JP2018509896A5 - - Google Patents

Download PDF

Info

Publication number
JP2018509896A5
JP2018509896A5 JP2017542907A JP2017542907A JP2018509896A5 JP 2018509896 A5 JP2018509896 A5 JP 2018509896A5 JP 2017542907 A JP2017542907 A JP 2017542907A JP 2017542907 A JP2017542907 A JP 2017542907A JP 2018509896 A5 JP2018509896 A5 JP 2018509896A5
Authority
JP
Japan
Prior art keywords
linker
barcode
umi
capture
nucleotide sequence
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
JP2017542907A
Other languages
English (en)
Japanese (ja)
Other versions
JP2018509896A (ja
Filing date
Publication date
Application filed filed Critical
Priority claimed from PCT/US2016/019952 external-priority patent/WO2016138490A1/en
Publication of JP2018509896A publication Critical patent/JP2018509896A/ja
Publication of JP2018509896A5 publication Critical patent/JP2018509896A5/ja
Pending legal-status Critical Current

Links

JP2017542907A 2015-02-27 2016-02-26 高処理能力研究用の単一細胞核酸 Pending JP2018509896A (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201562126349P 2015-02-27 2015-02-27
US62/126,349 2015-02-27
PCT/US2016/019952 WO2016138490A1 (en) 2015-02-27 2016-02-26 Single-cell nucleic acids for high-throughput studies

Publications (2)

Publication Number Publication Date
JP2018509896A JP2018509896A (ja) 2018-04-12
JP2018509896A5 true JP2018509896A5 (enExample) 2019-04-04

Family

ID=56789110

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2017542907A Pending JP2018509896A (ja) 2015-02-27 2016-02-26 高処理能力研究用の単一細胞核酸

Country Status (7)

Country Link
US (2) US10190163B2 (enExample)
EP (1) EP3262214B1 (enExample)
JP (1) JP2018509896A (enExample)
CN (1) CN107250445A (enExample)
CA (1) CA2976681A1 (enExample)
SG (1) SG11201706636PA (enExample)
WO (1) WO2016138490A1 (enExample)

