CN113166809A - 一种dna甲基化检测的方法、试剂盒、装置和应用 - Google Patents
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Abstract
本申请提供了一种DNA甲基化检测的方法,包括长片段DNA处理步骤,将长片段DNA打断;常规文库构建步骤,用stLFR技术建库;双链保护步骤,取回收的stLFR文库,DNA变性,用退火或延伸方法将分子标签或接头序列转化为双链;重亚硫酸盐转化步骤,加入双链保护剂和重亚硫酸盐,进行脱氨基;甲基化测序文库构建步骤,对脱氨基产物进行常规PCR或环化后滚环扩增,得到甲基化测序文库;甲基化测序步骤,对甲基化测序文库测序,根据测序结果分析基因的甲基化信息;本申请还提供了相应试剂盒、装置和应用。本申请方法利用stLFR技术,获得长片段甲基化信息;通过双链保护策略,可事先加入分子标签序列建库,可有效追踪分子来源。
Description
PCT国内申请,说明书已公开。
Claims (23)
- PCT国内申请,权利要求书已公开。
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PCT/CN2019/127537 WO2020135347A1 (zh) | 2018-12-29 | 2019-12-23 | 一种dna甲基化检测的方法、试剂盒、装置和应用 |
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Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2023082251A1 (zh) * | 2021-11-15 | 2023-05-19 | 深圳华大智造科技股份有限公司 | 一种基于标签序列和链置换的全基因组甲基建库测序方法 |
CN116343919A (zh) * | 2023-04-11 | 2023-06-27 | 天津大学四川创新研究院 | 一种全基因组图谱绘制测序方法 |
Citations (14)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN102409042A (zh) * | 2010-09-21 | 2012-04-11 | 深圳华大基因科技有限公司 | 一种高通量基因组甲基化dna富集方法及其所使用标签和标签接头 |
CN102796808A (zh) * | 2011-05-23 | 2012-11-28 | 深圳华大基因科技有限公司 | 甲基化高通量检测方法 |
CN103088433A (zh) * | 2011-11-02 | 2013-05-08 | 深圳华大基因科技有限公司 | 全基因组甲基化高通量测序文库的构建方法及其应用 |
CN104372079A (zh) * | 2014-10-24 | 2015-02-25 | 中国科学院遗传与发育生物学研究所 | 一种甲基化dna的测序方法及其应用 |
CN104711250A (zh) * | 2015-01-26 | 2015-06-17 | 北京百迈客生物科技有限公司 | 一种长片段核酸文库的构建方法 |
CN104894233A (zh) * | 2015-04-22 | 2015-09-09 | 上海昂朴生物科技有限公司 | 一种多样本多片段dna甲基化高通量测序方法 |
CN105002567A (zh) * | 2015-06-30 | 2015-10-28 | 北京百迈客生物科技有限公司 | 无参考基因组高通量简化甲基化测序文库的构建方法 |
US20170120213A1 (en) * | 2007-12-05 | 2017-05-04 | Complete Genomics, Inc. | Methods of preparing a library of nucleic acid fragments tagged with oligonucleotide bar code sequences |
CN106755319A (zh) * | 2016-11-24 | 2017-05-31 | 广州市基准医疗有限责任公司 | 甲基化dna检测方法 |
CN107002153A (zh) * | 2015-02-04 | 2017-08-01 | 深圳华大基因研究院 | 一种构建长片段测序文库的方法 |
US20170218458A1 (en) * | 2016-02-03 | 2017-08-03 | AnchorDx Medical Co.,Ltd. | Method for Detecting Methylated DNA |
CN107267596A (zh) * | 2009-06-15 | 2017-10-20 | 考利达基因组股份有限公司 | 用于长片段阅读测序的方法和组合物 |
CN107904669A (zh) * | 2018-01-02 | 2018-04-13 | 华中农业大学 | 一种单细胞甲基化测序文库的构建方法及其应用 |
CN107937985A (zh) * | 2017-10-25 | 2018-04-20 | 人和未来生物科技(长沙)有限公司 | 一种微量碎片化dna甲基化检测文库的构建方法和检测方法 |
Family Cites Families (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN102409408B (zh) * | 2010-09-21 | 2013-08-07 | 深圳华大基因科技服务有限公司 | 一种利用微量基因组dna进行全基因组甲基化位点精确检测的方法 |
CN103233072B (zh) * | 2013-05-06 | 2014-07-02 | 中国海洋大学 | 一种高通量全基因组dna甲基化检测技术 |
