 0.000 title claims abstract description 89
- 108091028043 Nucleic acid sequence Proteins 0.000 title claims description 15
- 238000001514 detection method Methods 0.000 claims abstract description 77
- 150000007523 nucleic acids Chemical class 0.000 claims abstract description 75
- 108020004707 nucleic acids Proteins 0.000 claims abstract description 70
- 102000039446 nucleic acids Human genes 0.000 claims abstract description 70
- 238000002372 labelling Methods 0.000 claims abstract description 63
- 108020005187 Oligonucleotide Probes Proteins 0.000 claims abstract description 51
- 239000002751 oligonucleotide probe Substances 0.000 claims abstract description 51
- 239000002773 nucleotide Substances 0.000 claims abstract description 46
- 125000003729 nucleotide group Chemical group 0.000 claims abstract description 44
- 230000000295 complement effect Effects 0.000 claims abstract description 39
- 108091034117 Oligonucleotide Proteins 0.000 claims abstract description 31
- 238000009396 hybridization Methods 0.000 claims abstract description 22
- 230000027455 binding Effects 0.000 claims abstract description 16
- 239000000523 sample Substances 0.000 claims description 93
- 238000006243 chemical reaction Methods 0.000 claims description 43
- 239000000463 material Substances 0.000 claims description 34
- 239000003550 marker Substances 0.000 claims description 25
- 241000192700 Cyanobacteria Species 0.000 claims description 17
- 239000012528 membrane Substances 0.000 claims description 15
- 241000894006 Bacteria Species 0.000 claims description 11
- 239000005546 dideoxynucleotide Substances 0.000 claims description 11
- 239000007787 solid Substances 0.000 claims description 9
- 238000004925 denaturation Methods 0.000 claims description 3
- 230000036425 denaturation Effects 0.000 claims description 3
- 239000002253 acid Substances 0.000 claims 1
- 238000012207 quantitative assay Methods 0.000 abstract description 5
- 230000002906 microbiologic effect Effects 0.000 abstract description 2
- 238000012205 qualitative assay Methods 0.000 abstract 1
- 108020004414 DNA Proteins 0.000 description 61
- 238000003556 assay Methods 0.000 description 47
- 210000004027 cell Anatomy 0.000 description 47
- 230000003321 amplification Effects 0.000 description 35
- 238000003199 nucleic acid amplification method Methods 0.000 description 35
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 31
- 239000002585 base Substances 0.000 description 21
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 18
- 238000010348 incorporation Methods 0.000 description 14
- 239000011324 bead Substances 0.000 description 13
- 230000002860 competitive effect Effects 0.000 description 13
- 239000000047 product Substances 0.000 description 13
- 239000013077 target material Substances 0.000 description 13
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 12
- 125000004122 cyclic group Chemical group 0.000 description 12
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 description 11
- 238000000746 purification Methods 0.000 description 11
- QKNYBSVHEMOAJP-UHFFFAOYSA-N 2-amino-2-(hydroxymethyl)propane-1,3-diol;hydron;chloride Chemical compound Cl.OCC(N)(CO)CO QKNYBSVHEMOAJP-UHFFFAOYSA-N 0.000 description 10
- 241000192701 Microcystis Species 0.000 description 10
- 230000007613 environmental effect Effects 0.000 description 10
- 238000011534 incubation Methods 0.000 description 10
- 238000000926 separation method Methods 0.000 description 10
- 239000007790 solid phase Substances 0.000 description 10
- 238000004458 analytical method Methods 0.000 description 9
- 238000010790 dilution Methods 0.000 description 9
- 239000012895 dilution Substances 0.000 description 9
- 238000011002 quantification Methods 0.000 description 9
- 108091093088 Amplicon Proteins 0.000 description 8
- 241000192542 Anabaena Species 0.000 description 8
