JP2020528741A5 - - Google Patents
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- JP2020528741A5 JP2020528741A5 JP2019570956A JP2019570956A JP2020528741A5 JP 2020528741 A5 JP2020528741 A5 JP 2020528741A5 JP 2019570956 A JP2019570956 A JP 2019570956A JP 2019570956 A JP2019570956 A JP 2019570956A JP 2020528741 A5 JP2020528741 A5 JP 2020528741A5
- Authority
- JP
- Japan
- Prior art keywords
- index
- nucleic acid
- sequence
- sequences
- sample
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 150000007523 nucleic acids Chemical class 0.000 claims 88
- 238000012163 sequencing technique Methods 0.000 claims 36
- 102000039446 nucleic acids Human genes 0.000 claims 17
- 108020004707 nucleic acids Proteins 0.000 claims 17
- 238000000034 method Methods 0.000 claims 16
- 230000009977 dual effect Effects 0.000 claims 15
- 239000000758 substrate Substances 0.000 claims 6
- 239000002773 nucleotide Substances 0.000 claims 5
- 125000003729 nucleotide group Chemical group 0.000 claims 5
- 238000003491 array Methods 0.000 claims 4
- 230000000295 complement effect Effects 0.000 claims 3
- 239000012634 fragment Substances 0.000 claims 3
- 238000004519 manufacturing process Methods 0.000 claims 1
- 210000002784 stomach Anatomy 0.000 description 1
Priority Applications (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2022096601A JP2022126742A (ja) | 2017-11-06 | 2022-06-15 | 核酸インデックス付け技術 |
| JP2024164079A JP2024178329A (ja) | 2017-11-06 | 2024-09-20 | 核酸インデックス付け技術 |
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201762582175P | 2017-11-06 | 2017-11-06 | |
| US62/582,175 | 2017-11-06 | ||
| PCT/US2018/059255 WO2019090251A2 (en) | 2017-11-06 | 2018-11-05 | Nucleic acid indexing techniques |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2022096601A Division JP2022126742A (ja) | 2017-11-06 | 2022-06-15 | 核酸インデックス付け技術 |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2020528741A JP2020528741A (ja) | 2020-10-01 |
| JP2020528741A5 true JP2020528741A5 (https=) | 2021-07-29 |
| JP7091372B2 JP7091372B2 (ja) | 2022-06-27 |
Family
ID=64362766
Family Applications (3)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2019570956A Active JP7091372B2 (ja) | 2017-11-06 | 2018-11-05 | 核酸インデックス付け技術 |
| JP2022096601A Pending JP2022126742A (ja) | 2017-11-06 | 2022-06-15 | 核酸インデックス付け技術 |
| JP2024164079A Pending JP2024178329A (ja) | 2017-11-06 | 2024-09-20 | 核酸インデックス付け技術 |
Family Applications After (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2022096601A Pending JP2022126742A (ja) | 2017-11-06 | 2022-06-15 | 核酸インデックス付け技術 |
| JP2024164079A Pending JP2024178329A (ja) | 2017-11-06 | 2024-09-20 | 核酸インデックス付け技術 |
Country Status (12)
| Country | Link |
|---|---|
| US (2) | US11891600B2 (https=) |
| EP (2) | EP4289996B1 (https=) |
| JP (3) | JP7091372B2 (https=) |
| KR (2) | KR102735452B1 (https=) |
| CN (2) | CN118126816A (https=) |
| AU (2) | AU2018359670B2 (https=) |
| CA (2) | CA3067421C (https=) |
| DK (1) | DK3707723T3 (https=) |
| ES (1) | ES2966831T3 (https=) |
| FI (1) | FI3707723T3 (https=) |
| IL (2) | IL271239B2 (https=) |
| WO (1) | WO2019090251A2 (https=) |
