CN112522258B - Recombinant cell with IL2RG gene and ADA gene knocked out in combined mode and application of recombinant cell in preparation of immunodeficiency pig model - Google Patents

Recombinant cell with IL2RG gene and ADA gene knocked out in combined mode and application of recombinant cell in preparation of immunodeficiency pig model Download PDF

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CN112522258B
CN112522258B CN202010971715.7A CN202010971715A CN112522258B CN 112522258 B CN112522258 B CN 112522258B CN 202010971715 A CN202010971715 A CN 202010971715A CN 112522258 B CN112522258 B CN 112522258B
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sgrna
ada
u6grna
il2rg
plasmid
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CN112522258A (en
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牛冬
汪滔
马翔
曾为俊
王磊
程锐
赵泽英
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Nanjing Qizhen Genetic Engineering Co Ltd
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Abstract

The invention discloses a recombinant cell with IL2RG gene and ADA gene knocked out in a combined way and application thereof in preparation of an immunodeficiency pig model. The invention provides a method for preparing a polypeptide from sgRNA IL2RG‑g7 And sgRNA ADA‑g7 Use of a composed sgRNA combination in the preparation of a kit. The invention also provides a sgRNA combination, which consists of the sgRNA IL2RG‑g7 And sgRNA ADA‑g7 Composition is prepared. The sgRNA IL2RG‑g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:12 from nucleotide 1 to nucleotide 20; the sgRNA ADA‑g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:22 from nucleotide 1 to nucleotide 20. The invention also protects the application of the sgRNA combination in preparing recombinant cells and in preparing an immunodeficiency animal model. The invention lays a solid foundation for the preparation of the severe immunodeficiency pig model, and has great application value for the research and development of severe immunodeficiency medicines.