- 102000004190 Enzymes Human genes 0.000 description 7
- 108090000790 Enzymes Proteins 0.000 description 7
- 150000001875 compounds Chemical class 0.000 description 7
- 108020004999 messenger RNA Proteins 0.000 description 7
- 238000012544 monitoring process Methods 0.000 description 7
- 238000002360 preparation method Methods 0.000 description 7
- 241000894007 species Species 0.000 description 7
- 239000003053 toxin Substances 0.000 description 7
- 231100000765 toxin Toxicity 0.000 description 7
- 108700012359 toxins Proteins 0.000 description 7
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 6
- 108020004465 16S ribosomal RNA Proteins 0.000 description 6
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 description 6
- 238000000338 in vitro Methods 0.000 description 6
- 230000035945 sensitivity Effects 0.000 description 6
- 239000011780 sodium chloride Substances 0.000 description 6
- 235000011178 triphosphate Nutrition 0.000 description 6
- 239000001226 triphosphate Substances 0.000 description 6
- 241000192710 Microcystis aeruginosa Species 0.000 description 5
- 102000004160 Phosphoric Monoester Hydrolases Human genes 0.000 description 5
- 108090000608 Phosphoric Monoester Hydrolases Proteins 0.000 description 5
- 230000001580 bacterial effect Effects 0.000 description 5
- 239000000872 buffer Substances 0.000 description 5
- 230000001419 dependent effect Effects 0.000 description 5
- 230000000694 effects Effects 0.000 description 5
- 230000035772 mutation Effects 0.000 description 5
- 241000192660 Aphanizomenon Species 0.000 description 4
- 239000002028 Biomass Substances 0.000 description 4
- ZRALSGWEFCBTJO-UHFFFAOYSA-N Guanidine Chemical compound NC(N)=N ZRALSGWEFCBTJO-UHFFFAOYSA-N 0.000 description 4
- 102100034343 Integrase Human genes 0.000 description 4
- 241000107857 Microcystis aeruginosa PCC 7005 Species 0.000 description 4
- 108010092799 RNA-directed DNA polymerase Proteins 0.000 description 4
- 108010058966 bacteriophage T7 induced DNA polymerase Proteins 0.000 description 4
- 238000011161 development Methods 0.000 description 4
- 238000001502 gel electrophoresis Methods 0.000 description 4
- 238000012252 genetic analysis Methods 0.000 description 4
- 238000010438 heat treatment Methods 0.000 description 4
- 102000054765 polymorphisms of proteins Human genes 0.000 description 4
- 239000011541 reaction mixture Substances 0.000 description 4
- 239000000243 solution Substances 0.000 description 4
- OAKPWEUQDVLTCN-NKWVEPMBSA-N 2',3'-Dideoxyadenosine-5-triphosphate Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@H]1CC[C@@H](CO[P@@](O)(=O)O[P@](O)(=O)OP(O)(O)=O)O1 OAKPWEUQDVLTCN-NKWVEPMBSA-N 0.000 description 3
- 238000012408 PCR amplification Methods 0.000 description 3
- 241000530613 Pseudanabaena limnetica Species 0.000 description 3
- 238000000246 agarose gel electrophoresis Methods 0.000 description 3
- 238000013459 approach Methods 0.000 description 3
- 239000002299 complementary DNA Substances 0.000 description 3
- URGJWIFLBWJRMF-JGVFFNPUSA-N ddTTP Chemical compound O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)CC1 URGJWIFLBWJRMF-JGVFFNPUSA-N 0.000 description 3
- GNBHRKFJIUUOQI-UHFFFAOYSA-N fluorescein Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC=C(O)C=C1OC1=CC(O)=CC=C21 GNBHRKFJIUUOQI-UHFFFAOYSA-N 0.000 description 3
- 235000013305 food Nutrition 0.000 description 3
- 239000012634 fragment Substances 0.000 description 3
- 230000036541 health Effects 0.000 description 3
- 230000005291 magnetic effect Effects 0.000 description 3
- 239000000203 mixture Substances 0.000 description 3
- 238000007837 multiplex assay Methods 0.000 description 3
- 108090000623 proteins and genes Proteins 0.000 description 3
- 230000002829 reductive effect Effects 0.000 description 3
- 238000011160 research Methods 0.000 description 3
- 238000012360 testing method Methods 0.000 description 3