Families Citing this family (21)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US11210554B2 (en) | 2019-03-21 | 2021-12-28 | Illumina, Inc. | Artificial intelligence-based generation of sequencing metadata |
| US11783917B2 (en) | 2019-03-21 | 2023-10-10 | Illumina, Inc. | Artificial intelligence-based base calling |
| US11593649B2 (en) | 2019-05-16 | 2023-02-28 | Illumina, Inc. | Base calling using convolutions |
| US11423306B2 (en) | 2019-05-16 | 2022-08-23 | Illumina, Inc. | Systems and devices for characterization and performance analysis of pixel-based sequencing |
| EP3836148A1 (en) * | 2019-12-09 | 2021-06-16 | Lexogen GmbH | Index sequences for multiplex parallel sequencing |
| US12592298B2 (en) | 2020-02-20 | 2026-03-31 | Illumina, Inc. | Hardware execution and acceleration of artificial intelligence-based base caller |
| CN121034400A (zh) | 2020-02-20 | 2025-11-28 | 因美纳有限公司 | 基于人工智能的多对多碱基判读 |
| US12354008B2 (en) | 2020-02-20 | 2025-07-08 | Illumina, Inc. | Knowledge distillation and gradient pruning-based compression of artificial intelligence-based base caller |
| US12591780B2 (en) | 2020-02-20 | 2026-03-31 | Illumina, Inc. | Data compression for artificial intelligence-based base calling |
| US20210265009A1 (en) | 2020-02-20 | 2021-08-26 | Illumina, Inc. | Artificial Intelligence-Based Base Calling of Index Sequences |
| KR102482668B1 (ko) * | 2020-03-10 | 2022-12-29 | 사회복지법인 삼성생명공익재단 | 고유 분자 식별자의 표지 정확도를 증진하는 방법 |
| US11248265B1 (en) | 2020-11-19 | 2022-02-15 | Clear Labs, Inc | Systems and processes for distinguishing pathogenic and non-pathogenic sequences from specimens |
| US12525320B2 (en) | 2021-03-16 | 2026-01-13 | Illumina, Inc. | Neural network parameter quantization for base calling |
| US12217829B2 (en) | 2021-04-15 | 2025-02-04 | Illumina, Inc. | Artificial intelligence-based analysis of protein three-dimensional (3D) structures |
| US12444482B2 (en) | 2021-04-15 | 2025-10-14 | Illumina, Inc. | Multi-channel protein voxelization to predict variant pathogenicity using deep convolutional neural networks |
| US12530882B2 (en) | 2021-07-01 | 2026-01-20 | Illumina, Inc. | Efficient artificial intelligence-based base calling of index sequences |
| US20230183799A1 (en) * | 2021-12-10 | 2023-06-15 | Illumina, Inc. | Parallel sample and index sequencing |
| CN114550819B (zh) * | 2022-01-28 | 2024-08-27 | 赛纳生物科技(北京)有限公司 | 简并测序的索引序列集的设计方法 |
| AU2023236924A1 (en) * | 2022-03-15 | 2024-10-24 | Illumina, Inc. | Paired-end sequencing |
| EP4602182A1 (en) * | 2022-10-13 | 2025-08-20 | Element Biosciences, Inc. | Separating sequencing data in parallel with a sequencing run in next generation sequencing data analysis |
| KR20250105398A (ko) * | 2022-11-25 | 2025-07-08 | 주식회사 씨젠 | 유기체 또는 host 추정 방법, 유기체 또는 host를 추정하는 모델의 획득 방법 및 이를 수행하는 컴퓨터 장치 |
Family Cites Families (39)
| Publication number | Priority date | Publication date | Assignee | Title |
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| US5846719A (en) | 1994-10-13 | 1998-12-08 | Lynx Therapeutics, Inc. | Oligonucleotide tags for sorting and identification |
| US5750341A (en) | 1995-04-17 | 1998-05-12 | Lynx Therapeutics, Inc. | DNA sequencing by parallel oligonucleotide extensions |
