KR102671480B1 - 올리고뉴클레오타이드 인코딩된 화학적 라이브러리 - Google Patents
올리고뉴클레오타이드 인코딩된 화학적 라이브러리 Download PDFInfo
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- KR102671480B1 KR102671480B1 KR1020207012104A KR20207012104A KR102671480B1 KR 102671480 B1 KR102671480 B1 KR 102671480B1 KR 1020207012104 A KR1020207012104 A KR 1020207012104A KR 20207012104 A KR20207012104 A KR 20207012104A KR 102671480 B1 KR102671480 B1 KR 102671480B1
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/508—Rigid containers without fluid transport within
- B01L3/5085—Rigid containers without fluid transport within for multiple samples, e.g. microtitration plates
- B01L3/50853—Rigid containers without fluid transport within for multiple samples, e.g. microtitration plates with covers or lids
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1065—Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1068—Template (nucleic acid) mediated chemical library synthesis, e.g. chemical and enzymatical DNA-templated organic molecule synthesis, libraries prepared by non ribosomal polypeptide synthesis [NRPS], DNA/RNA-polymerase mediated polypeptide synthesis
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1075—Isolating an individual clone by screening libraries by coupling phenotype to genotype, not provided for in other groups of this subclass
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
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- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B30/00—Methods of screening libraries
- C40B30/04—Methods of screening libraries by measuring the ability to specifically bind a target molecule, e.g. antibody-antigen binding, receptor-ligand binding
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- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B30/00—Methods of screening libraries
- C40B30/06—Methods of screening libraries by measuring effects on living organisms, tissues or cells
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- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
- C40B50/04—Methods of creating libraries, e.g. combinatorial synthesis using dynamic combinatorial chemistry techniques
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
- C40B50/14—Solid phase synthesis, i.e. wherein one or more library building blocks are bound to a solid support during library creation; Particular methods of cleavage from the solid support
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
- C40B50/14—Solid phase synthesis, i.e. wherein one or more library building blocks are bound to a solid support during library creation; Particular methods of cleavage from the solid support
- C40B50/16—Solid phase synthesis, i.e. wherein one or more library building blocks are bound to a solid support during library creation; Particular methods of cleavage from the solid support involving encoding steps
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/08—Geometry, shape and general structure
- B01L2300/0809—Geometry, shape and general structure rectangular shaped
- B01L2300/0829—Multi-well plates; Microtitration plates
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/179—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/16—Primer sets for multiplex assays
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- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Molecular Biology (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Biomedical Technology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Microbiology (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Medicinal Chemistry (AREA)
- General Chemical & Material Sciences (AREA)
- Analytical Chemistry (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
- Immunology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Structural Engineering (AREA)
- Hematology (AREA)
- Clinical Laboratory Science (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| KR1020247017956A KR20240091184A (ko) | 2017-09-25 | 2018-09-24 | 올리고뉴클레오타이드 인코딩된 화학적 라이브러리 |
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201762562912P | 2017-09-25 | 2017-09-25 | |
| US201762562905P | 2017-09-25 | 2017-09-25 | |
| US62/562,912 | 2017-09-25 | ||
| US62/562,905 | 2017-09-25 | ||
| PCT/US2018/052497 WO2019060857A1 (en) | 2017-09-25 | 2018-09-24 | CHEMICAL LIBRARIES CODED BY OLIGONUCLEOTIDES |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| KR1020247017956A Division KR20240091184A (ko) | 2017-09-25 | 2018-09-24 | 올리고뉴클레오타이드 인코딩된 화학적 라이브러리 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| KR20200120602A KR20200120602A (ko) | 2020-10-21 |
| KR102671480B1 true KR102671480B1 (ko) | 2024-05-31 |
Family
ID=65807199
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| KR1020207012104A Active KR102671480B1 (ko) | 2017-09-25 | 2018-09-24 | 올리고뉴클레오타이드 인코딩된 화학적 라이브러리 |