Families Citing this family (46)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103952482A (zh) 2009-04-02 2014-07-30 弗卢伊蒂格姆公司 用于对目标核酸进行条形码化的多引物扩增方法
US8835358B2 (en) 2009-12-15 2014-09-16 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse labels
SG10201605049QA (en) 2011-05-20 2016-07-28 Fluidigm Corp Nucleic acid encoding reactions
US10466160B2 (en) 2011-08-01 2019-11-05 Celsee Diagnostics, Inc. System and method for retrieving and analyzing particles
CA2842359A1 (en) 2011-08-01 2013-02-07 Denovo Sciences Cell capture system and method of use
US9404864B2 (en) 2013-03-13 2016-08-02 Denovo Sciences, Inc. System for imaging captured cells
US9606102B2 (en) 2013-01-26 2017-03-28 Denovo Sciences, Inc. System and method for capturing and analyzing cells
US9707562B2 (en) 2013-03-13 2017-07-18 Denovo Sciences, Inc. System for capturing and analyzing cells
US9856535B2 (en) 2013-05-31 2018-01-02 Denovo Sciences, Inc. System for isolating cells
US10391490B2 (en) 2013-05-31 2019-08-27 Celsee Diagnostics, Inc. System and method for isolating and analyzing cells
CN107250445A (zh) 2015-02-27 2017-10-13 富鲁达公司 用于高通量研究的单个细胞核酸
CA3004310A1 (en) 2015-11-04 2017-05-11 Atreca, Inc. Combinatorial sets of nucleic acid barcodes for analysis of nucleic acids associated with single cells
CA3006994A1 (en) 2015-12-16 2017-06-22 Fluidigm Corporation High-level multiplex amplification
US10202641B2 (en) 2016-05-31 2019-02-12 Cellular Research, Inc. Error correction in amplification of samples
CN110312825A (zh) 2016-10-24 2019-10-08 吉内恩福赛克公司 隐藏核酸内存在的信息
CN110520541B (zh) * 2017-02-13 2024-03-26 耶鲁大学 高通量单细胞多组学
JP7536450B2 (ja) 2017-06-05 2024-08-20 ベクトン・ディキンソン・アンド・カンパニー 単一細胞用のサンプルインデックス付加
JP2020528740A (ja) * 2017-06-20 2020-10-01 プソマーゲン, インコーポレイテッドPsomagen, Inc. 固有分子識別子を用いてライブラリーを調製するための方法及びシステム
CN111295245B (zh) 2017-08-29 2021-03-16 伯乐实验室有限公司 用于分离和分析细胞的系统和方法
WO2019046564A1 (en) * 2017-08-30 2019-03-07 Kapa Biosystems, Inc. TRANSPOSASE COMPOSITIONS, PREPARATION METHODS, AND SCREENING METHODS
EP3755799A4 (en) * 2018-02-23 2021-12-08 Yale University LYSIS BY FREEZE-DEFROST OF A SINGLE CELL
CA3097976A1 (en) 2018-05-03 2019-11-07 Becton, Dickinson And Company High throughput multiomics sample analysis
WO2020036926A1 (en) 2018-08-17 2020-02-20 Cellecta, Inc. Multiplex preparation of barcoded gene specific dna fragments
EP3861134B1 (en) * 2018-10-01 2024-09-04 Becton, Dickinson and Company Determining 5' transcript sequences
CN113454234B (zh) 2019-02-14 2025-03-18 贝克顿迪金森公司 杂合体靶向和全转录物组扩增
US10633693B1 (en) 2019-04-16 2020-04-28 Celsee Diagnostics, Inc. System and method for leakage control in a particle capture system
JP7413408B2 (ja) 2019-05-07 2024-01-15 バイオ-ラッド ラボラトリーズ インコーポレイテッド 自動化された単一細胞処理のためのシステムおよび方法
US11273439B2 (en) 2019-05-07 2022-03-15 Bio-Rad Laboratories, Inc. System and method for target material retrieval from microwells
CN118291246A (zh) 2019-06-14 2024-07-05 伯乐实验室有限公司 用于自动化单细胞处理和分析的系统和方法
JP2022544101A (ja) * 2019-08-08 2022-10-17 アンスティチュ ナショナル ドゥ ラ サンテ エ ドゥ ラ ルシェルシュ メディカル 表現型の規定されたb細胞及びt細胞のサブセットにおける、b細胞とt細胞のトランスクリプトームの分析のためのrnaシークエンス法
WO2021046475A1 (en) * 2019-09-06 2021-03-11 10X Genomics, Inc. Systems and methods for barcoding cells and cell beads
EP4041916A4 (en) * 2019-10-11 2023-11-01 Blackhawk Genomics LLC IDENTIFICATION OF GENOMIC STRUCTURAL VARIANTS USING LONG READ SEQUENCING
EP4055160B1 (en) 2019-11-08 2024-04-10 Becton Dickinson and Company Using random priming to obtain full-length v(d)j information for immune repertoire sequencing
GB2589869A (en) * 2019-12-09 2021-06-16 Univ Oxford Innovation Ltd Method for whole genome sequencing of picogram quantities of DNA
US12445148B2 (en) * 2020-01-03 2025-10-14 Koninklijke Philips N.V. System and method for effective compression representation and decompression of diverse tabulated data
CN115279919A (zh) 2020-01-13 2022-11-01 贝克顿迪金森公司 使用含有du的寡核苷酸的细胞捕获
WO2021155057A1 (en) 2020-01-29 2021-08-05 Becton, Dickinson And Company Barcoded wells for spatial mapping of single cells through sequencing
US12153043B2 (en) 2020-02-25 2024-11-26 Becton, Dickinson And Company Bi-specific probes to enable the use of single-cell samples as single color compensation control
US11504719B2 (en) 2020-03-12 2022-11-22 Bio-Rad Laboratories, Inc. System and method for receiving and delivering a fluid for sample processing
WO2021231779A1 (en) 2020-05-14 2021-11-18 Becton, Dickinson And Company Primers for immune repertoire profiling
CN115803445A (zh) 2020-06-02 2023-03-14 贝克顿迪金森公司 用于5撇基因表达测定的寡核苷酸和珠
US11932901B2 (en) 2020-07-13 2024-03-19 Becton, Dickinson And Company Target enrichment using nucleic acid probes for scRNAseq
JP2023547732A (ja) * 2020-11-03 2023-11-13 エイシーティ・ジェノミックス(アイピー)リミテッド 遺伝子改変を検出するための標的化シークエンシング方法およびそのキット
CN116685850A (zh) 2020-12-15 2023-09-01 贝克顿迪金森公司 单细胞分泌组分析
US20240401026A1 (en) 2021-09-13 2024-12-05 Ecole Polytechnique Federale De Lausanne (Epfl) System and method for single cell phenotypical profiling and deterministic nanoliter-droplet encapsulation and deterministic droplet consortia assemblies
WO2023107539A1 (en) 2021-12-10 2023-06-15 Bio-Rad Laboratories, Inc. Compositions, methods, and systems for sample processing with morphology-adjustable functionalized particles

