JPWO2020051561A5 - - Google Patents
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- Publication number
- JPWO2020051561A5 JPWO2020051561A5 JP2021512514A JP2021512514A JPWO2020051561A5 JP WO2020051561 A5 JPWO2020051561 A5 JP WO2020051561A5 JP 2021512514 A JP2021512514 A JP 2021512514A JP 2021512514 A JP2021512514 A JP 2021512514A JP WO2020051561 A5 JPWO2020051561 A5 JP WO2020051561A5
- Authority
- JP
- Japan
- Prior art keywords
- cas9
- terminal fragment
- fragment
- fused
- terminal
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 108091033409 CRISPR Proteins 0.000 claims description 307
- 210000004900 c-terminal fragment Anatomy 0.000 claims description 132
- 108091033319 polynucleotide Proteins 0.000 claims description 126
- 239000002157 polynucleotide Substances 0.000 claims description 126
- 102000040430 polynucleotide Human genes 0.000 claims description 126
- 210000004898 n-terminal fragment Anatomy 0.000 claims description 123
- 108020001507 fusion proteins Proteins 0.000 claims description 73
- 102000037865 fusion proteins Human genes 0.000 claims description 73
- 239000013598 vector Substances 0.000 claims description 52
- 210000004027 cell Anatomy 0.000 claims description 35
- 108010077850 Nuclear Localization Signals Proteins 0.000 claims description 33
- 238000000034 method Methods 0.000 claims description 33
- 239000012634 fragment Substances 0.000 claims description 25
- 101000910035 Streptococcus pyogenes serotype M1 CRISPR-associated endonuclease Cas9/Csn1 Proteins 0.000 claims description 23
- 150000001413 amino acids Chemical class 0.000 claims description 20
- 102000004169 proteins and genes Human genes 0.000 claims description 18
- 108090000623 proteins and genes Proteins 0.000 claims description 18
- FWMNVWWHGCHHJJ-SKKKGAJSSA-N 4-amino-1-[(2r)-6-amino-2-[[(2r)-2-[[(2r)-2-[[(2r)-2-amino-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]piperidine-4-carboxylic acid Chemical compound C([C@H](C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCCN)C(=O)N1CCC(N)(CC1)C(O)=O)NC(=O)[C@H](N)CC=1C=CC=CC=1)C1=CC=CC=C1 FWMNVWWHGCHHJJ-SKKKGAJSSA-N 0.000 claims description 17
- 125000003412 L-alanyl group Chemical group [H]N([H])[C@@](C([H])([H])[H])(C(=O)[*])[H] 0.000 claims description 17
- 108020005004 Guide RNA Proteins 0.000 claims description 15
- 230000035772 mutation Effects 0.000 claims description 13
- 210000004899 c-terminal region Anatomy 0.000 claims description 12
- 101710169336 5'-deoxyadenosine deaminase Proteins 0.000 claims description 10
- 102000055025 Adenosine deaminases Human genes 0.000 claims description 10
- 239000013603 viral vector Substances 0.000 claims description 10
- 125000002842 L-seryl group Chemical group O=C([*])[C@](N([H])[H])([H])C([H])([H])O[H] 0.000 claims description 9
- 125000000769 L-threonyl group Chemical group [H]N([H])[C@]([H])(C(=O)[*])[C@](O[H])(C([H])([H])[H])[H] 0.000 claims description 9
- 125000000729 N-terminal amino-acid group Chemical group 0.000 claims description 8
- 239000000539 dimer Substances 0.000 claims description 8
- 230000000694 effects Effects 0.000 claims description 8
- 108010008532 Deoxyribonuclease I Proteins 0.000 claims description 6
- 102000007260 Deoxyribonuclease I Human genes 0.000 claims description 6
- 241000175212 Herpesvirales Species 0.000 claims description 5
- 108090000765 processed proteins & peptides Proteins 0.000 claims description 5
- 230000001177 retroviral effect Effects 0.000 claims description 5
- 239000004117 Lignosulphonate Substances 0.000 claims description 4
- 125000003275 alpha amino acid group Chemical group 0.000 claims description 4
- 210000004962 mammalian cell Anatomy 0.000 claims description 4
- 238000006467 substitution reaction Methods 0.000 claims description 4
- 229920001184 polypeptide Polymers 0.000 claims description 3
- 102000004196 processed proteins & peptides Human genes 0.000 claims description 3
- 125000001429 N-terminal alpha-amino-acid group Chemical group 0.000 claims description 2
- 101710163270 Nuclease Proteins 0.000 claims description 2