Description

Recombinant cell with IL2RG gene and ADA gene knocked out in combined mode and application of recombinant cell in preparation of immunodeficiency pig model
Technical Field
The invention belongs to the technical field of biology, and relates to a recombinant cell for combined knockout of IL2RG genes and ADA genes and application thereof in preparation of an immunodeficiency pig model.
Background
Severe combined immunodeficiency (severe combined immunodeficiency, SCID) is the most severe phenotype in primary immunodeficiency disease, and refers to the simultaneous development, differentiation, proliferation, metabolism or dysfunction of T cells, B cells and NK cells due to genetic, developmental or infectious factors. In 1950, glanzmann and Riniker reported SCID disease in human infants for the first time. Worldwide, the neonatal morbidity of SCID is about 1/50000, the disease is early in onset, the clinical manifestation is heavy, and the mortality rate is high. Most SCIDs are caused by abnormalities in immune-related genes, and the primary genetic means of SCIDs include both X-linked recessive inheritance and autosomal recessive inheritance. The disease has a certain regional and blood-related nature, and is frequently seen in male patients due to the characteristic of X-linked recessive inheritance. Currently, therapies aimed at SCID mainly include bone marrow or hematopoietic stem cell transplantation and gene therapy. Bone marrow or stem cell transplantation is the best approach to treat SCID, but finding a donor of the appropriate ligand to the patient is quite difficult.
As large animals, pigs are main meat source animals for a long time, are easy to breed and raise on a large scale, have lower requirements on ethical morals, animal protection and the like, have similar body sizes and organ functions to human beings, and are ideal human disease model animals. In addition, in the study of the effects of bioactive macromolecule or cell therapy, the use of heterologous animals will result in immune rejection, and thus, effective animal testing is not possible. The severe combined immunodeficiency model animals avoid the problem of immunological rejection between xenogeneics. Therefore, the human SCID pig model is developed for carrying out the researches of drug (especially bioactive molecules) screening, drug effect detection, disease pathology, gene and cell therapy, and the like, can provide effective experimental data for further clinical application, and also provides a powerful experimental means for successfully treating human SCID diseases.
SCID caused by X-linked recessive inheritance is one of the most common types, and the pathogenic mutation is that IL2RG gene encoding IL-2 Rgamma chain is mutated, thereby causing dysfunction of IL-2 Rgamma chain. The IL-2 Rgamma chain is also called a common gamma chain (common gamma chain), and is a signal transduction molecule commonly used when a plurality of cytokine receptors such as IL-2, IL-4, IL-7 and the like involved in regulating the differentiation, development and maturation processes of immune cells are combined with corresponding ligands thereof, and then signals are transduced into the immune cells. Thus, dysfunction of the consensus gamma chain can lead to dysfunction or dysplasia of immune cells, thereby eliciting SCID.
SCID caused by autosomal recessive inheritance. Defects in the purine nucleoside nuclease-related gene ADA in the nucleotide metabolism-related enzyme can result in a substantial enrichment of the intracellular nucleotide metabolites dATP or dGTP, which have selective toxic effects on lymphocytes, resulting in dysfunction, damage or death of the lymphocytes, which in turn triggers SCID.
Disclosure of Invention
The invention aims to provide a recombinant cell with IL2RG gene and ADA gene knocked out in a combined way and application thereof in preparation of an immunodeficiency pig model.
The invention provides a method for preparing a polypeptide from sgRNA IL2RG-g7 And sgRNA ADA-g7 Use of a composed sgRNA combination in the preparation of a kit.
The invention also provides application of a plasmid combination consisting of the plasmid pKG-U6gRNA (IL 2RG-g 7) and the plasmid pKG-U6gRNA (ADA-g 7) in preparation of a kit. .
The invention also provides a plasmid combination and application of the plasmid pKG-GE3 in preparation of the kit. The plasmid combination consists of plasmid pKG-U6gRNA (IL 2RG-g 7) and plasmid pKG-U6gRNA (ADA-g 7).
The invention also provides a sgRNA combination, which consists of the sgRNA IL2RG-g7 And sgRNA ADA-g7 Composition is prepared.
The invention also provides a plasmid combination which consists of the plasmid pKG-U6gRNA (IL 2RG-g 7) and the plasmid pKG-U6gRNA (ADA-g 7).
The invention also provides a kit comprising the sgRNA combination.
The invention also provides a kit comprising the plasmid combination. The kit also comprises plasmid pKG-GE3.
The invention also protects the application of the sgRNA combination in preparing a kit.
The invention also protects the application of the plasmid combination in preparing a kit.
The invention also protects the plasmid combination and the application of the plasmid pKG-GE3 in the preparation of the kit.
The use of any of the above kits is as follows (a) or (b): (a) preparing a recombinant cell; (b) preparing an immunodeficiency animal model. When the immunodeficiency animal model is prepared, the recombinant cells are prepared first, and then the recombinant cells are used as donor cells to obtain cloned animals by adopting a somatic cell cloning technology, namely the immunodeficiency animal model. An immunodeficiency cell model can also be prepared by using the immunodeficiency animal model, namely, corresponding cells of the immunodeficiency animal model are separated to be used as the immunodeficiency cell model. The animal may specifically be a pig. The animal model is a pig model. The cell model is a pig cell model. The recombinant cells are porcine recombinant cells. The transformed recipient cell of the recombinant cell is a porcine cell. The porcine cells may be porcine fibroblasts. The porcine cells may specifically be porcine primary fibroblasts. The pig may be a river fragrant pig.
The invention also protects the application of any one of the sgRNA combinations or any one of the plasmid combinations or any one of the kits in preparing recombinant cells. The recombinant cells are porcine recombinant cells. The transformed recipient cell of the recombinant cell is a porcine cell. The porcine cells may be porcine fibroblasts. The porcine cells may specifically be porcine primary fibroblasts. The pig may be a river fragrant pig.
