JP6915939B2 - 核酸配列決定方法 - Google Patents
核酸配列決定方法 Download PDFInfo
- Publication number
- JP6915939B2 JP6915939B2 JP2018556287A JP2018556287A JP6915939B2 JP 6915939 B2 JP6915939 B2 JP 6915939B2 JP 2018556287 A JP2018556287 A JP 2018556287A JP 2018556287 A JP2018556287 A JP 2018556287A JP 6915939 B2 JP6915939 B2 JP 6915939B2
- Authority
- JP
- Japan
- Prior art keywords
- nucleotide
- nucleic acid
- polymerase
- nucleotides
- primer
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Fee Related
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
- C12N9/1241—Nucleotidyltransferases (2.7.7)
- C12N9/1247—DNA-directed RNA polymerase (2.7.7.6)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y207/00—Transferases transferring phosphorus-containing groups (2.7)
- C12Y207/07—Nucleotidyltransferases (2.7.7)
- C12Y207/07006—DNA-directed RNA polymerase (2.7.7.6)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/10—Nucleotidyl transfering
- C12Q2521/101—DNA polymerase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
- C12Q2565/50—Detection characterised by immobilisation to a surface
- C12Q2565/518—Detection characterised by immobilisation to a surface characterised by the immobilisation of the nucleic acid sample or target
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Medicinal Chemistry (AREA)
- Biomedical Technology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Enzymes And Modification Thereof (AREA)
- Chemical Kinetics & Catalysis (AREA)
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201662329489P | 2016-04-29 | 2016-04-29 | |
| US62/329,489 | 2016-04-29 | ||
| US201762444733P | 2017-01-10 | 2017-01-10 | |
| US62/444,733 | 2017-01-10 | ||
| PCT/US2017/030135 WO2017190012A1 (en) | 2016-04-29 | 2017-04-28 | Method of nucleic acid sequence determination |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2019526225A JP2019526225A (ja) | 2019-09-19 |
| JP2019526225A5 JP2019526225A5 (OSRAM) | 2019-12-26 |
| JP6915939B2 true JP6915939B2 (ja) | 2021-08-11 |
Family
ID=58672825
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2018556287A Expired - Fee Related JP6915939B2 (ja) | 2016-04-29 | 2017-04-28 | 核酸配列決定方法 |
Country Status (9)
| Country | Link |
|---|---|
| US (2) | US10584379B2 (OSRAM) |
| EP (1) | EP3449011B1 (OSRAM) |
| JP (1) | JP6915939B2 (OSRAM) |
| KR (1) | KR102231977B1 (OSRAM) |
| CN (1) | CN109154024B (OSRAM) |
| AU (1) | AU2017258523B2 (OSRAM) |
| CA (1) | CA3022431C (OSRAM) |
| SG (1) | SG11201809522WA (OSRAM) |
| WO (1) | WO2017190012A1 (OSRAM) |
Families Citing this family (40)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
| EP3449011B1 (en) | 2016-04-29 | 2020-11-04 | Omniome, Inc. | Method of nucleic acid sequence determination |
| JP6828140B2 (ja) * | 2016-08-15 | 2021-02-10 | オムニオム インコーポレイテッドOmniome, Inc. | 核酸をシーケンシングするための方法及びシステム |
| CA3050695C (en) * | 2017-01-20 | 2024-02-20 | Omniome, Inc. | Process for cognate nucleotide detection in a nucleic acid sequencing workflow |
| US10161003B2 (en) | 2017-04-25 | 2018-12-25 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