Family Cites Families (34)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5449602A (en) 1988-01-13 1995-09-12 Amoco Corporation Template-directed photoligation
US5494810A (en) 1990-05-03 1996-02-27 Cornell Research Foundation, Inc. Thermostable ligase-mediated DNA amplifications system for the detection of genetic disease
AU735440B2 (en) 1996-02-09 2001-07-05 Cornell Research Foundation Inc. Detection of nucleic acid sequence differences using the ligase detection reaction with addressable arrays
AU730633B2 (en) 1996-05-29 2001-03-08 Phillip Belgrader Detection of nucleic acid sequence differences using coupled ligase detection and polymerase chain reactions
US6312892B1 (en) 1996-07-19 2001-11-06 Cornell Research Foundation, Inc. High fidelity detection of nucleic acid differences by ligase detection reaction
US6770748B2 (en) 1997-03-07 2004-08-03 Takeshi Imanishi Bicyclonucleoside and oligonucleotide analogue
US6794499B2 (en) 1997-09-12 2004-09-21 Exiqon A/S Oligonucleotide analogues
US6027998A (en) 1997-12-17 2000-02-22 Advanced Micro Devices, Inc. Method for fully planarized conductive line for a stack gate
US6506594B1 (en) 1999-03-19 2003-01-14 Cornell Res Foundation Inc Detection of nucleic acid sequence differences using the ligase detection reaction with addressable arrays
US6262490B1 (en) 1999-11-05 2001-07-17 Advanced Semiconductor Engineering, Inc. Substrate strip for use in packaging semiconductor chips
WO2001092579A2 (en) 2000-05-30 2001-12-06 Pe Corporation (Ny) Methods for detecting target nucleic acids using coupled ligation and amplification
US6605451B1 (en) 2000-06-06 2003-08-12 Xtrana, Inc. Methods and devices for multiplexing amplification reactions
US7294503B2 (en) 2000-09-15 2007-11-13 California Institute Of Technology Microfabricated crossflow devices and methods
EP2703499A1 (en) 2005-06-02 2014-03-05 Fluidigm Corporation Analysis using microfluidic partitioning devices to generate single cell samples
US9440231B2 (en) 2007-08-14 2016-09-13 Fluidigm Corporation Polymer microfluidic biochip fabrication
US20110053806A1 (en) 2008-02-22 2011-03-03 Fluidigm Corporation Integrated carrier for microfluidic device
EP4047367A1 (en) 2008-07-18 2022-08-24 Bio-Rad Laboratories, Inc. Method for detecting target analytes with droplet libraries
WO2010027870A2 (en) 2008-08-26 2010-03-11 Fluidigm Corporation Assay methods for increased throughput of samples and/or targets
SG172965A1 (en) 2009-01-13 2011-08-29 Fluidigm Corp Single-cell nucleic acid analysis
WO2010088288A2 (en) 2009-01-28 2010-08-05 Fluidigm Corporation Determination of copy number differences by amplification
WO2010111231A1 (en) 2009-03-23 2010-09-30 Raindance Technologies, Inc. Manipulation of microfluidic droplets
US20120010091A1 (en) * 2009-03-30 2012-01-12 Illumina, Inc. Gene expression analysis in single cells
CN103952482A (zh) * 2009-04-02 2014-07-30 弗卢伊蒂格姆公司 用于对目标核酸进行条形码化的多引物扩增方法
US20100285537A1 (en) 2009-04-02 2010-11-11 Fluidigm Corporation Selective tagging of short nucleic acid fragments and selective protection of target sequences from degradation
SG185544A1 (en) 2010-05-14 2012-12-28 Fluidigm Corp Nucleic acid isolation methods
WO2011142836A2 (en) 2010-05-14 2011-11-17 Fluidigm Corporation Assays for the detection of genotype, mutations, and/or aneuploidy
SG10201605049QA (en) 2011-05-20 2016-07-28 Fluidigm Corp Nucleic acid encoding reactions
EP3285062B1 (en) 2012-02-29 2019-08-07 Fluidigm Corporation Methods, systems, and devices for multiple single-cell capturing and processing using microfluidics
CN104471077B (zh) 2012-05-21 2017-05-24 富鲁达公司 颗粒群的单颗粒分析
WO2014031954A1 (en) * 2012-08-23 2014-02-27 Tufts University Homopolymer mediated nucleic acid amplification
US20160122753A1 (en) * 2013-06-12 2016-05-05 Tarjei Mikkelsen High-throughput rna-seq
GB201317301D0 (en) 2013-09-30 2013-11-13 Linnarsson Sten Method for capturing and encoding nucleic acid from a plurality of single cells
CN107250445A (zh) 2015-02-27 2017-10-13 富鲁达公司 用于高通量研究的单个细胞核酸
CA3006994A1 (en) 2015-12-16 2017-06-22 Fluidigm Corporation High-level multiplex amplification

