JP2004502441A5 - - Google Patents

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Publication number
JP2004502441A5
JP2004502441A5 JP2002508311A JP2002508311A JP2004502441A5 JP 2004502441 A5 JP2004502441 A5 JP 2004502441A5 JP 2002508311 A JP2002508311 A JP 2002508311A JP 2002508311 A JP2002508311 A JP 2002508311A JP 2004502441 A5 JP2004502441 A5 JP 2004502441A5
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JP
Japan
Prior art keywords
gene
oligonucleotides
oligonucleotide
microarray
polynucleotide
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Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Application number
JP2002508311A
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English (en)
Japanese (ja)
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JP2004502441A (ja
JP4175884B2 (ja
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Publication date
Priority claimed from US09/613,006 external-priority patent/US6913879B1/en
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Publication of JP2004502441A publication Critical patent/JP2004502441A/ja
Publication of JP2004502441A5 publication Critical patent/JP2004502441A5/ja
Application granted granted Critical
Publication of JP4175884B2 publication Critical patent/JP4175884B2/ja
Anticipated expiration legal-status Critical
Expired - Fee Related legal-status Critical Current

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JP2002508311A 2000-07-10 2001-07-03 複数の遺伝子座で複数のサンプルを遺伝子タイピングするマイクロアレイ方法 Expired - Fee Related JP4175884B2 (ja)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US09/613,006 US6913879B1 (en) 2000-07-10 2000-07-10 Microarray method of genotyping multiple samples at multiple LOCI
PCT/US2001/021163 WO2002003849A2 (en) 2000-07-10 2001-07-03 Microarray method of genotyping multiple samples at multiple loci

Publications (3)

Publication Number Publication Date
JP2004502441A JP2004502441A (ja) 2004-01-29
JP2004502441A5 true JP2004502441A5 (enExample) 2005-04-14
JP4175884B2 JP4175884B2 (ja) 2008-11-05

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ID=24455485

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2002508311A Expired - Fee Related JP4175884B2 (ja) 2000-07-10 2001-07-03 複数の遺伝子座で複数のサンプルを遺伝子タイピングするマイクロアレイ方法

Country Status (16)

Country Link
US (2) US6913879B1 (enExample)
EP (1) EP1343911B1 (enExample)
JP (1) JP4175884B2 (enExample)
KR (1) KR100756015B1 (enExample)
CN (1) CN100520401C (enExample)
AT (1) ATE363543T1 (enExample)
AU (2) AU1874002A (enExample)
CA (1) CA2414105C (enExample)
DE (1) DE60128720T2 (enExample)
IL (2) IL153848A0 (enExample)
IS (1) IS2651B (enExample)
NO (1) NO20030101L (enExample)
NZ (1) NZ523560A (enExample)
RU (1) RU2003103771A (enExample)
TW (1) TWI280282B (enExample)
WO (1) WO2002003849A2 (enExample)

