JP2013527848A5 - - Google Patents

Download PDF

Info

Publication number
JP2013527848A5
JP2013527848A5 JP2013508222A JP2013508222A JP2013527848A5 JP 2013527848 A5 JP2013527848 A5 JP 2013527848A5 JP 2013508222 A JP2013508222 A JP 2013508222A JP 2013508222 A JP2013508222 A JP 2013508222A JP 2013527848 A5 JP2013527848 A5 JP 2013527848A5
Authority
JP
Japan
Prior art keywords
spot
substrate
field
spots
biochemical
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2013508222A
Other languages
English (en)
Japanese (ja)
Other versions
JP2013527848A (ja
JP5654668B2 (ja
Filing date
Publication date
Priority claimed from US13/092,618 external-priority patent/US8774494B2/en
Application filed filed Critical
Publication of JP2013527848A publication Critical patent/JP2013527848A/ja
Publication of JP2013527848A5 publication Critical patent/JP2013527848A5/ja
Application granted granted Critical
Publication of JP5654668B2 publication Critical patent/JP5654668B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2013508222A 2010-04-30 2011-04-27 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及びシステム Active JP5654668B2 (ja)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US33013010P 2010-04-30 2010-04-30
US61/330,130 2010-04-30
US13/092,618 US8774494B2 (en) 2010-04-30 2011-04-22 Method and system for accurate alignment and registration of array for DNA sequencing
US13/092,618 2011-04-22
PCT/US2011/034178 WO2011137183A1 (en) 2010-04-30 2011-04-27 Method and system for accurate alignment and registration of array for dna sequencing

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2014235627A Division JP6042859B2 (ja) 2010-04-30 2014-11-20 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置

Publications (3)

Publication Number Publication Date
JP2013527848A JP2013527848A (ja) 2013-07-04
JP2013527848A5 true JP2013527848A5 (cg-RX-API-DMAC7.html) 2014-07-17
JP5654668B2 JP5654668B2 (ja) 2015-01-14

Family

ID=44858300

Family Applications (2)

Application Number Title Priority Date Filing Date
JP2013508222A Active JP5654668B2 (ja) 2010-04-30 2011-04-27 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及びシステム
JP2014235627A Active JP6042859B2 (ja) 2010-04-30 2014-11-20 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置

Family Applications After (1)

Application Number Title Priority Date Filing Date
JP2014235627A Active JP6042859B2 (ja) 2010-04-30 2014-11-20 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置

Country Status (6)

Country Link
US (2) US8774494B2 (cg-RX-API-DMAC7.html)
EP (2) EP3043319A1 (cg-RX-API-DMAC7.html)
JP (2) JP5654668B2 (cg-RX-API-DMAC7.html)
CN (1) CN103025927B (cg-RX-API-DMAC7.html)
SG (1) SG184963A1 (cg-RX-API-DMAC7.html)
WO (1) WO2011137183A1 (cg-RX-API-DMAC7.html)