- 125000002264 triphosphate group Chemical class [H]OP(=O)(O[H])OP(=O)(O[H])OP(=O)(O[H])O* 0.000 description 3
- UNXRWKVEANCORM-UHFFFAOYSA-N triphosphoric acid Chemical compound OP(O)(=O)OP(O)(=O)OP(O)(O)=O UNXRWKVEANCORM-UHFFFAOYSA-N 0.000 description 3
- 239000003643 water by type Substances 0.000 description 3
- 102000002260 Alkaline Phosphatase Human genes 0.000 description 2
- 108020004774 Alkaline Phosphatase Proteins 0.000 description 2
- USFZMSVCRYTOJT-UHFFFAOYSA-N Ammonium acetate Chemical compound N.CC(O)=O USFZMSVCRYTOJT-UHFFFAOYSA-N 0.000 description 2
- 239000005695 Ammonium acetate Substances 0.000 description 2
- 241001316054 Aphanizomenon gracile NIVA-CYA 103 Species 0.000 description 2
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 2
- 241000191358 Chlorobium sp. Species 0.000 description 2
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 2
- 241000195493 Cryptophyta Species 0.000 description 2
- 108010014303 DNA-directed DNA polymerase Proteins 0.000 description 2
- 102000016928 DNA-directed DNA polymerase Human genes 0.000 description 2
- 241000238557 Decapoda Species 0.000 description 2
- TWRXJAOTZQYOKJ-UHFFFAOYSA-L Magnesium chloride Chemical compound [Mg+2].[Cl-].[Cl-] TWRXJAOTZQYOKJ-UHFFFAOYSA-L 0.000 description 2
- CHJJGSNFBQVOTG-UHFFFAOYSA-N N-methyl-guanidine Natural products CNC(N)=N CHJJGSNFBQVOTG-UHFFFAOYSA-N 0.000 description 2
- 241000192656 Nostoc Species 0.000 description 2
- 241000192673 Nostoc sp. Species 0.000 description 2
- ISWSIDIOOBJBQZ-UHFFFAOYSA-N Phenol Chemical compound OC1=CC=CC=C1 ISWSIDIOOBJBQZ-UHFFFAOYSA-N 0.000 description 2
- 241000192605 Phormidium sp. Species 0.000 description 2
- 241000530769 Planktothrix Species 0.000 description 2
- 241000048846 Planktothrix agardhii NIVA-CYA 29 Species 0.000 description 2
- 108020001027 Ribosomal DNA Proteins 0.000 description 2
- BQCADISMDOOEFD-UHFFFAOYSA-N Silver Chemical compound [Ag] BQCADISMDOOEFD-UHFFFAOYSA-N 0.000 description 2
- 229920004890 Triton X-100 Polymers 0.000 description 2
- 239000013504 Triton X-100 Substances 0.000 description 2
- ISAKRJDGNUQOIC-UHFFFAOYSA-N Uracil Chemical compound O=C1C=CNC(=O)N1 ISAKRJDGNUQOIC-UHFFFAOYSA-N 0.000 description 2
- 239000011543 agarose gel Substances 0.000 description 2
- 229940043376 ammonium acetate Drugs 0.000 description 2
- 235000019257 ammonium acetate Nutrition 0.000 description 2
- 239000007864 aqueous solution Substances 0.000 description 2
- 230000008901 benefit Effects 0.000 description 2
- 230000001351 cycling effect Effects 0.000 description 2
- 238000012217 deletion Methods 0.000 description 2
- 230000037430 deletion Effects 0.000 description 2
- 229960000633 dextran sulfate Drugs 0.000 description 2
- 238000003745 diagnosis Methods 0.000 description 2
- 239000013024 dilution buffer Substances 0.000 description 2
- SWSQBOPZIKWTGO-UHFFFAOYSA-N dimethylaminoamidine Natural products CN(C)C(N)=N SWSQBOPZIKWTGO-UHFFFAOYSA-N 0.000 description 2
- 238000009826 distribution Methods 0.000 description 2
- 239000003651 drinking water Substances 0.000 description 2
- 235000020188 drinking water Nutrition 0.000 description 2
- ZMMJGEGLRURXTF-UHFFFAOYSA-N ethidium bromide Chemical compound [Br-].C12=CC(N)=CC=C2C2=CC=C(N)C=C2[N+](CC)=C1C1=CC=CC=C1 ZMMJGEGLRURXTF-UHFFFAOYSA-N 0.000 description 2
- 229960005542 ethidium bromide Drugs 0.000 description 2
- 238000002474 experimental method Methods 0.000 description 2
- 239000000499 gel Substances 0.000 description 2
- 230000002068 genetic effect Effects 0.000 description 2
- 239000011521 glass Substances 0.000 description 2
- UYTPUPDQBNUYGX-UHFFFAOYSA-N guanine Chemical group O=C1NC(N)=NC2=C1N=CN2 UYTPUPDQBNUYGX-UHFFFAOYSA-N 0.000 description 2
- 231100000334 hepatotoxic Toxicity 0.000 description 2
- 230000003082 hepatotoxic effect Effects 0.000 description 2
- 238000005286 illumination Methods 0.000 description 2