Families Citing this family (81)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE10000001A1 (de) * 2000-01-01 2001-07-19 Agrobiogen Gmbh DNA-Matrizes und deren Verwendung zur Untersuchung von Individuen einer Population
US6913879B1 (en) * 2000-07-10 2005-07-05 Telechem International Inc. Microarray method of genotyping multiple samples at multiple LOCI
GB0208364D0 (en) * 2002-04-11 2002-05-22 Sec Dep For The Home Departmen Improvements in and relating to methods and apparatus for genotyping
WO2004044242A1 (en) * 2002-11-14 2004-05-27 John Nicholas Housby Polymorphism assay
US7097070B2 (en) 2003-08-15 2006-08-29 Protedyne Corporation Method and apparatus for handling small volume fluid samples
JP4458327B2 (ja) * 2003-08-28 2010-04-28 キヤノン株式会社 標的物質の定量方法および該方法に用いるプローブ担体
US7108979B2 (en) * 2003-09-03 2006-09-19 Agilent Technologies, Inc. Methods to detect cross-contamination between samples contacted with a multi-array substrate
WO2006054690A1 (ja) * 2004-11-19 2006-05-26 Shimadzu Corporation 遺伝子多型検出方法、診断方法、並びにそのための装置及び検査試薬キット
RU2348695C2 (ru) 2006-05-23 2009-03-10 Закрытое акционерное общество "Молекулярно-медицинские технологии" Дифференцирующий и специфический олигонуклеотиды для идентификации последовательностей днк инфекционных агентов в биологических материалах, способ видовой идентификации инфекционных агентов, биочип и набор для осуществления этого способа
GB0618514D0 (en) * 2006-09-20 2006-11-01 Univ Nottingham Trent Method of detecting interactions on a microarray using nuclear magnetic resonance
EP2099935B1 (en) * 2006-11-30 2014-02-26 The Regents Of The University Of California Array for detecting microbes
US9271455B2 (en) * 2007-05-31 2016-03-01 Monsanto Technology Llc Soybean polymorphisms and methods of genotyping
CA3024820C (en) 2007-08-29 2022-06-21 Monsanto Technology Llc Methods and compositions for breeding for preferred traits associated with goss' wilt resistance in plants
US20110053157A1 (en) 2008-02-01 2011-03-03 The General Hospital Corporation Use of microvesicles in diagnosis, prognosis and treatment of medical diseases and conditions
EP2271201B1 (en) 2008-04-24 2014-07-09 Monsanto Technology LLC A method to identify asian soybean rust resistance quantitative trait loci in soybean and compositions thereof
US9393566B2 (en) * 2008-06-23 2016-07-19 Canon U.S. Life Sciences, Inc. System and method for temperature referencing for melt curve data collection
US12129514B2 (en) 2009-04-30 2024-10-29 Molecular Loop Biosolutions, Llc Methods and compositions for evaluating genetic markers
CA2760439A1 (en) 2009-04-30 2010-11-04 Good Start Genetics, Inc. Methods and compositions for evaluating genetic markers
US20100299773A1 (en) * 2009-05-20 2010-11-25 Monsanto Technology Llc Methods and compositions for selecting an improved plant
JP5909444B2 (ja) 2009-07-16 2016-04-26 ザ ジェネラル ホスピタル コーポレイション 核酸分析
WO2011031892A1 (en) 2009-09-09 2011-03-17 The General Hospital Corporation Use of microvesicles in analyzing kras mutations
EP2475988B1 (en) 2009-09-09 2018-11-14 The General Hospital Corporation Use of microvesicles in analyzing nucleic acid profiles
US20140045915A1 (en) 2010-08-31 2014-02-13 The General Hospital Corporation Cancer-related biological materials in microvesicles
US20130295574A1 (en) 2010-11-10 2013-11-07 Exosome Diagnostics, Inc. Method for Isolation of Nucleic Acid Containing Particles and Extraction of Nucleic Acids Therefrom