Families Citing this family (44)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105349647B (zh) 2007-10-30 2020-08-28 完整基因有限公司 用于核酸高通量测序的方法
US8774494B2 (en) 2010-04-30 2014-07-08 Complete Genomics, Inc. Method and system for accurate alignment and registration of array for DNA sequencing
US9880089B2 (en) 2010-08-31 2018-01-30 Complete Genomics, Inc. High-density devices with synchronous tracks for quad-cell based alignment correction
US9671344B2 (en) 2010-08-31 2017-06-06 Complete Genomics, Inc. High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging
KR102003660B1 (ko) 2011-07-13 2019-07-24 더 멀티플 마이얼로머 리서치 파운데이션, 인크. 데이터 수집 및 분배 방법
US9135497B2 (en) * 2012-01-27 2015-09-15 National Instruments Corporation Identifying randomly distributed microparticles in images to sequence a polynucleotide
US20130196880A1 (en) 2012-01-27 2013-08-01 Ventana Medical Systems, Inc. Patterned devices and methods for detecting analytes
US10829816B2 (en) 2012-11-19 2020-11-10 Apton Biosystems, Inc. Methods of analyte detection
AU2013344340B2 (en) 2012-11-19 2019-09-19 Pacific Biosciences Of California, Inc. Digital analysis of molecular analytes using single molecule detection
US9146248B2 (en) 2013-03-14 2015-09-29 Intelligent Bio-Systems, Inc. Apparatus and methods for purging flow cells in nucleic acid sequencing instruments
US9591268B2 (en) 2013-03-15 2017-03-07 Qiagen Waltham, Inc. Flow cell alignment methods and systems
US10088658B2 (en) * 2013-03-18 2018-10-02 General Electric Company Referencing in multi-acquisition slide imaging
EP2976434B1 (en) * 2013-03-18 2017-08-02 Life Technologies Corporation Methods and systems for analyzing biological reaction systems
EP4306650A3 (en) 2013-08-22 2024-03-27 Pacific Biosciences of California, Inc. Digital analysis of molecular analytes using electrical methods
US9519823B2 (en) * 2013-10-04 2016-12-13 The University Of Manchester Biomarker method
US9953417B2 (en) 2013-10-04 2018-04-24 The University Of Manchester Biomarker method
US10711294B2 (en) 2014-12-26 2020-07-14 Hitachi High-Tech Corporation Nucleic acid analysis device
JP2016174578A (ja) * 2015-03-20 2016-10-06 東ソー株式会社 微小粒子選別装置および前記装置を備えた微小粒子回収装置
US9330932B1 (en) * 2015-03-31 2016-05-03 Micron Technology, Inc. Methods of fabricating features associated with semiconductor substrates
CN109074640A (zh) * 2015-12-10 2018-12-21 凯杰有限公司 用于确定数字图像中至少一个对象的整体亮度的方法
JP6672938B2 (ja) * 2016-03-25 2020-03-25 横浜ゴム株式会社 周波数選択板の設計方法および周波数選択板設計プログラム
US10467749B2 (en) * 2016-10-10 2019-11-05 Genemind Biosciences Company Limited Method and system for processing an image comprising spots in nucleic acid sequencing
JP2020514746A (ja) * 2016-12-01 2020-05-21 ノーティラス バイオテクノロジー インコーポレイテッド タンパク質をアッセイする方法
WO2018170518A1 (en) 2017-03-17 2018-09-20 Apton Biosystems, Inc. Sequencing and high resolution imaging
WO2019133892A1 (en) 2017-12-29 2019-07-04 Ignite Biosciences, Inc. Decoding approaches for protein identification
KR102424222B1 (ko) 2017-11-13 2022-07-21 더 멀티플 마이얼로머 리서치 파운데이션, 인크. 통합된, 분자, 체학, 면역요법, 대사, 후성적, 및 임상 데이터베이스
JP7062926B2 (ja) * 2017-11-24 2022-05-09 凸版印刷株式会社 呈色反応検出システム、呈色反応検出方法及びプログラム
CN118864552A (zh) * 2018-04-10 2024-10-29 深圳华大智造科技股份有限公司 荧光图像配准方法、基因测序系统与基因测序仪
US11435283B2 (en) 2018-04-17 2022-09-06 Sharif University Of Technology Optically detecting mutations in a sequence of DNA
CN109035164B (zh) * 2018-07-13 2022-03-04 北京控制工程研究所 一种快速鲁棒图像杂光抑制的方法及系统
WO2020037570A1 (zh) * 2018-08-22 2020-02-27 深圳市真迈生物科技有限公司 图像配准方法、装置和计算机程序产品
WO2020061237A1 (en) 2018-09-19 2020-03-26 Apton Biosystems, Inc. Densely-packed analyte layers and detection methods
US20210348227A1 (en) * 2019-01-09 2021-11-11 Hitachi High-Tech Corporation Substrate for nucleic acid analysis, flow cell for nucleic acid analysis, and image analysis method
WO2020155043A1 (zh) * 2019-01-31 2020-08-06 深圳华大生命科学研究院 荧光图像配准方法、基因测序仪及系统、存储介质
CN114761992B (zh) * 2019-10-01 2023-08-08 10X基因组学有限公司 用于识别组织样品中的形态学模式的系统和方法
US12154266B2 (en) 2019-11-18 2024-11-26 10X Genomics, Inc. Systems and methods for binary tissue classification
AU2020386521A1 (en) 2019-11-22 2022-06-23 10X Genomics, Inc. Systems and methods for spatial analysis of analytes using fiducial alignment
WO2021163630A1 (en) 2020-02-13 2021-08-19 10X Genomics, Inc. Systems and methods for joint interactive visualization of gene expression and dna chromatin accessibility
CN111407222B (zh) * 2020-04-27 2024-11-29 重庆金山医疗技术研究院有限公司 一种电子内窥镜传像组件景深调试装置及调试方法
EP4053794A1 (en) * 2021-03-05 2022-09-07 Leica Microsystems CMS GmbH Multispectral microscope system and method for registering first and second images by means thereof
EP4181077A1 (en) * 2021-11-11 2023-05-17 Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. Method of evaluating at least one image of at least one micro-array
FR3133474B1 (fr) * 2022-03-11 2024-03-22 Aryballe Dispositif et procédé de caractérisation d’un alignement de caméra dans un capteur à puce photonique
EP4435717A1 (en) * 2023-03-24 2024-09-25 QIAGEN GmbH Method for providing an analysis of partition image data
CN119913026B (zh) * 2023-10-30 2025-12-02 迈克医疗电子有限公司 数字pcr仪及其通道微滴对齐方法