| KR1020247017956A Pending KR20240091184A (ko) | 2017-09-25 | 2018-09-24 | 올리고뉴클레오타이드 인코딩된 화학적 라이브러리 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| KR1020247017956A Pending KR20240091184A (ko) | 2017-09-25 | 2018-09-24 | 올리고뉴클레오타이드 인코딩된 화학적 라이브러리 |
Country Status (8)
| Country | Link |
|---|---|
| US (8) | US20190210018A1 (https=) |
| EP (1) | EP3687687A4 (https=) |
| JP (3) | JP7361700B2 (https=) |
| KR (2) | KR102671480B1 (https=) |
| CN (2) | CN111971124B (https=) |
| CA (1) | CA3076747A1 (https=) |
| IL (1) | IL273511A (https=) |
| WO (2) | WO2019060830A1 (https=) |
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| US10258590B2 (en) * | 2015-10-14 | 2019-04-16 | Alcresta Therapeutics, Inc. | Enteral feeding device and related methods of use |
| EP3472351B1 (de) | 2016-06-15 | 2020-10-28 | Ludwig-Maximilians-Universität München | Einzelmolekülnachweis bzw. -quantifizierung durch dna-nanotechnologie |
| WO2018151810A1 (en) | 2017-02-17 | 2018-08-23 | The Scripps Research Institute | Defining rna-small molecule affinity landscapes enables design of a small molecular inhibitor of an oncogenic non-coding rna |
| WO2019060830A1 (en) | 2017-09-25 | 2019-03-28 | Plexium, Inc. | CHEMICAL LIBRARIES CODED BY OLIGONUCLEOTIDES |
| WO2019217758A1 (en) | 2018-05-10 | 2019-11-14 | 10X Genomics, Inc. | Methods and systems for molecular library generation |
| GB201817321D0 (en) * | 2018-10-24 | 2018-12-05 | Nanna Therapeutics Ltd | Microbeads for tagless encoded chemical library screening |
| CN110331447B (zh) * | 2019-07-08 | 2022-05-27 | 上海药明康德新药开发有限公司 | DNA编码化合物库构建中制备On-DNA芳基炔烃化合物的方法 |
| CN110359097B (zh) * | 2019-07-08 | 2022-09-20 | 上海药明康德新药开发有限公司 | DNA编码化合物库构建中通过Suzuki偶联反应得到On-DNA芳烃化合物的方法 |
| US20220403374A1 (en) * | 2019-09-03 | 2022-12-22 | Flexomics, Llc | Optically readable barcodes and systems and methods for characterizing molecular interactions |
| AU2020361681A1 (en) * | 2019-10-10 | 2022-05-05 | 1859, Inc. | Methods and systems for microfluidic screening |
| US20210171939A1 (en) * | 2019-12-06 | 2021-06-10 | Bio-Rad Laboratories, Inc. | Sample processing barcoded bead composition, method, manufacturing, and system |
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| WO2021146184A1 (en) | 2020-01-13 | 2021-07-22 | Fluent Biosciences Inc. | Single cell sequencing |
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| US12577702B2 (en) * | 2020-01-28 | 2026-03-17 | Plexium, Inc. | Oligonucleotide encoded chemical libraries, related systems, devices, and methods for detecting, analyzing, quantifying, and testing biologics/genetics |
| US11040343B1 (en) | 2020-01-28 | 2021-06-22 | Plexium, Inc. | Caps for assay devices |
| EP4121016A4 (en) | 2020-03-16 | 2024-09-11 | Fluent Biosciences Inc. | MULTI-OMICS ANALYSIS IN MONODISPERSED DROPLETS |
| US12428685B2 (en) | 2020-03-24 | 2025-09-30 | Illumina, Inc. | Viral detection using template emulsification |
| KR20230015347A (ko) * | 2020-05-25 | 2023-01-31 | 닛산 가가쿠 가부시키가이샤 | 절단 가능한 dna 코드화 라이브러리 |
| WO2022008641A1 (en) * | 2020-07-08 | 2022-01-13 | Roche Sequencing Solutions, Inc. | Split-pool synthesis apparatus and methods of performing split-pool synthesis |
| US12241059B2 (en) | 2020-07-15 | 2025-03-04 | Illumina, Inc. | Tiered ligation oligos |
| EP4208565A4 (en) * | 2020-09-01 | 2024-10-09 | Replay Holdings, LLC | Methods and systems for nucleic acid synthesis |
| CN117355640A (zh) * | 2021-04-16 | 2024-01-05 | 普莱克斯姆公司 | 用于测定装置的盖 |
| IL307630A (en) * | 2021-04-16 | 2023-12-01 | Plexium Inc | Test devices for combinatorial libraries |
| CA3220008A1 (en) * | 2021-06-07 | 2022-12-15 | Plexium, Inc. | Transfer dispensers for assay devices with bead size exclusion |
| CN113403690B (zh) * | 2021-06-21 | 2022-07-19 | 吉林大学 | 一种dna编码化合物库药物分子垂钓方法 |
| CN117580959A (zh) * | 2021-06-24 | 2024-02-20 | 因美纳有限公司 | 用于基于小珠的核酸的组合索引的方法和组合物 |
| WO2023287957A1 (en) * | 2021-07-15 | 2023-01-19 | Fluent Biosciences, Inc. | Pre-templated instant partitioning of dna-encoded libraries |
| CN113549676B (zh) * | 2021-08-24 | 2022-12-27 | 重庆范德瓦尔斯生物科技有限公司 | 一种基于磁珠的RNA pull down新方法 |
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| US20250215615A1 (en) * | 2021-11-24 | 2025-07-03 | Nissan Chemical Corporation | Method for evaluating dna-encoded library |
| WO2023108090A2 (en) * | 2021-12-09 | 2023-06-15 | University Of Florida Research Foundation, Incorporated | Platform using dna-encoded small molecule libraries and rna selection to design small molecules that target rna |
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| US12577556B2 (en) | 2022-05-09 | 2026-03-17 | Zafrens Inc. | Perturbation beads for use in assays |
| CN115058492B (zh) * | 2022-07-07 | 2025-09-19 | 东南大学 | 一种基于均分组合编码微球的空间转录组测序文库构建方法 |
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| CN119032204A (zh) * | 2022-12-29 | 2024-11-26 | 伊路敏纳公司 | 使用组合分割池策略和化学连接产生条形码化小珠的大文库 |
| WO2024196941A1 (en) * | 2023-03-20 | 2024-09-26 | Fluid Discovery | Core-shell gel particles for separating and analyzing rna and dna from a cell |
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