- 230000017730 intein-mediated protein splicing Effects 0.000 claims description 2
- 239000002773 nucleotide Substances 0.000 claims description 2
- 125000003729 nucleotide group Chemical group 0.000 claims description 2
- 238000000338 in vitro Methods 0.000 claims 3
- 230000001580 bacterial effect Effects 0.000 claims 1
- 241000702421 Dependoparvovirus Species 0.000 description 3
- 241000894006 Bacteria Species 0.000 description 1
- 230000000295 complement effect Effects 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2024192680A JP2025028857A (ja) | 2018-09-07 | 2024-11-01 | 核酸塩基編集システムを送達するための組成物および方法 |
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201862728703P | 2018-09-07 | 2018-09-07 | |
| US62/728,703 | 2018-09-07 | ||
| US201862779404P | 2018-12-13 | 2018-12-13 | |
| US62/779,404 | 2018-12-13 | ||
| PCT/US2019/050111 WO2020051561A1 (en) | 2018-09-07 | 2019-09-07 | Compositions and methods for delivering a nucleobase editing system |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2024192680A Division JP2025028857A (ja) | 2018-09-07 | 2024-11-01 | 核酸塩基編集システムを送達するための組成物および方法 |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2022500017A JP2022500017A (ja) | 2022-01-04 |
| JPWO2020051561A5 true JPWO2020051561A5 (enExample) | 2022-09-14 |
| JP7657711B2 JP7657711B2 (ja) | 2025-04-07 |
Family
ID=69722796
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2021512514A Active JP7657711B2 (ja) | 2018-09-07 | 2019-09-07 | 核酸塩基編集システムを送達するための組成物および方法 |
| JP2024192680A Pending JP2025028857A (ja) | 2018-09-07 | 2024-11-01 | 核酸塩基編集システムを送達するための組成物および方法 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2024192680A Pending JP2025028857A (ja) | 2018-09-07 | 2024-11-01 | 核酸塩基編集システムを送達するための組成物および方法 |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US20210301274A1 (enExample) |
| EP (1) | EP3847254A4 (enExample) |
| JP (2) | JP7657711B2 (enExample) |
| KR (1) | KR20210055733A (enExample) |
| CN (1) | CN112969790B (enExample) |
| AU (1) | AU2019336245A1 (enExample) |
| CA (1) | CA3112011A1 (enExample) |
| WO (1) | WO2020051561A1 (enExample) |
Families Citing this family (28)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2019051097A1 (en) | 2017-09-08 | 2019-03-14 | The Regents Of The University Of California | RNA-GUIDED ENDONUCLEASE FUSION POLYPEPTIDES AND METHODS OF USING SAME |
| US12133884B2 (en) | 2018-05-11 | 2024-11-05 | Beam Therapeutics Inc. | Methods of substituting pathogenic amino acids using programmable base editor systems |
| AU2019336245A1 (en) * | 2018-09-07 | 2021-04-01 | Beam Therapeutics Inc. | Compositions and methods for delivering a nucleobase editing system |
| US12454694B2 (en) | 2018-09-07 | 2025-10-28 | Beam Therapeutics Inc. | Compositions and methods for improving base editing |
| WO2020252455A1 (en) | 2019-06-13 | 2020-12-17 | The General Hospital Corporation | Engineered human-endogenous virus-like particles and methods of use thereof for delivery to cells |
| JP7759311B2 (ja) | 2019-07-19 | 2025-10-23 | フラッグシップ パイオニアリング イノベーションズ シックス,エルエルシー | リコンビナーゼ組成物及び使用方法 |
| IL296024A (en) | 2020-03-04 | 2022-10-01 | Flagship Pioneering Innovations Vi Llc | Methods and compositions for modulating a genome |
| WO2021188840A1 (en) * | 2020-03-19 | 2021-09-23 | Rewrite Therapeutics, Inc. | Methods and compositions for directed genome editing |
| GB2632564B (en) * | 2020-04-09 | 2025-06-18 | Verve Therapeutics Inc | Base editing of angptl3 and methods of using same for treatment of disease |
| CN116670154A (zh) | 2020-07-24 | 2023-08-29 | 总医院公司 | 增强的病毒样颗粒及使用其递送至细胞的方法 |
| US20230383277A1 (en) * | 2020-10-14 | 2023-11-30 | Beam Therapeutics Inc. | Compositions and methods for treating glycogen storage disease type 1a |
| CA3227103A1 (en) | 2021-07-30 | 2023-02-02 | Matthew P. GEMBERLING | Compositions and methods for modulating expression of frataxin (fxn) |
| US20240252684A1 (en) | 2021-07-30 | 2024-08-01 | Tune Therapeutics, Inc. | Compositions and methods for modulating expression of methyl-cpg binding protein 2 (mecp2) |