Family Cites Families (55)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4965188A (en) 1986-08-22 1990-10-23 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences using a thermostable enzyme
US4683202A (en) 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4683195A (en) 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4800159A (en) 1986-02-07 1989-01-24 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences
US6610256B2 (en) 1989-04-05 2003-08-26 Wisconsin Alumni Research Foundation Image processing and analysis of individual nucleic acid molecules
CA2020958C (en) 1989-07-11 2005-01-11 Daniel L. Kacian Nucleic acid sequence amplification methods
US5210015A (en) 1990-08-06 1993-05-11 Hoffman-La Roche Inc. Homogeneous assay system using the nuclease activity of a nucleic acid polymerase
US6401267B1 (en) 1993-09-27 2002-06-11 Radoje Drmanac Methods and compositions for efficient nucleic acid sequencing
US5854033A (en) 1995-11-21 1998-12-29 Yale University Rolling circle replication reporter systems
CA2591550C (en) 1996-06-04 2009-04-28 University Of Utah Research Foundation Monitoring hybridization during pcr
GB9620209D0 (en) 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
US6309824B1 (en) 1997-01-16 2001-10-30 Hyseq, Inc. Methods for analyzing a target nucleic acid using immobilized heterogeneous mixtures of oligonucleotide probes
WO1999019341A1 (en) 1997-10-10 1999-04-22 President & Fellows Of Harvard College Replica amplification of nucleic acid arrays
US6349144B1 (en) * 1998-02-07 2002-02-19 Biodiscovery, Inc. Automated DNA array segmentation and analysis
WO2000015779A2 (en) 1998-09-15 2000-03-23 Yale University Molecular cloning using rolling circle amplification
EP1144684B1 (en) 1999-01-06 2009-08-19 Callida Genomics, Inc. Enhanced sequencing by hybridization using pools of probes
GB9901475D0 (en) 1999-01-22 1999-03-17 Pyrosequencing Ab A method of DNA sequencing
US20020150909A1 (en) * 1999-02-09 2002-10-17 Stuelpnagel John R. Automated information processing in randomly ordered arrays
US6272207B1 (en) 1999-02-18 2001-08-07 Creatv Microtech, Inc. Method and apparatus for obtaining high-resolution digital X-ray and gamma ray images
US6544732B1 (en) 1999-05-20 2003-04-08 Illumina, Inc. Encoding and decoding of array sensors utilizing nanocrystals
DE60030436T2 (de) 1999-05-20 2007-03-29 Illumina, Inc., San Diego Vorrichtung zur halterung und präsentation von mindestens einer mikrokugelmatrix zu lösungen und/oder zu optischen abbildungssystemen
US6818395B1 (en) 1999-06-28 2004-11-16 California Institute Of Technology Methods and apparatus for analyzing polynucleotide sequences
US6754375B1 (en) 1999-07-16 2004-06-22 Packard Bioscience Company Method and system for interactively developing at least one grid pattern and computer-readable storage medium having a program for executing the method
EP1218543A2 (en) 1999-09-29 2002-07-03 Solexa Ltd. Polynucleotide sequencing
US6770441B2 (en) 2000-02-10 2004-08-03 Illumina, Inc. Array compositions and methods of making same
US6591196B1 (en) * 2000-06-06 2003-07-08 Agilent Technologies Inc. Method and system for extracting data from surface array deposited features
DE60117930T2 (de) * 2000-06-06 2006-10-05 Agilent Technologies Inc., A Delaware Corp., Palo Alto Verfahren und System zur automatischen Extraktion von Daten aus einem Molekülarray
