DE69631787T2 - Verfahren zum screening enzymatischer aktivität - Google Patents

Verfahren zum screening enzymatischer aktivität Download PDF

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Publication number
DE69631787T2
DE69631787T2 DE69631787T DE69631787T DE69631787T2 DE 69631787 T2 DE69631787 T2 DE 69631787T2 DE 69631787 T DE69631787 T DE 69631787T DE 69631787 T DE69631787 T DE 69631787T DE 69631787 T2 DE69631787 T2 DE 69631787T2
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DE
Germany
Prior art keywords
dna
library
activity
enzyme
population
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
DE69631787T
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German (de)
English (en)
Other versions
DE69631787D1 (de
Inventor
M. Jay SHORT
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
BASF Enzymes LLC
Original Assignee
Diversa Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US08/651,568 external-priority patent/US5939250A/en
Application filed by Diversa Corp filed Critical Diversa Corp
Application granted granted Critical
Publication of DE69631787D1 publication Critical patent/DE69631787D1/de
Publication of DE69631787T2 publication Critical patent/DE69631787T2/de
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

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Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1086Preparation or screening of expression libraries, e.g. reporter assays
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1058Directional evolution of libraries, e.g. evolution of libraries is achieved by mutagenesis and screening or selection of mixed population of organisms
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/24Hydrolases (3) acting on glycosyl compounds (3.2)
    • C12N9/2402Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1)
    • C12N9/2405Glucanases
    • C12N9/2434Glucanases acting on beta-1,4-glucosidic bonds
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6811Selection methods for production or design of target specific oligonucleotides or binding molecules
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y301/00Hydrolases acting on ester bonds (3.1)
    • C12Y301/03Phosphoric monoester hydrolases (3.1.3)
    • C12Y301/03001Alkaline phosphatase (3.1.3.1)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y302/00Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
    • C12Y302/01Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
    • C12Y302/01021Beta-glucosidase (3.2.1.21)

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biochemistry (AREA)
  • Biomedical Technology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Medicinal Chemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Ecology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Enzymes And Modification Thereof (AREA)
DE69631787T 1995-12-07 1996-12-06 Verfahren zum screening enzymatischer aktivität Expired - Lifetime DE69631787T2 (de)

Applications Claiming Priority (11)

Application Number Priority Date Filing Date Title
US831795P 1995-12-07 1995-12-07
US831195P 1995-12-07 1995-12-07
US831695P 1995-12-07 1995-12-07
US8316P 1995-12-07
US8317P 1995-12-07
US8311P 1995-12-07
US651568 1996-05-22
US08/651,568 US5939250A (en) 1995-12-07 1996-05-22 Production of enzymes having desired activities by mutagenesis
US692002 1996-08-02
US08/692,002 US6054267A (en) 1995-12-07 1996-08-02 Method for screening for enzyme activity
PCT/US1996/019457 WO1997020918A1 (en) 1995-12-07 1996-12-06 Method of screening for enzyme activity

Publications (2)

Publication Number Publication Date
DE69631787D1 DE69631787D1 (de) 2004-04-08
DE69631787T2 true DE69631787T2 (de) 2005-03-10

Family

ID=27533271

Family Applications (1)

Application Number Title Priority Date Filing Date
DE69631787T Expired - Lifetime DE69631787T2 (de) 1995-12-07 1996-12-06 Verfahren zum screening enzymatischer aktivität

Country Status (8)

Country Link
EP (2) EP0866853B1 (enExample)
JP (2) JP2000501606A (enExample)
AT (1) ATE260987T1 (enExample)
AU (1) AU720334B2 (enExample)
CA (1) CA2239686A1 (enExample)
DE (1) DE69631787T2 (enExample)
IL (1) IL124794A (enExample)
WO (1) WO1997020918A1 (enExample)