| AU2022343268A1 (en) | 2021-09-08 | 2024-03-28 | Flagship Pioneering Innovations Vi, Llc | Methods and compositions for modulating a genome |
| AU2022402249A1 (en) | 2021-12-03 | 2024-07-11 | President And Fellows Of Harvard College | Compositions and methods for efficient in vivo delivery |
| CN117187220A (zh) * | 2022-03-08 | 2023-12-08 | 中国科学院遗传与发育生物学研究所 | 腺嘌呤脱氨酶及其在碱基编辑中的用途 |
| WO2023225572A2 (en) | 2022-05-17 | 2023-11-23 | Nvelop Therapeutics, Inc. | Compositions and methods for efficient in vivo delivery |
| CA3261865A1 (en) | 2022-07-12 | 2024-01-18 | Tune Therapeutics, Inc. | TARGETED TRANSCRIPTIONAL ACTIVATION COMPOSITIONS, SYSTEMS AND METHODS |
| WO2024097763A1 (en) * | 2022-11-01 | 2024-05-10 | Memorial Sloan-Kettering Cancer Center | Intein-based sorting system and modular chimeric polypeptides |
| WO2024163678A2 (en) | 2023-02-01 | 2024-08-08 | Tune Therapeutics, Inc. | Fusion proteins and systems for targeted activation of frataxin (fxn) and related methods |
| WO2024163683A2 (en) | 2023-02-01 | 2024-08-08 | Tune Therapeutics, Inc. | Systems, compositions, and methods for modulating expression of methyl-cpg binding protein 2 (mecp2) and x-inactive specific transcript (xist) |
| WO2024233941A1 (en) * | 2023-05-11 | 2024-11-14 | Massachusetts Eye And Ear Infirmary | Base editing approaches to treat abca4-associated stargardt disease |
| WO2024249954A1 (en) | 2023-05-31 | 2024-12-05 | Capstan Therapeutics, Inc. | Lipid nanoparticle formulations and compositions |
| WO2025038955A1 (en) * | 2023-08-16 | 2025-02-20 | Seattle Children's Hospital D/B/A Seattle Children's Research Institute | Systems and methods for improving safety of split intein aav mediated gene therapy |
| CN117568313B (zh) * | 2024-01-15 | 2024-04-26 | 上海贝斯昂科生物科技有限公司 | 基因编辑组合物及其用途 |
| WO2025194124A1 (en) | 2024-03-14 | 2025-09-18 | Tessera Therapeutics, Inc. | Modified st1cas9 guide nucleic acids |
| WO2025194138A1 (en) | 2024-03-14 | 2025-09-18 | Tessera Therapeutics, Inc. | St1cas9 compositions and methods for modulating a genome |
| WO2025243196A1 (en) * | 2024-05-21 | 2025-11-27 | Fondazione Istituto Italiano Di Tecnologia | Gene regulation system (tuser) |
Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| SG11201609211VA (en) * | 2014-03-05 | 2016-12-29 | Nat Univ Corp Univ Kobe | Genomic sequence modification method for specifically converting nucleic acid bases of targeted dna sequence, and molecular complex for use in same |
| US10077453B2 (en) * | 2014-07-30 | 2018-09-18 | President And Fellows Of Harvard College | CAS9 proteins including ligand-dependent inteins |
| WO2016112242A1 (en) | 2015-01-08 | 2016-07-14 | President And Fellows Of Harvard College | Split cas9 proteins |
| CN106011104B (zh) | 2015-05-21 | 2019-09-27 | 清华大学 | 利用拆分Cas系统进行基因编辑和表达调控方法 |
| WO2016205759A1 (en) * | 2015-06-18 | 2016-12-22 | The Broad Institute Inc. | Engineering and optimization of systems, methods, enzymes and guide scaffolds of cas9 orthologs and variants for sequence manipulation |
| US20200340012A1 (en) | 2016-08-18 | 2020-10-29 | The Regents Of The University Of California | Crispr-cas genome engineering via a modular aav delivery system |
| EP3526320A1 (en) * | 2016-10-14 | 2019-08-21 | President and Fellows of Harvard College | Aav delivery of nucleobase editors |
| AU2019336245A1 (en) * | 2018-09-07 | 2021-04-01 | Beam Therapeutics Inc. | Compositions and methods for delivering a nucleobase editing system |
-
2019
- 2019-09-07 AU AU2019336245A patent/AU2019336245A1/en active Pending
- 2019-09-07 KR KR1020217009863A patent/KR20210055733A/ko active Pending
- 2019-09-07 EP EP19857653.0A patent/EP3847254A4/en active Pending
- 2019-09-07 US US17/273,209 patent/US20210301274A1/en active Pending
- 2019-09-07 JP JP2021512514A patent/JP7657711B2/ja active Active
- 2019-09-07 CA CA3112011A patent/CA3112011A1/en active Pending
- 2019-09-07 CN CN201980073055.6A patent/CN112969790B/zh active Active
- 2019-09-07 WO PCT/US2019/050111 patent/WO2020051561A1/en not_active Ceased
-
2024
- 2024-11-01 JP JP2024192680A patent/JP2025028857A/ja active Pending
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