CN1451230A (zh) * 2000-07-21 2003-10-22 纽约市哥伦比亚大学托管会 图象拼合方法与设备
WO2002035441A2 (en) * 2000-08-22 2002-05-02 Affymetrix, Inc. System method, and computer software product for controlling biological microarray scanner
US6873422B2 (en) * 2000-12-08 2005-03-29 Mitutoyo Corporation Systems and methods for high-accuracy displacement determination in a correlation based position transducer
US20020192650A1 (en) * 2001-05-30 2002-12-19 Amorese Douglas A. Composite arrays
US7157229B2 (en) 2002-01-31 2007-01-02 Nimblegen Systems, Inc. Prepatterned substrate for optical synthesis of DNA probes
US6982793B1 (en) 2002-04-04 2006-01-03 Nanometrics Incorporated Method and apparatus for using an alignment target with designed in offset
US6980677B2 (en) * 2002-05-24 2005-12-27 Niles Scientific, Inc. Method, system, and computer code for finding spots defined in biological microarrays
US20050049797A1 (en) 2003-08-27 2005-03-03 Srinka Ghosh Method and system for displacement-vector-based detection of zone misalignment in microarray data
US7323681B1 (en) * 2003-09-11 2008-01-29 Applera Corporation Image enhancement by sub-pixel imaging
WO2005082098A2 (en) 2004-02-27 2005-09-09 President And Fellows Of Harvard College Polony fluorescent in situ sequencing beads
US7072500B2 (en) 2004-05-07 2006-07-04 Wisconsin Alumni Research Foundation Image locking system for DNA micro-array synthesis
US20060024711A1 (en) 2004-07-02 2006-02-02 Helicos Biosciences Corporation Methods for nucleic acid amplification and sequence determination
WO2006073504A2 (en) 2004-08-04 2006-07-13 President And Fellows Of Harvard College Wobble sequencing
US7283677B2 (en) * 2004-08-31 2007-10-16 Hewlett-Packard Development Company, L.P. Measuring sub-wavelength displacements
CN101466847B (zh) 2005-06-15 2014-02-19 考利达基因组股份有限公司 用于遗传和化学分析的单分子阵列
SG170028A1 (en) 2006-02-24 2011-04-29 Callida Genomics Inc High throughput genome sequencing on dna arrays
WO2008070375A2 (en) * 2006-11-09 2008-06-12 Complete Genomics, Inc. Selection of dna adaptor orientation
CA2685714C (en) * 2007-05-31 2016-04-12 University Of Washington Inducible mutagenesis of target genes
US8617811B2 (en) * 2008-01-28 2013-12-31 Complete Genomics, Inc. Methods and compositions for efficient base calling in sequencing reactions
CN105349647B (zh) * 2007-10-30 2020-08-28 完整基因有限公司 用于核酸高通量测序的方法
JP5835680B2 (ja) * 2007-11-05 2015-12-24 株式会社東芝 画像位置合わせ装置
WO2009073629A2 (en) 2007-11-29 2009-06-11 Complete Genomics, Inc. Efficient shotgun sequencing methods
EP2279268A4 (en) * 2008-04-04 2011-12-07 Life Technologies Corp SCANNING SYSTEM AND METHOD OF IMAGING AND SEQUENCING
JP5451759B2 (ja) * 2008-07-15 2014-03-26 インスティチュート・パスツール・コリア 基板上の特徴を撮像する方法及び装置
US8774494B2 (en) 2010-04-30 2014-07-08 Complete Genomics, Inc. Method and system for accurate alignment and registration of array for DNA sequencing
US9671344B2 (en) * 2010-08-31 2017-06-06 Complete Genomics, Inc. High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging
US9880089B2 (en) 2010-08-31 2018-01-30 Complete Genomics, Inc. High-density devices with synchronous tracks for quad-cell based alignment correction
US8175452B1 (en) 2010-10-26 2012-05-08 Complete Genomics, Inc. Method and system for imaging high density biochemical arrays with sub-pixel alignment