US9163281B2 (en) 2010-12-23 2015-10-20 Good Start Genetics, Inc. Methods for maintaining the integrity and identification of a nucleic acid template in a multiplex sequencing reaction
US10172305B2 (en) 2011-04-29 2019-01-08 Monsanto Technology Llc Diagnostic molecular markers for seed lot purity traits in soybeans
WO2012155014A1 (en) 2011-05-11 2012-11-15 Exosome Diagnostics, Inc. Nucleic acid extraction from heterogeneous biological materials
EP3492606B1 (en) 2011-08-22 2023-10-04 Exosome Diagnostics, Inc. Urine biomarkers
ES2727672T3 (es) 2011-08-31 2019-10-17 Seminis Vegetable Seeds Inc Procedimientos y composiciones para la firmeza de la sandía
EP2768983A4 (en) 2011-10-17 2015-06-03 Good Start Genetics Inc METHODS OF IDENTIFYING MUTATIONS ASSOCIATED WITH DISEASES
US10174361B2 (en) 2011-11-10 2019-01-08 Exosome Diagnostics, Inc. Cerebrospinal fluid assay
CN108611398A (zh) 2012-01-13 2018-10-02 Data生物有限公司 通过新一代测序进行基因分型
US8209130B1 (en) 2012-04-04 2012-06-26 Good Start Genetics, Inc. Sequence assembly
US8812422B2 (en) 2012-04-09 2014-08-19 Good Start Genetics, Inc. Variant database
US10227635B2 (en) 2012-04-16 2019-03-12 Molecular Loop Biosolutions, Llc Capture reactions
CN104995311A (zh) 2012-08-30 2015-10-21 外来体诊断公司 用于核酸测定的对照
HK1217088A1 (zh) 2012-10-03 2016-12-23 Exosome Diagnostics, Inc. 微泡在医学疾病和病况的诊断、预後和治疗中的用途
WO2014074611A1 (en) 2012-11-07 2014-05-15 Good Start Genetics, Inc. Methods and systems for identifying contamination in samples
GB201220924D0 (en) 2012-11-21 2013-01-02 Cancer Res Inst Royal Materials and methods for determining susceptibility or predisposition to cancer
CA2892926C (en) * 2012-12-03 2023-02-21 Statens Serum Institut Method of diagnosing galactosemia in neonatal screening
US10314253B2 (en) 2012-12-04 2019-06-11 Seminis Vegetable Seeds, Inc. Methods and compositions for watermelon sex expression
EP2971159B1 (en) 2013-03-14 2019-05-08 Molecular Loop Biosolutions, LLC Methods for analyzing nucleic acids
US10294489B2 (en) 2013-03-15 2019-05-21 Board Of Trustees Of Southern Illinois University Soybean resistant to cyst nematodes
US8847799B1 (en) 2013-06-03 2014-09-30 Good Start Genetics, Inc. Methods and systems for storing sequence read data
US10059999B2 (en) 2013-06-10 2018-08-28 Monsanto Technology Llc Molecular markers associated with soybean tolerance to low iron growth conditions
CA2920429C (en) 2013-08-06 2021-11-16 Exosome Diagnostics, Inc. Urine biomarker cohorts, gene expression signatures, and methods of use thereof
NZ630628A (en) 2013-10-08 2015-04-24 Seminis Vegetable Seeds Inc Methods and compositions for peronospora resistance in spinach
US11041203B2 (en) 2013-10-18 2021-06-22 Molecular Loop Biosolutions, Inc. Methods for assessing a genomic region of a subject
US10851414B2 (en) 2013-10-18 2020-12-01 Good Start Genetics, Inc. Methods for determining carrier status
NZ784204A (en) 2013-11-27 2022-10-28 Seminis Vegetable Seeds Inc Disease resistance loci in onion
EP3632202B1 (en) 2014-02-21 2022-07-20 Syngenta Participations Ag Genetic loci associated with increased fertility in maize
NZ630710A (en) 2014-02-27 2016-03-31 Seminis Vegetable Seeds Inc Compositions and methods for peronospora resistance in spinach
US11053548B2 (en) 2014-05-12 2021-07-06 Good Start Genetics, Inc. Methods for detecting aneuploidy
US10316369B2 (en) 2014-06-27 2019-06-11 Seminis Vegetable Seeds, Inc. Methods and assays for male sterile watermelon
US20160048608A1 (en) 2014-08-15 2016-02-18 Good Start Genetics, Inc. Systems and methods for genetic analysis
