JP6336080B2 - 鋳型切り替え反応を用いるcDNA合成および単一細胞トランスクリプトームプロファイリングのための方法および組成物 - Google Patents
鋳型切り替え反応を用いるcDNA合成および単一細胞トランスクリプトームプロファイリングのための方法および組成物 Download PDFInfo
- Publication number
- JP6336080B2 JP6336080B2 JP2016536474A JP2016536474A JP6336080B2 JP 6336080 B2 JP6336080 B2 JP 6336080B2 JP 2016536474 A JP2016536474 A JP 2016536474A JP 2016536474 A JP2016536474 A JP 2016536474A JP 6336080 B2 JP6336080 B2 JP 6336080B2
- Authority
- JP
- Japan
- Prior art keywords
- locked
- cdna
- tso
- template switching
- rna
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1096—Processes for the isolation, preparation or purification of DNA or RNA cDNA Synthesis; Subtracted cDNA library construction, e.g. RT, RT-PCR
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/26—Preparation of nitrogen-containing carbohydrates
- C12P19/28—N-glycosides
- C12P19/30—Nucleotides
- C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/04—Libraries containing only organic compounds
- C40B40/06—Libraries containing nucleotides or polynucleotides, or derivatives thereof
- C40B40/08—Libraries containing RNA or DNA which encodes proteins, e.g. gene libraries
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
- C40B50/06—Biochemical methods, e.g. using enzymes or whole viable microorganisms
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Microbiology (AREA)
- General Health & Medical Sciences (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biomedical Technology (AREA)
- Immunology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Plant Pathology (AREA)
- Medicinal Chemistry (AREA)
- Pathology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201361869220P | 2013-08-23 | 2013-08-23 | |
| US61/869,220 | 2013-08-23 | ||
| PCT/US2014/052233 WO2015027135A1 (en) | 2013-08-23 | 2014-08-22 | Methods and compositions for cdna synthesis and single-cell transcriptome profiling using template switching reaction |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2017253460A Division JP6603699B2 (ja) | 2013-08-23 | 2017-12-28 | 鋳型切り替え反応を用いるcDNA合成および単一細胞トランスクリプトームプロファイリングのための方法および組成物 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| JP2016527919A JP2016527919A (ja) | 2016-09-15 |
| JP6336080B2 true JP6336080B2 (ja) | 2018-06-06 |
Family
ID=52484185
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2016536474A Active JP6336080B2 (ja) | 2013-08-23 | 2014-08-22 | 鋳型切り替え反応を用いるcDNA合成および単一細胞トランスクリプトームプロファイリングのための方法および組成物 |
| JP2017253460A Active JP6603699B2 (ja) | 2013-08-23 | 2017-12-28 | 鋳型切り替え反応を用いるcDNA合成および単一細胞トランスクリプトームプロファイリングのための方法および組成物 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2017253460A Active JP6603699B2 (ja) | 2013-08-23 | 2017-12-28 | 鋳型切り替え反応を用いるcDNA合成および単一細胞トランスクリプトームプロファイリングのための方法および組成物 |
Country Status (8)
| Country | Link |
|---|---|
| US (2) | US10266894B2 (OSRAM) |
| EP (1) | EP3036336B1 (OSRAM) |
| JP (2) | JP6336080B2 (OSRAM) |
| CN (2) | CN105579587A (OSRAM) |
| CA (1) | CA2921603C (OSRAM) |
| DK (1) | DK3036336T3 (OSRAM) |
| ES (1) | ES2827307T3 (OSRAM) |
| WO (1) | WO2015027135A1 (OSRAM) |
Families Citing this family (21)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN105579587A (zh) * | 2013-08-23 | 2016-05-11 | 惠氏公司 | 用于使用模板转换反应进行cDNA合成和单细胞转录组概况分析的方法和组合物 |
| PT3089822T (pt) * | 2013-12-30 | 2022-05-06 | Atreca Inc | Análise de ácidos nucleicos associados com células isoladas usando códigos de barras de ácido nucleico |
| WO2017048993A1 (en) | 2015-09-15 | 2017-03-23 | Takara Bio Usa, Inc. | Methods for preparing a next generation sequencing (ngs) library from a ribonucleic acid (rna) sample and compositions for practicing the same |
| SG11201803646YA (en) | 2015-11-04 | 2018-05-30 | Atreca Inc | Combinatorial sets of nucleic acid barcodes for analysis of nucleic acids associated with single cells |
| WO2017214417A1 (en) | 2016-06-10 | 2017-12-14 | Takara Bio Usa, Inc. | Methods and compositions employing blocked primers |