Similar Documents

Publication Publication Date Title
JP2013527848A5 (cg-RX-API-DMAC7.html)
CN103025927B (zh) 精确地比对与配准用于dna测序的阵列的方法及系统
ATE527633T1 (de) Verfahren zum finden des korrelationsmaximums zum feststellen einer verschiebung durch bildkorrelation
GB2556824A (en) Camera calibration using synthetic images
WO2008063681A3 (en) Spatially patterned substrates for chemical and biological sensing
ATE477558T1 (de) Auf merkmalen basierende registrierung von schnittbildern
EA201201577A1 (ru) Способ использования данных изображения для конструирования изображения области заданного объекта
EP3098080A3 (en) Distance measuring device, image forming apparatus, distance measuring method, and computer-readable recording medium
ATE554721T1 (de) System zur durchführung von biopsien
JP2013185832A5 (cg-RX-API-DMAC7.html)
MX2021013907A (es) Matriz y método para la detección de información espacial de ácidos nucleicos.
DE602007004107D1 (de) Verfahren und system zum digitalisieren einer probe mit fluoreszenzzielpunkten
EP2472302A3 (de) Verfahren zur Korrektur von Bildverzeichnungen bei einem konfokalen Scan-Mikroskop
WO2011107302A3 (en) Imprint lithography
JP2012132749A5 (cg-RX-API-DMAC7.html)
JP2015231362A5 (cg-RX-API-DMAC7.html)
WO2018060523A3 (en) Computer device for detecting an optimal candidate compound and methods thereof
WO2009132655A3 (en) Design and use of sortilin specific molecular imaging ligands
JP2009534033A5 (cg-RX-API-DMAC7.html)
Thoms et al. Alignment verification for electron beam lithography
CN110288564B (zh) 基于功率谱分析的二值化散斑质量评价方法
ES2498790A1 (es) Procedimiento para la detección magneto-electroquímica sin lavados de un analito en una muestra
Gutierrez-Padilla et al. Simple scanner-based image analysis for corrosion testing: Concrete application
Ghorbani et al. Comparison of Whittaker and Modified-Whittaker plots to estimate species richness in semi-arid grassland and shrubland
MX374318B (es) Dispositivo de procesamiento de información, sistema, método de procesamiento de la información y medio de almacenamiento.