US11408024B2 (en) 2014-09-10 2022-08-09 Molecular Loop Biosciences, Inc. Methods for selectively suppressing non-target sequences
EP3224595A4 (en) 2014-09-24 2018-06-13 Good Start Genetics, Inc. Process control for increased robustness of genetic assays
EP3005862A1 (en) 2014-10-10 2016-04-13 Seminis Vegetable Seeds, Inc. Melon plants with improved disease tolerance
WO2016112073A1 (en) 2015-01-06 2016-07-14 Good Start Genetics, Inc. Screening for structural variants
BR112017023275B1 (pt) 2015-04-28 2023-11-21 Monsanto Technology Llc Métodos para selecionar uma planta ou semente de milho braquítica
US10415101B2 (en) 2015-04-30 2019-09-17 Monsanto Technology Llc Methods for producing canola plants with clubroot resistance and compositions thereof
AU2016308049B2 (en) 2015-08-18 2022-03-17 Monsanto Technology Llc Methods for producing cotton plants with enhanced drought tolerance and compositions thereof
US10448595B2 (en) 2015-09-03 2019-10-22 Seminis Vegetable Seeds, Inc. Downy mildew resistant lettuce plants
WO2017044744A2 (en) 2015-09-10 2017-03-16 Monsanto Technology Llc Methods for producing corn plants with downy mildew resistance and compositions thereof
EP3389362A4 (en) 2015-12-18 2019-08-07 Monsanto Technology LLC METHOD FOR THE PRODUCTION OF PIPES WITH RESISTANCE TO THE NORTHIAN LEAF AND COMPOSITIONS THEREOF
SG11201809005TA (en) 2016-04-15 2018-11-29 Exosome Diagnostics Inc Plasma-based detection of anaplastic lymphoma kinase (alk) nucleic acids and alk fusion transcripts and uses thereof in diagnosis and treatment of cancer
AU2017263886B2 (en) 2016-05-13 2023-11-09 Exosome Diagnostics, Inc. Automated and manual methods for isolation of extracellular vesicles and co-isolation of cell-free DNA from biofluids
WO2018031874A1 (en) 2016-08-11 2018-02-15 Monsanto Technology Llc Methods and compositions for producing corn plants with resistance to late wilt
AU2017232187B2 (en) 2016-09-30 2023-11-09 Seminis Vegetable Seeds, Inc. Xanthomonas resistant brassica oleracea plants
EP3529374B1 (en) 2016-10-21 2024-04-03 Exosome Diagnostics, Inc. Sequencing and analysis of exosome associated nucleic acids
CN110446790B (zh) 2016-11-30 2023-03-31 外来体诊断公司 使用外来体rna和无细胞dna检测血浆中的突变的方法和组合物
WO2018126278A2 (en) 2017-01-02 2018-07-05 Exosome Diagnostics, Inc. Methods to distinguish rna and dna in a combined preparation
CN111133106A (zh) 2017-07-12 2020-05-08 外来体诊断公司 用于分离和富集生物流体来源的细胞外囊泡的方法及其使用方法
US11268102B2 (en) 2018-05-16 2022-03-08 University Of Florida Research Foundation, Incorporated Compositions and methods for identifying and selecting brachytic locus in solanaceae
EP3884045B1 (en) 2018-11-20 2023-01-11 Exosome Diagnostics, Inc. Methods for internal controls of microvesicle isolations
WO2020150144A1 (en) 2019-01-15 2020-07-23 Seminis Vegetable Seeds, Inc. Green bean plants with improved disease resistance
US11542513B2 (en) 2019-09-26 2023-01-03 Seminis Vegetable Seeds, Inc. Lettuce plants having resistance to Nasonovia ribisnigri biotype Nr:1
AU2021204717A1 (en) 2020-07-15 2022-02-03 Seminis Vegetable Seeds, Inc. Green Bean Plants with Improved Disease Resistance
US20230193310A1 (en) 2021-12-10 2023-06-22 Seminis Vegetabe Seeds, Inc. Lettuce plants having resistance to downy mildew
WO2023250288A2 (en) 2022-06-21 2023-12-28 Seminis Vegetable Seeds, Inc. Novel qtls conferring resistance to cucumber mosaic virus
WO2024215744A1 (en) 2023-04-14 2024-10-17 Seminis Vegetable Seeds, Inc. Methods and compositions for peronospora resistance in spinach