Families Citing this family (22)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6335160B1 (en) 1995-02-17 2002-01-01 Maxygen, Inc. Methods and compositions for polypeptide engineering
US6004788A (en) 1995-07-18 1999-12-21 Diversa Corporation Enzyme kits and libraries
US20030215798A1 (en) * 1997-06-16 2003-11-20 Diversa Corporation High throughput fluorescence-based screening for novel enzymes
DK1469066T3 (da) * 1996-01-11 2008-07-28 Verenium Corp Endoglucanase fra Thermotoga
JP2002509425A (ja) * 1996-01-11 2002-03-26 ディベルサ コーポレーション グリコシダーゼ酵素
US6242211B1 (en) 1996-04-24 2001-06-05 Terragen Discovery, Inc. Methods for generating and screening novel metabolic pathways
US7465571B1 (en) 1996-05-22 2008-12-16 Verenium Corporation Endoglucanases
US5789228A (en) * 1996-05-22 1998-08-04 Diversa Corporation Endoglucanases
US7279316B2 (en) 1996-12-06 2007-10-09 Verenium Corporation Enzymes having glycosidase activity and methods of use thereof
EP1027367B1 (en) 1996-12-06 2005-05-18 Diversa Corporation Glycosidase enzymes
WO1998059075A1 (en) * 1997-06-25 1998-12-30 Life Technologies, Inc. Improved method for isolating and recovering target dna or rna molecules having a desired nucleotide sequence
DE19731990A1 (de) * 1997-07-25 1999-01-28 Studiengesellschaft Kohle Mbh Verfahren zur Herstellung und Identifizierung von neuen Hydrolasen mit verbesserten Eigenschaften
US6261842B1 (en) 1997-10-23 2001-07-17 Wisconsin Alumni Research Foundation Microorganism genomics, compositions and methods related thereto
MXPA00011569A (es) * 1999-03-26 2004-12-03 Diversa Corp Re-ensamble de acidos nucleicos mediado por exonucleasa en evolucion dirigida.
JP2003521934A (ja) 2000-02-09 2003-07-22 ジェンベク、インコーポレイティッド ウイルスベクターライブラリーの製造および使用方法
AU2001278872A1 (en) 2000-07-06 2002-01-21 Genvec, Inc. Method of identifying a binding partner of a gene product
JP4114075B2 (ja) * 2004-02-16 2008-07-09 ヒューマン・メタボローム・テクノロジーズ株式会社 遺伝子産物の機能同定方法及び結合物質同定方法
US20050221339A1 (en) * 2004-03-31 2005-10-06 Medical Research Council Harvard University Compartmentalised screening by microfluidic control
JP4568571B2 (ja) * 2004-10-06 2010-10-27 ユニバーサル・バイオ・リサーチ株式会社 熱安定性又は熱活性dnaポリメラーゼ及びそれをコードするdna
DK2406399T3 (en) 2009-03-09 2018-03-12 Bioatla Llc MIRAC PROTEINS
EP3435087B1 (en) * 2010-07-16 2023-11-08 BioAtla, Inc. Novel methods of protein evolution
CN109508300B (zh) * 2018-11-22 2022-07-05 广州爱云信息技术有限公司 一种磁盘碎片整理方法、设备及计算机可读存储介质

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPS63502636A (ja) * 1985-12-17 1988-10-06 ルブリゾル ジエネテイクス,インコ−ポレイテツド ポリケチド抗生物質生合成用遺伝子の単離
ATE157702T1 (de) * 1990-02-07 1997-09-15 Abbott Lab Alkalische phosphatase mit verbesserter spezifischer aktivität zur verwendung in indikatorreagenzien
US5352778A (en) * 1990-04-26 1994-10-04 New England Biolabs, Inc. Recombinant thermostable DNA polymerase from archaebacteria
DK0548228T3 (da) * 1990-09-13 1999-05-10 Novo Nordisk As Lipasevarianter
EP0547920B1 (en) * 1991-12-18 2002-02-27 New England Biolabs, Inc. Recombinant thermostable DNA polymerase from archaebacteria
US5958672A (en) * 1995-07-18 1999-09-28 Diversa Corporation Protein activity screening of clones having DNA from uncultivated microorganisms

Also Published As

Publication number Publication date
WO1997020918A1 (en) 1997-06-12
EP0866853B1 (en) 2004-03-03
JP2001078786A (ja) 2001-03-27
EP0866853A4 (en) 1999-09-22
JP2000501606A (ja) 2000-02-15
EP1130090A2 (en) 2001-09-05
IL124794A0 (en) 1999-01-26
EP1130090A3 (en) 2003-11-26
AU1148997A (en) 1997-06-27
DE69631787D1 (de) 2004-04-08
EP0866853A1 (en) 1998-09-30
IL124794A (en) 2008-06-05
CA2239686A1 (en) 1997-06-12
AU720334B2 (en) 2000-05-25
ATE260987T1 (de) 2004-03-15

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Owner name: VERENIUM CORP. (N.D.GES.D. STAATES DELAWARE), , US

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