- 230000003100 immobilizing effect Effects 0.000 description 2
- 238000003780 insertion Methods 0.000 description 2
- 230000037431 insertion Effects 0.000 description 2
- 238000002955 isolation Methods 0.000 description 2
- 238000007834 ligase chain reaction Methods 0.000 description 2
- 239000012139 lysis buffer Substances 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 244000005700 microbiome Species 0.000 description 2
- 238000000386 microscopy Methods 0.000 description 2
- 230000005298 paramagnetic effect Effects 0.000 description 2
- 244000052769 pathogen Species 0.000 description 2
- 239000008188 pellet Substances 0.000 description 2
- 239000011535 reaction buffer Substances 0.000 description 2
- 238000005070 sampling Methods 0.000 description 2
- 229940016590 sarkosyl Drugs 0.000 description 2
- 108700004121 sarkosyl Proteins 0.000 description 2
- 229920006395 saturated elastomer Polymers 0.000 description 2
- 238000012163 sequencing technique Methods 0.000 description 2
- -1 sheets Substances 0.000 description 2
- 229910052709 silver Inorganic materials 0.000 description 2
- 239000004332 silver Substances 0.000 description 2
- 235000020183 skimmed milk Nutrition 0.000 description 2
- KSAVQLQVUXSOCR-UHFFFAOYSA-M sodium lauroyl sarcosinate Chemical compound [Na+].CCCCCCCCCCCC(=O)N(C)CC([O-])=O KSAVQLQVUXSOCR-UHFFFAOYSA-M 0.000 description 2
- 238000003786 synthesis reaction Methods 0.000 description 2
- RWQNBRDOKXIBIV-UHFFFAOYSA-N thymine Chemical compound CC1=CNC(=O)NC1=O RWQNBRDOKXIBIV-UHFFFAOYSA-N 0.000 description 2
- 238000004448 titration Methods 0.000 description 2
- 231100000331 toxic Toxicity 0.000 description 2
- 230000002588 toxic effect Effects 0.000 description 2
- 238000003260 vortexing Methods 0.000 description 2
- GFFGJBXGBJISGV-UHFFFAOYSA-N Adenine Chemical compound NC1=NC=NC2=C1N=CN2 GFFGJBXGBJISGV-UHFFFAOYSA-N 0.000 description 1
- 229930024421 Adenine Natural products 0.000 description 1
- 241001479434 Agfa Species 0.000 description 1
- 108700028369 Alleles Proteins 0.000 description 1
- 241000191366 Chlorobium Species 0.000 description 1
- 108020004635 Complementary DNA Proteins 0.000 description 1
- 241001464430 Cyanobacterium Species 0.000 description 1
- 108010017826 DNA Polymerase I Proteins 0.000 description 1
- 102000004594 DNA Polymerase I Human genes 0.000 description 1
- 230000004544 DNA amplification Effects 0.000 description 1
- 238000007399 DNA isolation Methods 0.000 description 1
- 238000000018 DNA microarray Methods 0.000 description 1
- 238000001712 DNA sequencing Methods 0.000 description 1
- 241000531083 Dolichospermum lemmermannii Species 0.000 description 1
- 241000196324 Embryophyta Species 0.000 description 1
- 206010067125 Liver injury Diseases 0.000 description 1
- 241001465754 Metazoa Species 0.000 description 1
- 108010049746 Microcystins Proteins 0.000 description 1
- 241001316831 Microcystis aeruginosa NIVA-CYA 143 Species 0.000 description 1
- 241000610595 Microcystis cf. aeruginosa NIVA-CYA 144 Species 0.000 description 1
- 238000002944 PCR assay Methods 0.000 description 1
- 241000192524 Planktothrix agardhii Species 0.000 description 1
- 241000530778 Planktothrix prolifica Species 0.000 description 1
- 238000011529 RT qPCR Methods 0.000 description 1
- 108010006785 Taq Polymerase Proteins 0.000 description 1
- ARLKCWCREKRROD-POYBYMJQSA-N [[(2s,5r)-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate Chemical compound O=C1N=C(N)C=CN1[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)CC1 ARLKCWCREKRROD-POYBYMJQSA-N 0.000 description 1
- 230000002159 abnormal effect Effects 0.000 description 1
- 231100000570 acute poisoning Toxicity 0.000 description 1
- 229960000643 adenine Drugs 0.000 description 1
- 238000001042 affinity chromatography Methods 0.000 description 1
- 238000001261 affinity purification Methods 0.000 description 1
- 238000013019 agitation Methods 0.000 description 1
