DK3108006T3 - SINGLE-STRENGTHED OIGONUCLEOTIDE PRINCIPLES FOR CHROMOSOME OR RE-COPY COUNTING - Google Patents

SINGLE-STRENGTHED OIGONUCLEOTIDE PRINCIPLES FOR CHROMOSOME OR RE-COPY COUNTING Download PDF

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Publication number
DK3108006T3
DK3108006T3 DK15705997.3T DK15705997T DK3108006T3 DK 3108006 T3 DK3108006 T3 DK 3108006T3 DK 15705997 T DK15705997 T DK 15705997T DK 3108006 T3 DK3108006 T3 DK 3108006T3
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Denmark
Prior art keywords
probe
her2
probes
hybridization
chr17
Prior art date
Application number
DK15705997.3T
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Danish (da)
English (en)
Inventor
Michael Farrell
Antony Hubbard
Donald Johnson
Brian D Kelly
Taylor Shingler
Lei Tang
Wenjun Zhang
Original Assignee
Ventana Med Syst Inc
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Publication date
Application filed by Ventana Med Syst Inc filed Critical Ventana Med Syst Inc
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Publication of DK3108006T3 publication Critical patent/DK3108006T3/en

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6841In situ hybridisation
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Hospice & Palliative Care (AREA)
  • Oncology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
DK15705997.3T 2014-02-21 2015-02-20 SINGLE-STRENGTHED OIGONUCLEOTIDE PRINCIPLES FOR CHROMOSOME OR RE-COPY COUNTING DK3108006T3 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201461943196P 2014-02-21 2014-02-21
US201462094543P 2014-12-19 2014-12-19
PCT/EP2015/053555 WO2015124702A1 (en) 2014-02-21 2015-02-20 Single-stranded oligonucleotide probes for chromosome or gene copy enumeration

Publications (1)

Publication Number Publication Date
DK3108006T3 true DK3108006T3 (en) 2018-10-15

Family

ID=52574155

Family Applications (1)

Application Number Title Priority Date Filing Date
DK15705997.3T DK3108006T3 (en) 2014-02-21 2015-02-20 SINGLE-STRENGTHED OIGONUCLEOTIDE PRINCIPLES FOR CHROMOSOME OR RE-COPY COUNTING

Country Status (8)

Country Link
US (3) US10752955B2 (enExample)
EP (1) EP3108006B1 (enExample)
JP (2) JP6982392B2 (enExample)
AU (1) AU2015220749B2 (enExample)
CA (1) CA2940111C (enExample)
DK (1) DK3108006T3 (enExample)
ES (1) ES2689568T3 (enExample)
WO (1) WO2015124702A1 (enExample)

Families Citing this family (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2016050913A2 (en) * 2014-10-02 2016-04-07 Ventana Medical Systems, Inc. Polymers and conjugates comprising the same
US11691141B2 (en) 2017-11-13 2023-07-04 Roche Sequencing Solutions, Inc. Devices for sample analysis using epitachophoresis
WO2020074742A1 (en) 2018-10-12 2020-04-16 F. Hoffmann-La Roche Ag Detection methods for epitachophoresis workflow automation
WO2020229437A1 (en) 2019-05-14 2020-11-19 F. Hoffmann-La Roche Ag Devices and methods for sample analysis
CN111411146B (zh) * 2020-03-31 2024-01-16 宜昌美光硅谷生命科技股份有限公司 一种检测和定量单拷贝染色体外dna或rna的方法
CN112795649A (zh) * 2021-01-05 2021-05-14 武汉友芝友医疗科技股份有限公司 一种用于检测her2基因扩增水平的探针组及其应用
CN114214318A (zh) * 2021-11-30 2022-03-22 广州康立明生物科技股份有限公司 一种染色体着丝粒探针
EP4677328A1 (en) 2023-04-13 2026-01-14 Ventana Medical Systems, Inc. Proliferation assay for fixed solid tumors
WO2025193604A1 (en) 2024-03-11 2025-09-18 Ventana Medical Systems, Inc. Non-enzymatic dissociation of ffpe tissue and generation of single cells with intact cell surface markers

Family Cites Families (18)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5447841A (en) 1986-01-16 1995-09-05 The Regents Of The Univ. Of California Methods for chromosome-specific staining
EP0511750A1 (en) * 1991-04-09 1992-11-04 The Regents Of The University Of California Repeat sequence chromosome specific nucleic acid probes
US5750340A (en) * 1995-04-07 1998-05-12 University Of New Mexico In situ hybridization solution and process
US6046004A (en) 1997-02-27 2000-04-04 Lorne Park Research, Inc. Solution hybridization of nucleic acids with antisense probes having modified backbones
US6573043B1 (en) * 1998-10-07 2003-06-03 Genentech, Inc. Tissue analysis and kits therefor
AU3087801A (en) * 2000-02-04 2001-08-14 Molecular Dynamics Inc Human genome-derived single exon nucleic acid probes useful for analysis of geneexpression in human breast and hbl 100 cells
US20030017491A1 (en) 2000-09-14 2003-01-23 Zuo-Rong Shi Chromogenic in situ hybridization methods, kits, and compositions
US20020160401A1 (en) 2001-03-29 2002-10-31 Yasuyuki Nozaki Biochip and method of designing probes
JP2002296279A (ja) * 2001-03-29 2002-10-09 Hitachi Software Eng Co Ltd バイオチップ及びプローブ設計方法
EP1989329A2 (en) * 2006-01-25 2008-11-12 Board of Regents, The University of Texas System Detection and diagnosis of smoking related cancers
US7807356B2 (en) 2006-03-09 2010-10-05 Agilent Technologies, Inc. Labeled nucleotide composition
JP5126644B2 (ja) * 2006-05-31 2013-01-23 独立行政法人産業技術総合研究所 遺伝子発現プロファイルを用いた漢方薬の評価法
US20080299555A1 (en) * 2007-05-30 2008-12-04 Hiroaki Nitta Multicolor chromogenic detection of biomarkers
AU2009293380B2 (en) * 2008-09-16 2016-05-19 Novartis Ag Reproducible quantification of biomarker expression
CA2769302C (en) 2009-07-30 2018-10-16 F. Hoffmann-La Roche Ag A set of oligonucleotide probes as well as methods and uses related thereto
DK2627780T3 (en) * 2010-10-12 2018-06-06 Univ Bruxelles BACH2 REPRESSION IN CELLS
WO2012170715A1 (en) * 2011-06-07 2012-12-13 Caris Mpi, Inc. Molecular profiling for cancer
US10510435B2 (en) * 2013-04-30 2019-12-17 California Institute Of Technology Error correction of multiplex imaging analysis by sequential hybridization

Also Published As

Publication number Publication date
JP2020089374A (ja) 2020-06-11
JP6982392B2 (ja) 2021-12-17
CA2940111A1 (en) 2015-08-27
JP2017511698A (ja) 2017-04-27
US20210002726A1 (en) 2021-01-07
US11788149B2 (en) 2023-10-17
EP3108006B1 (en) 2018-08-01
AU2015220749B2 (en) 2020-12-24
US20170009305A1 (en) 2017-01-12
US10752955B2 (en) 2020-08-25
US20240084395A1 (en) 2024-03-14
CA2940111C (en) 2022-03-15
AU2015220749A1 (en) 2016-07-07
WO2015124702A1 (en) 2015-08-27
EP3108006A1 (en) 2016-12-28
ES2689568T3 (es) 2018-11-14

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