| AU2018353136B2 (en) | 2017-10-19 | 2022-05-19 | Pacific Biosciences Of California, Inc. | Simultaneous background reduction and complex stabilization in binding assay workflows |
| AU2019221691B2 (en) | 2018-02-16 | 2022-04-28 | Illumina Singapore Pte. Ltd. | Charge-tagged nucleotides and methods of use thereof |
| JP7554117B2 (ja) | 2018-04-26 | 2024-09-19 | パシフィック・バイオサイエンシズ・オブ・カリフォルニア・インク. | 核酸-ヌクレオチド-ポリメラーゼ複合体を安定化するための方法及び組成物 |
| BR112020023494A2 (pt) | 2018-05-17 | 2021-03-30 | Stuart Lindsay | Dispositivo, sistema e método para medição elétrica direta de atividade enzimática, bem como método para sequenciamento |
| WO2019231568A1 (en) | 2018-05-31 | 2019-12-05 | Omniome, Inc. | Increased signal to noise in nucleic acid sequencing |
| CN112567048A (zh) | 2018-07-24 | 2021-03-26 | 欧姆尼欧美公司 | 三元复合物种类的连续形成 |
| US11242512B2 (en) | 2018-09-17 | 2022-02-08 | Omniome, Inc. | Engineered polymerases for improved sequencing |
| US10768173B1 (en) | 2019-09-06 | 2020-09-08 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
| US10876148B2 (en) | 2018-11-14 | 2020-12-29 | Element Biosciences, Inc. | De novo surface preparation and uses thereof |
| US10704094B1 (en) | 2018-11-14 | 2020-07-07 | Element Biosciences, Inc. | Multipart reagents having increased avidity for polymerase binding |
| WO2020101795A1 (en) | 2018-11-15 | 2020-05-22 | Omniome, Inc. | Electronic detection of nucleic acid structure |
| GB2585608B (en) | 2018-12-04 | 2021-11-03 | Omniome Inc | Mixed-phase fluids for nucleic acid sequencing and other analytical assays |
| EP3899032A2 (en) | 2018-12-20 | 2021-10-27 | Omniome, Inc. | Temperature control for analysis of nucleic acids and other analytes |
| CA3128358A1 (en) | 2019-01-30 | 2020-08-06 | Arizona Board Of Regents On Behalf Of Arizona State University | Bioelectronic circuits, systems and methods for preparing and using them |
| EP3924513B1 (en) | 2019-02-14 | 2023-04-12 | Pacific Biosciences of California, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
| US12313627B2 (en) | 2019-05-01 | 2025-05-27 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
| US12391929B2 (en) | 2019-05-24 | 2025-08-19 | Element Biosciences, Inc. | Polymerase-nucleotide conjugates for sequencing by trapping |
| WO2020242901A1 (en) * | 2019-05-24 | 2020-12-03 | Element Biosciences, Inc. | Polymerase-nucleotide conjugates for sequencing by trapping |
| SG11202112851RA (en) * | 2019-06-20 | 2021-12-30 | Univ Arizona State | Direct electrical readout of nucleic acid sequences |
| WO2020257797A1 (en) * | 2019-06-21 | 2020-12-24 | Thermo Fisher Scientific Baltics Uab | Oligonucleotide-tethered triphosphate nucleotides useful for labelling nucleic acids for preparing next-generation sequencing libraries |
| EP4265628B1 (en) | 2019-09-10 | 2025-11-05 | Pacific Biosciences of California, Inc. | Reversible modification of nucleotides |
| US11287422B2 (en) | 2019-09-23 | 2022-03-29 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
| CN118186063A (zh) | 2019-10-18 | 2024-06-14 | 加利福尼亚太平洋生物科学股份有限公司 | 用于对核酸加帽的方法和组合物 |
| US20210139867A1 (en) | 2019-11-08 | 2021-05-13 | Omniome, Inc. | Engineered polymerases for improved sequencing by binding |
| DE202019106694U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