Family Cites Families (26)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4981783A (en) 1986-04-16 1991-01-01 Montefiore Medical Center Method for detecting pathological conditions
US6270961B1 (en) 1987-04-01 2001-08-07 Hyseq, Inc. Methods and apparatus for DNA sequencing and DNA identification
US5202231A (en) 1987-04-01 1993-04-13 Drmanac Radoje T Method of sequencing of genomes by hybridization of oligonucleotide probes
US5700637A (en) 1988-05-03 1997-12-23 Isis Innovation Limited Apparatus and method for analyzing polynucleotide sequences and method of generating oligonucleotide arrays
US5143854A (en) 1989-06-07 1992-09-01 Affymax Technologies N.V. Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof
US5800992A (en) * 1989-06-07 1998-09-01 Fodor; Stephen P.A. Method of detecting nucleic acids
US5925525A (en) 1989-06-07 1999-07-20 Affymetrix, Inc. Method of identifying nucleotide differences
US6040138A (en) 1995-09-15 2000-03-21 Affymetrix, Inc. Expression monitoring by hybridization to high density oligonucleotide arrays
AU4292893A (en) 1992-04-21 1993-11-18 Regents Of The University Of California, The Multicolor in situ hybridization methods for genetic testing
US5403708A (en) 1992-07-06 1995-04-04 Brennan; Thomas M. Methods and compositions for determining the sequence of nucleic acids
US5858659A (en) 1995-11-29 1999-01-12 Affymetrix, Inc. Polymorphism detection
US6045996A (en) 1993-10-26 2000-04-04 Affymetrix, Inc. Hybridization assays on oligonucleotide arrays
US5807522A (en) 1994-06-17 1998-09-15 The Board Of Trustees Of The Leland Stanford Junior University Methods for fabricating microarrays of biological samples
US5834181A (en) 1994-07-28 1998-11-10 Genzyme Corporation High throughput screening method for sequences or genetic alterations in nucleic acids
US5830645A (en) 1994-12-09 1998-11-03 The Regents Of The University Of California Comparative fluorescence hybridization to nucleic acid arrays
US5545531A (en) 1995-06-07 1996-08-13 Affymax Technologies N.V. Methods for making a device for concurrently processing multiple biological chip assays
US5958342A (en) 1996-05-17 1999-09-28 Incyte Pharmaceuticals, Inc. Jet droplet device
AU3568897A (en) 1996-06-07 1998-01-05 Eos Biotechnology, Inc. Immobilised linear oligonucleotide arrays
US5919626A (en) 1997-06-06 1999-07-06 Orchid Bio Computer, Inc. Attachment of unmodified nucleic acids to silanized solid phase surfaces
US6013449A (en) 1997-11-26 2000-01-11 The United States Of America As Represented By The Department Of Health And Human Services Probe-based analysis of heterozygous mutations using two-color labelling
US6232066B1 (en) 1997-12-19 2001-05-15 Neogen, Inc. High throughput assay system
US6238869B1 (en) 1997-12-19 2001-05-29 High Throughput Genomics, Inc. High throughput assay system
AU6163399A (en) 1998-09-25 2000-04-17 Massachusetts Institute Of Technology Methods and products related to genotyping and dna analysis
US6268147B1 (en) * 1998-11-02 2001-07-31 Kenneth Loren Beattie Nucleic acid analysis using sequence-targeted tandem hybridization
DE60136335D1 (de) * 2000-02-16 2008-12-11 Illumina Inc Parallele genotypisierung mehrerer patientenproben
US6913879B1 (en) * 2000-07-10 2005-07-05 Telechem International Inc. Microarray method of genotyping multiple samples at multiple LOCI

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