- 239000003513 alkali Substances 0.000 description 1
- 230000009833 antibody interaction Effects 0.000 description 1
- 238000003491 array Methods 0.000 description 1
- 230000009286 beneficial effect Effects 0.000 description 1
- 230000015572 biosynthetic process Effects 0.000 description 1
- 238000010804 cDNA synthesis Methods 0.000 description 1
- 230000000711 cancerogenic effect Effects 0.000 description 1
- 231100000315 carcinogenic Toxicity 0.000 description 1
- 230000006037 cell lysis Effects 0.000 description 1
- 238000012512 characterization method Methods 0.000 description 1
- 239000007795 chemical reaction product Substances 0.000 description 1
- 210000003763 chloroplast Anatomy 0.000 description 1
- 239000013611 chromosomal DNA Substances 0.000 description 1
- 238000010367 cloning Methods 0.000 description 1
- 239000000356 contaminant Substances 0.000 description 1
- 230000002596 correlated effect Effects 0.000 description 1
- 230000000875 corresponding effect Effects 0.000 description 1
- 230000002380 cytological effect Effects 0.000 description 1
- OPTASPLRGRRNAP-UHFFFAOYSA-N cytosine Chemical group NC=1C=CNC(=O)N=1 OPTASPLRGRRNAP-UHFFFAOYSA-N 0.000 description 1
- 238000013461 design Methods 0.000 description 1
- 230000014670 detection of bacterium Effects 0.000 description 1
- 230000004069 differentiation Effects 0.000 description 1
- BFMYDTVEBKDAKJ-UHFFFAOYSA-L disodium;(2',7'-dibromo-3',6'-dioxido-3-oxospiro[2-benzofuran-1,9'-xanthene]-4'-yl)mercury;hydrate Chemical compound O.[Na+].[Na+].O1C(=O)C2=CC=CC=C2C21C1=CC(Br)=C([O-])C([Hg])=C1OC1=C2C=C(Br)C([O-])=C1 BFMYDTVEBKDAKJ-UHFFFAOYSA-L 0.000 description 1
- 238000001962 electrophoresis Methods 0.000 description 1
- 238000005516 engineering process Methods 0.000 description 1
- 230000002255 enzymatic effect Effects 0.000 description 1
- 238000011156 evaluation Methods 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 230000002349 favourable effect Effects 0.000 description 1
- 239000000835 fiber Substances 0.000 description 1
- 238000001914 filtration Methods 0.000 description 1
- 231100000234 hepatic damage Toxicity 0.000 description 1
- 210000001990 heterocyst Anatomy 0.000 description 1
- 231100000086 high toxicity Toxicity 0.000 description 1
- 238000001727 in vivo Methods 0.000 description 1
- 238000011065 in-situ storage Methods 0.000 description 1
- 208000015181 infectious disease Diseases 0.000 description 1
- 238000011835 investigation Methods 0.000 description 1
- 238000005304 joining Methods 0.000 description 1
- 230000008818 liver damage Effects 0.000 description 1
- 230000007774 longterm Effects 0.000 description 1
- 230000002934 lysing effect Effects 0.000 description 1
- 229910001629 magnesium chloride Inorganic materials 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 238000002844 melting Methods 0.000 description 1
- 230000008018 melting Effects 0.000 description 1
- 238000002493 microarray Methods 0.000 description 1
- 230000000813 microbial effect Effects 0.000 description 1
- 238000007431 microscopic evaluation Methods 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 230000000877 morphologic effect Effects 0.000 description 1
- 230000009871 nonspecific binding Effects 0.000 description 1
- 238000002966 oligonucleotide array Methods 0.000 description 1
- 230000036961 partial effect Effects 0.000 description 1
- 239000002245 particle Substances 0.000 description 1
- 230000001717 pathogenic effect Effects 0.000 description 1
- 125000002467 phosphate group Chemical group [H]OP(=O)(O[H])O[*] 0.000 description 1
- 239000013612 plasmid Substances 0.000 description 1
- 210000002706 plastid Anatomy 0.000 description 1
- 238000006116 polymerization reaction Methods 0.000 description 1
- 230000003389 potentiating effect Effects 0.000 description 1
- 238000001556 precipitation Methods 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 239000013014 purified material Substances 0.000 description 1