| DE202019106695U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
| CN115516104A (zh) | 2020-03-03 | 2022-12-23 | 加利福尼亚太平洋生物科学股份有限公司 | 用于对双链核酸进行测序的方法和组合物 |
| US20230183798A1 (en) | 2020-05-05 | 2023-06-15 | Pacific Biosciences Of California, Inc. | Compositions and methods for modifying polymerase-nucleic acid complexes |
| WO2022006081A1 (en) * | 2020-06-30 | 2022-01-06 | Illumina, Inc. | Catalytically controlled sequencing by synthesis to produce scarless dna |
| CN117858959A (zh) | 2021-05-10 | 2024-04-09 | 加利福尼亚太平洋生物科学股份有限公司 | 滚环扩增期间的dna扩增缓冲液补充 |
| WO2022240764A1 (en) | 2021-05-10 | 2022-11-17 | Pacific Biosciences Of California, Inc. | Single-molecule seeding and amplification on a surface |
| WO2023035108A1 (zh) * | 2021-09-07 | 2023-03-16 | 深圳华大智造科技股份有限公司 | 一种用于分析靶多核苷酸的序列的方法 |
| WO2023081485A1 (en) * | 2021-11-08 | 2023-05-11 | Pacific Biosciences Of California, Inc. | Stepwise sequencing of a polynucleotide with a homogenous reaction mixture |
| WO2025010160A1 (en) | 2023-07-06 | 2025-01-09 | Pacific Biosciences Of California, Inc. | Methods and compositions for stabilizing concatemers |
| WO2025244989A1 (en) | 2024-05-21 | 2025-11-27 | Pacific Biosciences Of California, Inc. | Selectively functionalized nanoscale wells |
Family Cites Families (29)
| Publication number | Priority date | Publication date | Assignee | Title |
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| WO1991006678A1 (en) | 1989-10-26 | 1991-05-16 | Sri International | Dna sequencing |
| US7057026B2 (en) | 2001-12-04 | 2006-06-06 | Solexa Limited | Labelled nucleotides |
| US7414116B2 (en) | 2002-08-23 | 2008-08-19 | Illumina Cambridge Limited | Labelled nucleotides |
| AU2003269991A1 (en) * | 2003-08-20 | 2005-03-10 | Applera Corporation | Polymerase compositions |
| US8071755B2 (en) | 2004-05-25 | 2011-12-06 | Helicos Biosciences Corporation | Nucleotide analogs |
| EP1766075B1 (en) * | 2004-06-10 | 2010-03-17 | Amersham Biosciences Corp. | Method for nucleic acid analysis |
| US7264934B2 (en) | 2004-06-10 | 2007-09-04 | Ge Healthcare Bio-Sciences Corp. | Rapid parallel nucleic acid analysis |
| US7315019B2 (en) | 2004-09-17 | 2008-01-01 | Pacific Biosciences Of California, Inc. | Arrays of optical confinements and uses thereof |
| US7482120B2 (en) | 2005-01-28 | 2009-01-27 | Helicos Biosciences Corporation | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
| US7544794B1 (en) | 2005-03-11 | 2009-06-09 | Steven Albert Benner | Method for sequencing DNA and RNA by synthesis |
| US8192930B2 (en) * | 2006-02-08 | 2012-06-05 | Illumina Cambridge Limited | Method for sequencing a polynucleotide template |
| EP3722409A1 (en) | 2006-03-31 | 2020-10-14 | Illumina, Inc. | Systems and devices for sequence by synthesis analysis |
| US8962293B2 (en) * | 2006-10-18 | 2015-02-24 | Roche Molecular Systems, Inc. | DNA polymerases and related methods |
| US8026091B2 (en) * | 2007-07-13 | 2011-09-27 | Roche Molecular Systems, Inc. | DNA polymerases and related methods |
| US8652781B2 (en) | 2008-02-12 | 2014-02-18 | Pacific Biosciences Of California, Inc. | Cognate sampling kinetics |