US20210130879A1 (en) * | 2017-03-24 | 2021-05-06 | The Johns Hopkins University | Strand-specific detection of bisulfite-converted duplexes |
-
2019
- 2019-12-23 WO PCT/CN2019/127537 patent/WO2020135347A1/zh active Application Filing
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Patent Citations (14)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20170120213A1 (en) * | 2007-12-05 | 2017-05-04 | Complete Genomics, Inc. | Methods of preparing a library of nucleic acid fragments tagged with oligonucleotide bar code sequences |
CN107267596A (zh) * | 2009-06-15 | 2017-10-20 | 考利达基因组股份有限公司 | 用于长片段阅读测序的方法和组合物 |
CN102409042A (zh) * | 2010-09-21 | 2012-04-11 | 深圳华大基因科技有限公司 | 一种高通量基因组甲基化dna富集方法及其所使用标签和标签接头 |
CN102796808A (zh) * | 2011-05-23 | 2012-11-28 | 深圳华大基因科技有限公司 | 甲基化高通量检测方法 |
CN103088433A (zh) * | 2011-11-02 | 2013-05-08 | 深圳华大基因科技有限公司 | 全基因组甲基化高通量测序文库的构建方法及其应用 |
CN104372079A (zh) * | 2014-10-24 | 2015-02-25 | 中国科学院遗传与发育生物学研究所 | 一种甲基化dna的测序方法及其应用 |
CN104711250A (zh) * | 2015-01-26 | 2015-06-17 | 北京百迈客生物科技有限公司 | 一种长片段核酸文库的构建方法 |
CN107002153A (zh) * | 2015-02-04 | 2017-08-01 | 深圳华大基因研究院 | 一种构建长片段测序文库的方法 |
CN104894233A (zh) * | 2015-04-22 | 2015-09-09 | 上海昂朴生物科技有限公司 | 一种多样本多片段dna甲基化高通量测序方法 |
CN105002567A (zh) * | 2015-06-30 | 2015-10-28 | 北京百迈客生物科技有限公司 | 无参考基因组高通量简化甲基化测序文库的构建方法 |
US20170218458A1 (en) * | 2016-02-03 | 2017-08-03 | AnchorDx Medical Co.,Ltd. | Method for Detecting Methylated DNA |
CN106755319A (zh) * | 2016-11-24 | 2017-05-31 | 广州市基准医疗有限责任公司 | 甲基化dna检测方法 |
CN107937985A (zh) * | 2017-10-25 | 2018-04-20 | 人和未来生物科技(长沙)有限公司 | 一种微量碎片化dna甲基化检测文库的构建方法和检测方法 |
CN107904669A (zh) * | 2018-01-02 | 2018-04-13 | 华中农业大学 | 一种单细胞甲基化测序文库的构建方法及其应用 |
Non-Patent Citations (4)
Title |
---|
BROCK A. PETERS等: "Co-barcoded sequence reads from long DNA fragments: a cost-effective solution for \"perfect genome\" sequencing", FRONTIERS IN GENETICS, vol. 5, pages 466 * |
FANG ZHANG等: "Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube", NATURE BIOTECHNOLOGY, vol. 35, no. 9, pages 852 - 857, XP055584000, DOI: 10.1038/nbt.3897 * |
OU WANG等: "Single tube bead-based DNA co-barcoding for cost effective and accurate sequencing, haplotyping, and assembly", BIORXIV, pages 1 - 17 * |
魏冬凯等: "基于微量DNA样本的简化甲基化文库构建方法研究", 生物信息学, vol. 15, no. 01, pages 33 - 45 * |
Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2023082251A1 (zh) * | 2021-11-15 | 2023-05-19 | 深圳华大智造科技股份有限公司 | 一种基于标签序列和链置换的全基因组甲基建库测序方法 |
CN116343919A (zh) * | 2023-04-11 | 2023-06-27 | 天津大学四川创新研究院 | 一种全基因组图谱绘制测序方法 |
CN116343919B (zh) * | 2023-04-11 | 2023-12-08 | 天津大学四川创新研究院 | 一种全基因组图谱绘制测序方法 |
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