- 238000004445 quantitative analysis Methods 0.000 description 1
- 230000002285 radioactive effect Effects 0.000 description 1
- 238000011897 real-time detection Methods 0.000 description 1
- 238000005215 recombination Methods 0.000 description 1
- 230000006798 recombination Effects 0.000 description 1
- 108020004418 ribosomal RNA Proteins 0.000 description 1
- 238000007363 ring formation reaction Methods 0.000 description 1
- 235000014102 seafood Nutrition 0.000 description 1
- 238000010532 solid phase synthesis reaction Methods 0.000 description 1
- 238000001228 spectrum Methods 0.000 description 1
- 238000010561 standard procedure Methods 0.000 description 1
- 239000008223 sterile water Substances 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 238000005382 thermal cycling Methods 0.000 description 1
- 229940113082 thymine Drugs 0.000 description 1
- 210000001519 tissue Anatomy 0.000 description 1
- 231100000041 toxicology testing Toxicity 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- 239000000717 tumor promoter Substances 0.000 description 1
- 238000011144 upstream manufacturing Methods 0.000 description 1
- 229940035893 uracil Drugs 0.000 description 1
- 238000010200 validation analysis Methods 0.000 description 1
- 238000012795 verification Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6851—Quantitative amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Analytical Chemistry (AREA)
- Microbiology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Physics & Mathematics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Saccharide Compounds (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| GBGB9807045.1A GB9807045D0 (en) | 1998-04-01 | 1998-04-01 | Nucleic acid detection method |
| PCT/GB1999/001025 WO1999050448A2 (en) | 1998-04-01 | 1999-04-01 | Nucleic acid detection method |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| NO20004962D0 NO20004962D0 (no) | 2000-10-02 |
| NO20004962L NO20004962L (no) | 2000-12-01 |
| NO326359B1 true NO326359B1 (no) | 2008-11-17 |
Family
ID=10829712
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| NO20004962A NO326359B1 (no) | 1998-04-01 | 2000-10-02 | Fremgangsmate ved pavisning av forskjellige nukleotidsekvenser i en enkelt prove samt sett for utforelse av fremgangsmaten |
Country Status (11)
| Country | Link |
|---|---|
| US (2) | US6617138B1 (ja) |
| EP (1) | EP1068352B1 (ja) |
| JP (1) | JP4481491B2 (ja) |
| CN (1) | CN100381576C (ja) |
| AT (1) | ATE377091T1 (ja) |
| AU (1) | AU769566B2 (ja) |
| CA (1) | CA2325052C (ja) |
| DE (1) | DE69937447T2 (ja) |
| GB (1) | GB9807045D0 (ja) |
| NO (1) | NO326359B1 (ja) |
| WO (1) | WO1999050448A2 (ja) |
Families Citing this family (26)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DE10012540B4 (de) * | 2000-03-15 | 2004-09-23 | Vermicon Ag | Oligonukleotide und Verfahren zum spezifischen Nachweis von Mikroorganismen durch Polymerase-Kettenreaktion |
| US7732138B2 (en) * | 2001-11-07 | 2010-06-08 | Diagcor Bioscience Incorporation Limited | Rapid genotyping analysis and the device thereof |
| JP4602338B2 (ja) * | 2003-05-17 | 2010-12-22 | デピュー インターナショナル リミテッド | 髄内釘アセンブリ |
| FI20030771A (fi) * | 2003-05-21 | 2004-11-22 | Helsingin Yliopisto | Menetelmä toksisten syanobakteerien määrittämiseksi |
| US7338763B2 (en) | 2004-06-02 | 2008-03-04 | Eppendorf Array Technologies S.A. | Method and kit for the detection and/or quantification of homologous nucleotide sequences on arrays |
| EP1776482A2 (en) | 2004-06-30 | 2007-04-25 | Applera Corporation | Log-linear amplification |
| FR2873388B1 (fr) * | 2004-07-23 | 2012-04-06 | Biomerieux Sa | Procede de marquage et de purification d'acides nucleiques d'interet presents dans un echantillon biologique a traiter dans un unique recipient reactionnel |