| US8628940B2 (en) | 2008-09-24 | 2014-01-14 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
| AU2009251883B2 (en) | 2008-03-31 | 2014-09-11 | Pacific Biosciences Of California, Inc. | Generation of modified polymerases for improved accuracy in single molecule sequencing |
| WO2009145828A2 (en) | 2008-03-31 | 2009-12-03 | Pacific Biosciences Of California, Inc. | Two slow-step polymerase enzyme systems and methods |
| EP2379748A4 (en) | 2008-12-23 | 2012-08-29 | Illumina Inc | MULTIBASE RELEASE FOR LONG READINGS IN SEQUENCING BY SYNTHESIS PROTOCOLS |
| WO2010111686A2 (en) | 2009-03-27 | 2010-09-30 | Life Technologies Corp | Labeled enzyme compositions, methods & systems |
| US8632975B2 (en) * | 2009-06-05 | 2014-01-21 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
| US20130040365A1 (en) | 2011-08-10 | 2013-02-14 | Life Technologies Corporation | Polymerase compositions, methods of making and using same |
| US9279154B2 (en) | 2011-12-21 | 2016-03-08 | Illumina, Inc. | Apparatus and methods for kinetic analysis and determination of nucleic acid sequences |
| TWI487789B (zh) | 2012-12-24 | 2015-06-11 | Ind Tech Res Inst | 單離的脫氧核糖核酸聚合酶、套組與其應用 |
| GB201301178D0 (en) | 2013-01-23 | 2013-03-06 | Dynamic Biosensors Gmbh | Method for sequencing a template nucleic acid immobilized on a substrate |
| US9657281B2 (en) | 2013-09-30 | 2017-05-23 | Life Technologies Corporation | Polymerase compositions, methods of making and using same |
| US10077470B2 (en) | 2015-07-21 | 2018-09-18 | Omniome, Inc. | Nucleic acid sequencing methods and systems |
| US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
| EP3449011B1 (en) | 2016-04-29 | 2020-11-04 | Omniome, Inc. | Method of nucleic acid sequence determination |
-
2017
- 2017-04-28 EP EP17722356.7A patent/EP3449011B1/en not_active Not-in-force
- 2017-04-28 US US15/581,822 patent/US10584379B2/en active Active
- 2017-04-28 JP JP2018556287A patent/JP6915939B2/ja not_active Expired - Fee Related
- 2017-04-28 CA CA3022431A patent/CA3022431C/en active Active
- 2017-04-28 KR KR1020187034503A patent/KR102231977B1/ko active Active
- 2017-04-28 AU AU2017258523A patent/AU2017258523B2/en not_active Ceased
- 2017-04-28 WO PCT/US2017/030135 patent/WO2017190012A1/en not_active Ceased
- 2017-04-28 CN CN201780026228.XA patent/CN109154024B/zh active Active
- 2017-04-28 SG SG11201809522WA patent/SG11201809522WA/en unknown
-
2020
- 2020-01-07 US US16/736,071 patent/US11976323B2/en active Active
Also Published As
| Publication number | Publication date |
|---|---|
| AU2017258523B2 (en) | 2020-08-13 |
| WO2017190012A1 (en) | 2017-11-02 |
| CN109154024B (zh) | 2022-03-04 |
| US11976323B2 (en) | 2024-05-07 |
| EP3449011B1 (en) | 2020-11-04 |
| SG11201809522WA (en) | 2018-11-29 |
| KR102231977B1 (ko) | 2021-03-24 |
| EP3449011A1 (en) | 2019-03-06 |
| US20170314072A1 (en) | 2017-11-02 |
| CA3022431C (en) | 2023-03-21 |
| US10584379B2 (en) | 2020-03-10 |
| AU2017258523A1 (en) | 2018-11-22 |
| KR20190003660A (ko) | 2019-01-09 |
| CA3022431A1 (en) | 2017-11-02 |
| JP2019526225A (ja) | 2019-09-19 |
| US20200199668A1 (en) | 2020-06-25 |
| CN109154024A (zh) | 2019-01-04 |
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