| JP2002503954A (ja) | 1997-04-01 | 2002-02-05 | グラクソ、グループ、リミテッド | 核酸増幅法 |
| US6969488B2 (en) | 1998-05-22 | 2005-11-29 | Solexa, Inc. | System and apparatus for sequential processing of analytes |
| US7001792B2 (en) | 2000-04-24 | 2006-02-21 | Eagle Research & Development, Llc | Ultra-fast nucleic acid sequencing device and a method for making and using the same |
| US7057026B2 (en) | 2001-12-04 | 2006-06-06 | Solexa Limited | Labelled nucleotides |
| WO2004018497A2 (en) | 2002-08-23 | 2004-03-04 | Solexa Limited | Modified nucleotides for polynucleotide sequencing |
| GB0321306D0 (en) | 2003-09-11 | 2003-10-15 | Solexa Ltd | Modified polymerases for improved incorporation of nucleotide analogues |
| EP1701785A1 (en) | 2004-01-07 | 2006-09-20 | Solexa Ltd. | Modified molecular arrays |
| WO2006064199A1 (en) | 2004-12-13 | 2006-06-22 | Solexa Limited | Improved method of nucleotide detection |
| EP1888743B1 (en) | 2005-05-10 | 2011-08-03 | Illumina Cambridge Limited | Improved polymerases |
| GB0514936D0 (en) | 2005-07-20 | 2005-08-24 | Solexa Ltd | Preparation of templates for nucleic acid sequencing |
| US7329860B2 (en) | 2005-11-23 | 2008-02-12 | Illumina, Inc. | Confocal imaging methods and apparatus |
| US7754429B2 (en) * | 2006-10-06 | 2010-07-13 | Illumina Cambridge Limited | Method for pair-wise sequencing a plurity of target polynucleotides |
| GB2457851B (en) | 2006-12-14 | 2011-01-05 | Ion Torrent Systems Inc | Methods and apparatus for measuring analytes using large scale fet arrays |
| US8349167B2 (en) | 2006-12-14 | 2013-01-08 | Life Technologies Corporation | Methods and apparatus for detecting molecular interactions using FET arrays |
| US8262900B2 (en) | 2006-12-14 | 2012-09-11 | Life Technologies Corporation | Methods and apparatus for measuring analytes using large scale FET arrays |
| JP4337919B2 (ja) | 2007-07-06 | 2009-09-30 | トヨタ自動車株式会社 | 設計支援装置、方法及びプログラム |
| US20100137143A1 (en) | 2008-10-22 | 2010-06-03 | Ion Torrent Systems Incorporated | Methods and apparatus for measuring analytes |
| WO2011100617A2 (en) | 2010-02-12 | 2011-08-18 | Life Technologies Corporation | Nucleic acid, biomolecule and polymer identifier codes |
| EP2580378A4 (en) | 2010-06-08 | 2014-01-01 | Nugen Technologies Inc | MULTIPLEX SEQUENCING METHODS AND COMPOSITION |
| US9080210B2 (en) * | 2010-06-09 | 2015-07-14 | Keygene N.V. | High throughput screening using combinatorial sequence barcodes |
| CA2859660C (en) | 2011-09-23 | 2021-02-09 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
| EP2807292B1 (en) | 2012-01-26 | 2019-05-22 | Tecan Genomics, Inc. | Compositions and methods for targeted nucleic acid sequence enrichment and high efficiency library generation |
| PT2828218T (pt) | 2012-03-20 | 2020-11-11 | Univ Washington Through Its Center For Commercialization | Métodos para baixar a taxa de erro da sequenciação paralela massiva de adn utilizando sequenciação duplex de consensus |
| CA2871505C (en) | 2012-04-24 | 2021-10-12 | Gen9, Inc. | Methods for sorting nucleic acids and multiplexed preparative in vitro cloning |