| CN106498040B (zh) * | 2016-10-12 | 2018-10-23 | 浙江大学 | 一种分子标记微珠及基于该分子标记微珠的高通量单细胞测序方法 |
| EP3538662B1 (en) * | 2016-11-10 | 2021-12-01 | Takara Bio USA, Inc. | Methods of producing amplified double stranded deoxyribonucleic acids and compositions and kits for use therein |
| JP7155136B2 (ja) | 2016-11-11 | 2022-10-18 | バイオ-ラド ラボラトリーズ,インコーポレイティド | 核酸試料をプロセシングする方法 |
| CN106868005B (zh) * | 2017-03-17 | 2020-07-21 | 中山大学附属肿瘤医院 | 一种用于高效快速扩增cDNA末端的锚定引物及扩增方法 |
| US11946043B2 (en) | 2017-09-11 | 2024-04-02 | Ludwig Institute For Cancer Research Ltd | Selective labeling of 5-methylcytosine in circulating cell-free DNA |
| CN108103055B (zh) * | 2018-01-09 | 2021-05-28 | 序康医疗科技(苏州)有限公司 | 一种单细胞rna逆转录与文库构建的方法 |
| WO2019152860A1 (en) | 2018-02-02 | 2019-08-08 | The United States Of America, As Represented By The Secretary, Department Of Health And Human Services | Random amplification methods for extremely low input nucleic acids |
| EP3837380A4 (en) | 2018-08-17 | 2022-05-11 | Cellecta, Inc. | MULTIPLEX PREPARATION OF BARCODE GENE-SPECIFIC DNA FRAGMENTS |
| EP3902922A1 (en) | 2018-12-28 | 2021-11-03 | Biobloxx AB | Method and kit for preparing complementary dna |
| CN113811610A (zh) * | 2019-05-09 | 2021-12-17 | 加利福尼亚太平洋生物科学股份有限公司 | 用于改进cDNA合成的组合物和方法 |
| CN114096679B (zh) | 2019-07-11 | 2024-04-09 | 学校法人东京理科大学 | 使用固相载体的核酸扩增方法 |
| US20230193254A1 (en) * | 2020-05-20 | 2023-06-22 | Chan Zuckerberg Biohub, Inc. | Total rna profiling of biological samples and single cells |
| CN117247990A (zh) * | 2022-06-17 | 2023-12-19 | 复旦大学 | 基于拓扑捕获的rna样本处理系统 |
| CN120693411A (zh) | 2023-03-09 | 2025-09-23 | 疫苗基因技术株式会社 | 扩增互补dna链的方法 |
| CN116497105B (zh) * | 2023-06-28 | 2023-09-29 | 浙江大学 | 基于末端转移酶的单细胞转录组测序试剂盒及测序方法 |
| CN119776495A (zh) * | 2024-12-31 | 2025-04-08 | 北京普译生物科技有限公司 | 一种cDNA建库中的模板转换方法 |
Family Cites Families (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5962271A (en) | 1996-01-03 | 1999-10-05 | Cloutech Laboratories, Inc. | Methods and compositions for generating full-length cDNA having arbitrary nucleotide sequence at the 3'-end |
| AU3274600A (en) | 1999-03-18 | 2000-10-09 | Exiqon A/S | One step sample preparation and detection of nucleic acids in complex biologicalsamples |
| EP3998346A1 (en) * | 2009-03-30 | 2022-05-18 | Illumina, Inc. | Gene expression analysis in single cells |
| DK3037536T3 (da) * | 2011-01-28 | 2020-01-13 | Illumina Inc | Oligonukleotiderstatning for di-taggede og retnings biblioteker |
| AU2012212148B8 (en) | 2011-02-02 | 2017-07-06 | University Of Washington Through Its Center For Commercialization | Massively parallel contiguity mapping |
| US9260753B2 (en) * | 2011-03-24 | 2016-02-16 | President And Fellows Of Harvard College | Single cell nucleic acid detection and analysis |
| CN105579587A (zh) * | 2013-08-23 | 2016-05-11 | 惠氏公司 | 用于使用模板转换反应进行cDNA合成和单细胞转录组概况分析的方法和组合物 |
-
2014
- 2014-08-22 CN CN201480053360.6A patent/CN105579587A/zh active Pending
- 2014-08-22 DK DK14837396.2T patent/DK3036336T3/da active
- 2014-08-22 EP EP14837396.2A patent/EP3036336B1/en active Active
- 2014-08-22 US US14/912,556 patent/US10266894B2/en active Active
- 2014-08-22 CA CA2921603A patent/CA2921603C/en active Active
- 2014-08-22 CN CN202211158053.7A patent/CN115558661A/zh active Pending
- 2014-08-22 JP JP2016536474A patent/JP6336080B2/ja active Active
- 2014-08-22 WO PCT/US2014/052233 patent/WO2015027135A1/en not_active Ceased
- 2014-08-22 ES ES14837396T patent/ES2827307T3/es active Active
-
2017
- 2017-12-28 JP JP2017253460A patent/JP6603699B2/ja active Active
-
2019
- 2019-02-19 US US16/279,245 patent/US20190264284A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| JP2016527919A (ja) | 2016-09-15 |
| CN115558661A (zh) | 2023-01-03 |
| US20160258016A1 (en) | 2016-09-08 |
| CA2921603C (en) | 2019-11-05 |
| US10266894B2 (en) | 2019-04-23 |