| US7767394B2 (en) * | 2005-02-09 | 2010-08-03 | Pacific Biosciences Of California, Inc. | Nucleotide compositions and uses thereof |
| US8008066B2 (en) | 2005-03-10 | 2011-08-30 | Gen-Probe Incorporated | System for performing multi-formatted assays |
| EP1888766B1 (en) * | 2005-05-31 | 2013-03-27 | Newsouth Innovations Pty Limited | Detection of hepatotoxic cyanobacteria |
| BRPI0913781A2 (pt) * | 2008-10-01 | 2015-10-20 | Koninkl Philips Electronics Nv | "método para teste de ácidos nucléicos em um suporte, kit para teste de ácidos nucléicos em um suporte, uso de um oligonucleotídeo marcado complementar a um trecho de nucleotídeos de um tipo único de base para teste da condição de ácidos nucléicos imobilizados em um suporte sólido através de ligação cruzada por calor ou luz ou através de imobilização química e método para análise de ácidos nucléicos" |
| GB2475226A (en) | 2009-11-03 | 2011-05-18 | Genetic Analysis As | Universal Prokaryote 16S ribosome PCR primer pair |
| US9046507B2 (en) | 2010-07-29 | 2015-06-02 | Gen-Probe Incorporated | Method, system and apparatus for incorporating capacitive proximity sensing in an automated fluid transfer procedure |
| GB201021397D0 (en) | 2010-12-16 | 2011-01-26 | Genetic Analysis As | Diagnosis of Crohn's disease |
| GB201021399D0 (en) | 2010-12-16 | 2011-01-26 | Genetic Analysis As | Oligonucleotide probe set and methods of microbiota profiling |
| GB201102693D0 (en) | 2011-02-16 | 2011-03-30 | Genetic Analysis As | Method for identifying neonates at risk for necrotizing enterocolitis |
| US8718948B2 (en) | 2011-02-24 | 2014-05-06 | Gen-Probe Incorporated | Systems and methods for distinguishing optical signals of different modulation frequencies in an optical signal detector |
| GB201110712D0 (en) | 2011-06-23 | 2011-08-10 | Univ Ulster | Diagnostic methods |
| DE102012204366B4 (de) * | 2011-12-16 | 2017-07-27 | Siemens Aktiengesellschaft | Verfahren und Kit zur Identifizierung und Quantifizierung von einer einzelsträngigen Ziel-Nukleinsäure |
| GB201501603D0 (en) * | 2015-01-30 | 2015-03-18 | Norwegian University Of Life Sciences And Hedmark University College | Method and product |
| CN107287291B (zh) * | 2017-06-02 | 2021-01-05 | 华南师范大学 | 一种基于g-C3N4与CdTe/CdS量子点相互作用的双标记核酸检测方法 |
| US10871485B2 (en) | 2018-04-13 | 2020-12-22 | Rarecyte, Inc. | Kits for labeling of biomarkers and methods of using the same |
| KR20210125532A (ko) * | 2019-02-08 | 2021-10-18 | 보드 오브 리전츠, 더 유니버시티 오브 텍사스 시스템 | 진단 및 치료 목적을 위한 엑소좀 관련 마이크로바이옴의 단리 및 검출 |
| CN110878298B (zh) * | 2019-11-22 | 2023-09-15 | 深圳市易基因科技有限公司 | rRNA捕获探针及其应用 |
| CA3233615A1 (en) | 2021-10-04 | 2023-04-13 | Age Labs As | Screening method for rheumatoid arthritis |
| WO2024008955A1 (en) | 2022-07-08 | 2024-01-11 | Age Labs As | Method of screening for severe covid-19 susceptibility |
Family Cites Families (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5710028A (en) * | 1992-07-02 | 1998-01-20 | Eyal; Nurit | Method of quick screening and identification of specific DNA sequences by single nucleotide primer extension and kits therefor |
| JPH07509136A (ja) * | 1992-07-17 | 1995-10-12 | バイシス，インク． | インサイチュ（ｉｎ ｓｉｔｕ）・ハイブリダイゼーションのための母体血液中の胎児細胞の富化と同定 |
| AU5298393A (en) * | 1992-10-08 | 1994-05-09 | Regents Of The University Of California, The | Pcr assays to determine the presence and concentration of a target |
| EP0892856B1 (en) * | 1996-03-01 | 2005-11-09 | E.I. Du Pont De Nemours And Company | A method for the amplification and detection of a nucleic acid fragment of interest |
| DE19612684A1 (de) * | 1996-03-29 | 1997-10-02 | Gsf Forschungszentrum Umwelt | Neue Verwendung extrem thermophiler DNA-Polymerasen |
-
1998
- 1998-04-01 GB GBGB9807045.1A patent/GB9807045D0/en not_active Ceased
-
1999
- 1999-04-01 JP JP2000541335A patent/JP4481491B2/ja not_active Expired - Lifetime
- 1999-04-01 AT AT99914659T patent/ATE377091T1/de not_active IP Right Cessation