Similar Documents

Publication Publication Date Title
JP2018509915A5 (enExample)
EP3253491B1 (en) System and method for single cell genetic analysis
US10760123B2 (en) Sequential sequencing
JP2017532042A5 (enExample)
JP2014504153A5 (enExample)
US20150050657A1 (en) Targeted enrichment and amplification of nucleic acids on a support
HRP20161056T1 (hr) Metode za odabir i umnožavanje polinukleotida
US20170058342A1 (en) Materials and methods to analyze rna isoforms in transcriptomes
JP2020523034A5 (enExample)
CN108603224B (zh) 高水平多路复用扩增
JP2016512685A5 (enExample)
CN105861487A (zh) 用于靶向核酸序列富集和高效文库产生的组合物和方法
JP2007504831A5 (enExample)
EP2531610B1 (en) Complexitiy reduction method
HRP20201744T1 (hr) Novi postupci proizvodnje oligonukleotida
CN107250445A (zh) 用于高通量研究的单个细胞核酸
JP2011507488A5 (enExample)
JP2019523652A5 (enExample)
JP2016500275A5 (enExample)
JP2019514360A (ja) 超並列シークエンシングのためのdnaライブラリーを生成する方法及びキット
KR101600899B1 (ko) 초병렬적 핵산 합성법을 통한 dna 라이브러리의 동시 합성 방법
JP2023004952A5 (enExample)
JP2018518968A5 (enExample)
US20100016178A1 (en) Methods for rapid production of target double-stranded dna sequences
JP5163999B2 (ja) 類似植物体および生薬同定用dnaマイクロアレイ