| ES2827307T3 (es) | 2021-05-20 |
| DK3036336T3 (da) | 2020-11-02 |
| CN105579587A (zh) | 2016-05-11 |
| WO2015027135A1 (en) | 2015-02-26 |
| CA2921603A1 (en) | 2015-02-26 |
| EP3036336A4 (en) | 2017-06-28 |
| US20190264284A1 (en) | 2019-08-29 |
| JP6603699B2 (ja) | 2019-11-06 |
| JP2018088924A (ja) | 2018-06-14 |
| EP3036336B1 (en) | 2020-09-30 |
| EP3036336A1 (en) | 2016-06-29 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| JP6603699B2 (ja) | 鋳型切り替え反応を用いるcDNA合成および単一細胞トランスクリプトームプロファイリングのための方法および組成物 | |
| US10711269B2 (en) | Method for making an asymmetrically-tagged sequencing library | |
| EP3252174B1 (en) | Compositions, methods, systems and kits for target nucleic acid enrichment | |
| KR102435352B1 (ko) | 리가제-연관 핵산 원형화 및 증폭 | |
| JP2022511255A (ja) | ライブラリー富化を改善するための組成物および方法 | |
| US20190169603A1 (en) | Compositions and Methods for Labeling Target Nucleic Acid Molecules | |
| CN115335536A (zh) | 用于即时核酸检测的组合物和方法 | |
| US8153401B2 (en) | Method for direct amplification from crude nucleic acid samples | |
| US20220380839A1 (en) | Methods and kits for depleting undesired nucleic acids | |
| EP3810805A1 (en) | Method for detection and quantification of genetic alterations | |
| JP2024545089A (ja) | Crisprエンドヌクレアーゼ切断産物を捕捉する方法 | |
| WO2001032932A2 (en) | Method of identifying a nucleic acid sequence | |
| JP2008178338A (ja) | 断片化核酸が混入する核酸試料中の標的核酸を増幅する核酸増幅方法、及びそのキット | |
| HK40075118B (en) | Methods for the multiplexed isothermal amplification of nucleic acid sequences |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| A621 | Written request for application examination |
Free format text: JAPANESE INTERMEDIATE CODE: A621 Effective date: 20160329 |
|
| A131 | Notification of reasons for refusal |
Free format text: JAPANESE INTERMEDIATE CODE: A131 Effective date: 20170228 |
|
| RD03 | Notification of appointment of power of attorney |
Free format text: JAPANESE INTERMEDIATE CODE: A7423 Effective date: 20170510 |
|
| RD04 | Notification of resignation of power of attorney |
Free format text: JAPANESE INTERMEDIATE CODE: A7424 Effective date: 20170511 |
|
| A521 | Request for written amendment filed |
Free format text: JAPANESE INTERMEDIATE CODE: A821 Effective date: 20170510 |
|
| A521 | Request for written amendment filed |
Free format text: JAPANESE INTERMEDIATE CODE: A523 Effective date: 20170530 |
|
| A02 | Decision of refusal |
Free format text: JAPANESE INTERMEDIATE CODE: A02 Effective date: 20170904 |
|
| A521 | Request for written amendment filed |
Free format text: JAPANESE INTERMEDIATE CODE: A523 Effective date: 20171228 |
|
| A521 | Request for written amendment filed |
Free format text: JAPANESE INTERMEDIATE CODE: A523 Effective date: 20180214 |
|
| A911 | Transfer to examiner for re-examination before appeal (zenchi) |
Free format text: JAPANESE INTERMEDIATE CODE: A911 Effective date: 20180215 |
|
| TRDD | Decision of grant or rejection written | ||
| A01 | Written decision to grant a patent or to grant a registration (utility model) |
Free format text: JAPANESE INTERMEDIATE CODE: A01 Effective date: 20180409 |
|
| A61 | First payment of annual fees (during grant procedure) |
Free format text: JAPANESE INTERMEDIATE CODE: A61 Effective date: 20180501 |
|
| R150 | Certificate of patent or registration of utility model |
Ref document number: 6336080 Country of ref document: JP Free format text: JAPANESE INTERMEDIATE CODE: R150 |
|
| R250 | Receipt of annual fees |
Free format text: JAPANESE INTERMEDIATE CODE: R250 |
|
| R250 | Receipt of annual fees |
Free format text: JAPANESE INTERMEDIATE CODE: R250 |
|
| R250 | Receipt of annual fees |
Free format text: JAPANESE INTERMEDIATE CODE: R250 |
|
| R250 | Receipt of annual fees |
Free format text: JAPANESE INTERMEDIATE CODE: R250 |
|
| R250 | Receipt of annual fees |
Free format text: JAPANESE INTERMEDIATE CODE: R250 |