KR20080052585A - 올리고뉴클레오티드 디자인 및/또는 핵산 탐지 방법및/또는 장치 - Google Patents

올리고뉴클레오티드 디자인 및/또는 핵산 탐지 방법및/또는 장치 Download PDF

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KR20080052585A
KR20080052585A KR1020087006089A KR20087006089A KR20080052585A KR 20080052585 A KR20080052585 A KR 20080052585A KR 1020087006089 A KR1020087006089 A KR 1020087006089A KR 20087006089 A KR20087006089 A KR 20087006089A KR 20080052585 A KR20080052585 A KR 20080052585A
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South Korea
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nucleic acid
target nucleic
oligonucleotide
probe
probes
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KR1020087006089A
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Korean (ko)
Inventor
크리스토퍼 윙 청 웡
윙 킨 성
찰리 리
랜스 데이비드 밀러
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에이전시 포 사이언스, 테크놀로지 앤드 리서치
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Publication of KR20080052585A publication Critical patent/KR20080052585A/ko
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B99/00—Subject matter not provided for in other groups of this subclass
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6811—Selection methods for production or design of target specific oligonucleotides or binding molecules
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation

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  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
KR1020087006089A 2005-08-12 2006-08-08 올리고뉴클레오티드 디자인 및/또는 핵산 탐지 방법및/또는 장치 Ceased KR20080052585A (ko)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US11/202,023 US20070042388A1 (en) 2005-08-12 2005-08-12 Method of probe design and/or of nucleic acids detection
US11/202,023 2005-08-12

Publications (1)

Publication Number Publication Date
KR20080052585A true KR20080052585A (ko) 2008-06-11

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Family Applications (1)

Application Number Title Priority Date Filing Date
KR1020087006089A Ceased KR20080052585A (ko) 2005-08-12 2006-08-08 올리고뉴클레오티드 디자인 및/또는 핵산 탐지 방법및/또는 장치

Country Status (7)

Country Link
US (3) US20070042388A1 (https=)
EP (1) EP1922418A4 (https=)
JP (1) JP2009504153A (https=)
KR (1) KR20080052585A (https=)
CN (1) CN101292044B (https=)
AU (1) AU2006280489B2 (https=)
WO (1) WO2007021250A2 (https=)

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR102020614B1 (ko) * 2018-09-11 2019-09-11 한국과학기술정보연구원 결핵 진단용 프라이머 세트 및 이의 용도
WO2020054906A1 (ko) * 2018-09-11 2020-03-19 한국과학기술정보연구원 목표 유전자를 검출하기 위한 프라이머의 설계 방법

Families Citing this family (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR101138864B1 (ko) * 2005-03-08 2012-05-14 삼성전자주식회사 프라이머 및 프로브 세트를 설계하는 방법, 그에 의하여 설계된 프라이머 및 프로브 세트, 상기 세트를 포함하는 키트, 상기 방법을 컴퓨터가 수행할 수 있도록 하는 프로그램을기록한 컴퓨터 판독가능한 매체 및 상기 세트를 이용한 표적 서열의 동정 방법
US20070042388A1 (en) * 2005-08-12 2007-02-22 Wong Christopher W Method of probe design and/or of nucleic acids detection
US20100159533A1 (en) * 2008-11-24 2010-06-24 Helicos Biosciences Corporation Simplified sample preparation for rna analysis
US20120264637A1 (en) * 2009-06-26 2012-10-18 The Regents Of The University Of California Methods and systems for phylogenetic analysis
US20110152109A1 (en) * 2009-12-21 2011-06-23 Gardner Shea N Biological sample target classification, detection and selection methods, and related arrays and oligonucleotide probes
WO2012173636A1 (en) * 2011-06-16 2012-12-20 University Of Rochester Hiv incidence assays with high sensitivity and specificity
CA2872468C (en) * 2012-05-08 2020-10-27 Adaptive Biotechnologies Corporation Compositions and methods for measuring and calibrating amplification bias in multiplexed pcr reactions
CN105780129B (zh) * 2014-12-15 2019-06-11 天津华大基因科技有限公司 目标区域测序文库构建方法
US11319602B2 (en) 2017-02-07 2022-05-03 Tcm Biotech Internationl Corp. Probe combination for detection of cancer
US10787699B2 (en) * 2017-02-08 2020-09-29 Microsoft Technology Licensing, Llc Generating pluralities of primer and payload designs for retrieval of stored nucleotides
JP6995604B2 (ja) * 2017-12-15 2022-01-14 東洋鋼鈑株式会社 一塩基多型検出用プローブの設計方法及びプローブセット
CN109097450B (zh) * 2018-08-30 2022-05-13 江苏省疾病预防控制中心 一种核酸序列非依赖的全rna扩增方法
CN115101128B (zh) * 2022-06-29 2023-09-15 纳昂达(南京)生物科技有限公司 一种杂交捕获探针脱靶危险性评估的方法

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2000194554A (ja) * 1998-12-25 2000-07-14 Nec Corp 演算処理装置
US20030096986A1 (en) * 2001-10-25 2003-05-22 Affymetrix, Incorporated Methods and computer software products for selecting nucleic acid probes
GB2377017A (en) 2001-06-28 2002-12-31 Animal Health Inst Detection of foot and mouth disease virus
EP1542009B1 (en) * 2002-08-12 2009-11-25 Hitachi High-Technologies Corporation Method of detecting nucleic acid by using dna microarrays and nucleic acid detection apparatus
US20040259124A1 (en) * 2003-02-19 2004-12-23 Affymetrix, Inc. Methods for oligonucleotide probe design
US20070042388A1 (en) * 2005-08-12 2007-02-22 Wong Christopher W Method of probe design and/or of nucleic acids detection

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR102020614B1 (ko) * 2018-09-11 2019-09-11 한국과학기술정보연구원 결핵 진단용 프라이머 세트 및 이의 용도
WO2020054906A1 (ko) * 2018-09-11 2020-03-19 한국과학기술정보연구원 목표 유전자를 검출하기 위한 프라이머의 설계 방법

Also Published As

Publication number Publication date
EP1922418A2 (en) 2008-05-21
US20120309643A1 (en) 2012-12-06
AU2006280489B2 (en) 2012-05-24
US8234079B2 (en) 2012-07-31
JP2009504153A (ja) 2009-02-05
WO2007021250A2 (en) 2007-02-22
CN101292044B (zh) 2012-11-07
CN101292044A (zh) 2008-10-22
US20090053708A1 (en) 2009-02-26
AU2006280489A1 (en) 2007-02-22
WO2007021250A3 (en) 2007-07-05
US20070042388A1 (en) 2007-02-22
EP1922418A4 (en) 2010-02-03

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