| AU2013267609C1 (en) | 2012-05-31 | 2019-01-03 | Board Of Regents, The University Of Texas System | Method for accurate sequencing of DNA |
| CN104838014B (zh) * | 2012-10-15 | 2017-06-30 | 生命技术公司 | 用于标靶核酸富集的组合物、方法、系统和试剂盒 |
| WO2014201273A1 (en) | 2013-06-12 | 2014-12-18 | The Broad Institute, Inc. | High-throughput rna-seq |
| US9208847B2 (en) | 2013-10-30 | 2015-12-08 | Taiwan Semiconductor Manufacturing Co., Ltd. | Memory devices with improved refreshing operations |
| EP3169799B1 (en) * | 2014-07-15 | 2019-09-04 | Qiagen Sciences, LLC | Semi-random barcodes for nucleic acid analysis |
| CA2957633A1 (en) | 2014-08-06 | 2016-02-11 | Nugen Technologies, Inc. | Digital measurements from targeted sequencing |
| US20160314242A1 (en) * | 2015-04-23 | 2016-10-27 | 10X Genomics, Inc. | Sample indexing methods and compositions for sequencing applications |
| US10844428B2 (en) * | 2015-04-28 | 2020-11-24 | Illumina, Inc. | Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS) |
| JP7064439B2 (ja) * | 2015-11-04 | 2022-05-10 | アトレカ インコーポレイテッド | 単一細胞に関連する核酸の解析のための、核酸バーコードの組み合わせセット |
| WO2017087873A1 (en) * | 2015-11-18 | 2017-05-26 | Wafergen, Inc. | Systems and methods for pooling samples from multi-well devices |
| CA3006792A1 (en) | 2015-12-08 | 2017-06-15 | Twinstrand Biosciences, Inc. | Improved adapters, methods, and compositions for duplex sequencing |
| SG11201906428SA (en) | 2017-01-18 | 2019-08-27 | Illumina Inc | Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths |
| IL269431B2 (en) | 2017-03-23 | 2025-05-01 | Univ Washington | Methods for targeted nucleic acid sequence enrichment with applications to error corrected nucleic acid sequencing |
-
2018
- 2018-11-05 CN CN202410305949.6A patent/CN118126816A/zh active Pending
- 2018-11-05 US US16/181,114 patent/US11891600B2/en active Active
- 2018-11-05 DK DK18804892.0T patent/DK3707723T3/da active
- 2018-11-05 CA CA3067421A patent/CA3067421C/en active Active
- 2018-11-05 FI FIEP18804892.0T patent/FI3707723T3/fi active
- 2018-11-05 KR KR1020237004940A patent/KR102735452B1/ko active Active
- 2018-11-05 AU AU2018359670A patent/AU2018359670B2/en active Active
- 2018-11-05 KR KR1020197036132A patent/KR102500210B1/ko active Active
- 2018-11-05 ES ES18804892T patent/ES2966831T3/es active Active
- 2018-11-05 EP EP23205539.2A patent/EP4289996B1/en active Active
- 2018-11-05 EP EP18804892.0A patent/EP3707723B1/en active Active
- 2018-11-05 JP JP2019570956A patent/JP7091372B2/ja active Active
- 2018-11-05 IL IL271239A patent/IL271239B2/en unknown
- 2018-11-05 CN CN201880043368.2A patent/CN110800064B/zh active Active
- 2018-11-05 CA CA3202587A patent/CA3202587A1/en active Pending
- 2018-11-05 IL IL313470A patent/IL313470B2/en unknown
- 2018-11-05 WO PCT/US2018/059255 patent/WO2019090251A2/en not_active Ceased
-
2021
- 2021-11-08 AU AU2021266189A patent/AU2021266189B2/en active Active
-
2022
- 2022-06-15 JP JP2022096601A patent/JP2022126742A/ja active Pending
-
2023
- 2023-12-15 US US18/542,058 patent/US20240117341A1/en active Pending
-
2024
- 2024-09-20 JP JP2024164079A patent/JP2024178329A/ja active Pending
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