- 1999-04-01 CN CNB998048712A patent/CN100381576C/zh not_active Expired - Lifetime
- 1999-04-01 EP EP99914659A patent/EP1068352B1/en not_active Expired - Lifetime
- 1999-04-01 US US09/646,847 patent/US6617138B1/en not_active Expired - Lifetime
- 1999-04-01 AU AU33389/99A patent/AU769566B2/en not_active Ceased
- 1999-04-01 WO PCT/GB1999/001025 patent/WO1999050448A2/en active IP Right Grant
- 1999-04-01 DE DE69937447T patent/DE69937447T2/de not_active Expired - Lifetime
- 1999-04-01 CA CA2325052A patent/CA2325052C/en not_active Expired - Lifetime
-
2000
- 2000-10-02 NO NO20004962A patent/NO326359B1/no not_active IP Right Cessation
-
2003
- 2003-09-09 US US10/658,100 patent/US20040197794A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| EP1068352A2 (en) | 2001-01-17 |
| US6617138B1 (en) | 2003-09-09 |
| DE69937447D1 (de) | 2007-12-13 |
| AU3338999A (en) | 1999-10-18 |
| JP4481491B2 (ja) | 2010-06-16 |
| EP1068352B1 (en) | 2007-10-31 |
| NO20004962L (no) | 2000-12-01 |
| DE69937447T2 (de) | 2008-08-21 |
| JP2003516710A (ja) | 2003-05-20 |
| WO1999050448A2 (en) | 1999-10-07 |
| GB9807045D0 (en) | 1998-06-03 |
| CA2325052C (en) | 2011-08-02 |
| AU769566B2 (en) | 2004-01-29 |
| NO20004962D0 (no) | 2000-10-02 |
| CN100381576C (zh) | 2008-04-16 |
| US20040197794A1 (en) | 2004-10-07 |
| CA2325052A1 (en) | 1999-10-07 |
| CN1308685A (zh) | 2001-08-15 |
| WO1999050448A3 (en) | 1999-12-02 |
| ATE377091T1 (de) | 2007-11-15 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| CA2325052C (en) | Nucleic acid detection method | |
| Lee et al. | Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR | |
| McKillip et al. | Real-time nucleic acid–based detection methods for pathogenic bacteria in food | |
| EP0610396B1 (en) | Fingerprinting bacterial strains using repetitive dna sequence amplification | |
| Lee et al. | Development and application of an oligonucleotide microarray and real-time quantitative PCR for detection of wastewater bacterial pathogens | |
| RU2010144789A (ru) | Процесс и способ мониторинга желудочно-кишечной микрофлоры | |
| WO2008041354A1 (fr) | DÉTECTION DE BACTÉRIES PAR L'UTILISATION DU GÈNE DnaJ ET UTILISATION DU PROCÉDÉ | |
| WO2011082325A2 (en) | Sequences of e.coli 055:h7 genome | |
| Mianzhi et al. | Contemporary nucleic acid-based molecular techniques for detection, identification, and characterization of Bifidobacterium | |
| Lee et al. | Identification and characterization of simple sequence repeat markers for Pythium aphanidermatum, P. cryptoirregulare, and P. irregulare and the potential use in Pythium population genetics | |
| US20100112563A1 (en) | Multiplex analysis of nucleic acids | |
| US10513741B2 (en) | Compositions and methods for detection of Mycobacterium avium paratuberculosis | |
| JP2007174973A (ja) | Ｓｓｒプライマーを用いるマルチプレックスｐｃｒによる品種識別法。 | |
| WO2010055868A1 (ja) | ゲオスミチア（Ｇｅｏｓｍｉｔｈｉａ）属に属する菌類の検出方法 | |
| Knight | Molecular genetic methods for detection and identification of viable but nonculturable microorganisms | |
| Lübeck et al. | PCR technology and applications to zoonotic food-borne bacterial pathogens | |
| JPH10210980A (ja) | 乳酸菌検出用オリゴヌクレオチド及び該菌の検出方法 | |
| EP2839025A1 (en) | Compositions and methods for detection of microorganisms of the mycobacterium avium complex excluding mycobacterium avium paratuberculosis | |
| JP5873356B2 (ja) | モニリエラ属真菌の検出方法 | |
| US7276358B1 (en) | Rapid quantification of butyric acid-producing bacteria using real-time PCR | |
| KR101686434B1 (ko) | 벼 흰잎마름병균 hb01014 균주 및 이의 진단용 조성물 | |
| KR101603728B1 (ko) | 벼 흰잎마름병 진단용 조성물 | |
| Denman et al. | RAPD, RFLP, T-RFLP, AFLP, RISA | |
| Stephensen Lübeck et al. | PCR Technology and Applications to Zoonotic Food-Borne Bacterial Pathogens | |
| Kumar et al. | Characterization of Plant Pathogens through PCR |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| MM1K | Lapsed by not paying the annual fees |