The invention also protects the application of any one of the sgRNA combinations or any one of the plasmid combinations or any one of the kits in preparing an immunodeficiency animal model. When the method is applied, the recombinant cells are prepared first, and then the recombinant cells are used as donor cells to obtain cloned animals by adopting a somatic cell cloning technology, namely the immunodeficiency animal model. An immunodeficiency cell model can also be prepared by using the immunodeficiency animal model, namely, corresponding cells of the immunodeficiency animal model are separated to be used as the immunodeficiency cell model. The animal model is a pig model. The cell model is a pig cell model. The animal may specifically be a pig. The recombinant cells are porcine recombinant cells. The transformed recipient cell of the recombinant cell is a porcine cell. The porcine cells may be porcine fibroblasts. The porcine cells may specifically be porcine primary fibroblasts. The pig may be a river fragrant pig.
The invention also provides a method for preparing recombinant cells, comprising the following steps: the plasmid pKG-U6gRNA (IL 2RG-g 7), the plasmid pKG-U6gRNA (ADA-g 7) and the plasmid pKG-GE3 are co-transfected into pig cells to obtain recombinant cells with mutated IL2RG genes and ADA genes. The porcine cells may be porcine fibroblasts. The porcine cells may specifically be porcine primary fibroblasts. The pig may be a river fragrant pig.
The recombinant cells prepared by the method also belong to the protection scope of the invention.
Specifically, the recombinant cell may be any one of the following: monoclonal cell lines numbered 7, 15, 19, 20, 21, 26, 28, 30, 31, 35, 49 in tables 1 to 2.
The invention also protects the application of the recombinant cells in preparing an immunodeficiency animal model. When the immunodeficiency animal model is prepared, the recombinant cells are used as donor cells, and a somatic cell cloning technology is adopted to obtain cloned animals, namely the immunodeficiency animal model. An immunodeficiency cell model can also be prepared by using the immunodeficiency animal model, namely, corresponding cells of the immunodeficiency animal model are separated to be used as the immunodeficiency cell model. The animal model is a pig model. The cell model is a pig cell model.
The recombinant cell is a cell defective in both IL2RG gene and ADA gene.
The recombinant cell is a recombinant cell in which both IL2RG gene and ADA gene are mutated. The mutation may be a heterozygous mutation (corresponding genotype is heterozygous mutant) or a homozygous mutation (corresponding genotype is biallelic identical mutant or biallelic different mutant).
The plasmid pKG-U6gRNA (IL 2RG-g 7) is transcribed to give sgRNA IL2RG-g7
The plasmid pKG-U6gRNA (ADA-g 7) was transcribed to give sgRNA ADA-g7
sgRNA IL2RG-g7 Target point: 5'-TCCCTTCAGAGAATAGATAG-3'.
sgRNA ADA-g7 Target point: 5'-GGAGGGCGTGGTGTACGTGG-3'.
sgRNA IL2RG-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:12 from nucleotide 1 to nucleotide 20;
sgRNA ADA-g7 the target sequence binding region of (a) is as set forth in SEQ ID NO:22 from nucleotide 1 to nucleotide 20.
The sgRNA IL2RG-g7 As set forth in SEQ ID NO: shown at 12.
The sgRNA ADA-g7 As set forth in SEQ ID NO: shown at 22.
Specifically, the present invention relates to a method for manufacturing a semiconductor device. The plasmid pKG-U6gRNA (IL 2RG-g 7) was obtained by introducing the sgRNA with the aid of the restriction enzyme BbsI IL2RG-g7 Is inserted into a pKG-U6gRNA vector.
Specifically, the plasmid pKG-U6gRNA (ADA-g 7) converts the sgRNA by means of the restriction enzyme BbsI ADA-g7 Is inserted into a pKG-U6gRNA vector.
The plasmid pKG-GE3 has a specific fusion gene; the specific fusion gene codes for a specific fusion protein;
the specific fusion protein sequentially comprises the following elements from the N end to the C end: two Nuclear Localization Signals (NLS), cas9 protein, two nuclear localization signals, self-cleaving polypeptide P2A, fluorescent reporter protein, self-cleaving polypeptide T2A, resistance selection marker protein;
in the plasmid pKG-GE3, the EF1a promoter is used for promoting the expression of the specific fusion gene;
in plasmid pKG-GE3, the specific fusion gene has downstream a WPRE sequence element, a 3' LTR sequence element and a bGH poly (A) signal sequence element.
The plasmid pKG-GE3 has the following elements in this order: CMV enhancer, EF1a promoter, the specific fusion gene, WPRE sequence element, 3' LTR sequence element, bGH poly (A) signal sequence element.
In the specific fusion protein, two nuclear localization signals at the upstream of the Cas9 protein are SV40 nuclear localization signals, and two nuclear localization signals at the downstream of the Cas9 protein are nucleoplasin nuclear localization signals.
In the specific fusion protein, the fluorescent reporter protein can be EGFP protein.
In the specific fusion protein, the resistance screening marker protein can be a Puromycin protein.
The amino acid sequence of the self-cleaving polypeptide P2A is "ATNFSLLKQAGDVEENPGP" (the cleavage site where self-cleavage occurs is between the first amino acid residue and the second amino acid residue from the C-terminus).
The amino acid sequence of the self-cleaving polypeptide T2A is "EGRGSLLTCGDVEENPGP" (the cleavage site where self-cleavage occurs is between the first amino acid residue and the second amino acid residue from the C-terminus).
Specific fusion genes are specifically shown as SEQ ID NO:2 from nucleotide numbers 911-6706.
CMV enhancer as set forth in SEQ ID NO:2 from nucleotide 395 to 680.
The EF1a promoter is shown in SEQ ID NO:2 from nucleotide 682 to nucleotide 890.
WPRE sequence element is shown as SEQ ID NO:2 from nucleotide 6722 to nucleotide 7310.
The 3' LTR sequence element is shown in SEQ ID NO:2 from nucleotide 7382 to nucleotide 7615.
The bGH poly (A) signal sequence element is shown as SEQ ID NO:2 from nucleotide 7647 to nucleotide 7871.
Plasmid pKG-GE3 is specifically shown in SEQ ID NO: 2.
Plasmid pKG-U6gRNA has the sequence of SEQ ID NO:3 from nucleotide 2280 to nucleotide 2637.
The plasmid pKG-U6gRNA is specifically shown as SEQ ID NO: 3.
Porcine IL2RG gene information: encoding an interleukin 2receptor subunit gamma; located on the X chromosome; geneID is 397156,Sus scrofa. The protein coded by the pig IL2RG gene is shown as SEQ ID NO: 4. In the genome DNA, the pig IL2RG gene has 9 exons, wherein the 4 th exon and 500bp sequences of the 4 th exon and the upstream and downstream thereof are shown in SEQ ID NO:5 place Shown. Pig IL2RG gene has sgRNA IL2RG-g7 Is a target gene of (a). The pig DRA gene is a gene with SEQ ID NO:5, and a gene having a region shown in FIG. 5.
Pig ADA gene information: encoding adenosine deaminase; chromosome 17; geneID is 100625920,Sus scrofa. The protein coded by the pig ADA gene is shown as SEQ ID NO: 15. In the genome DNA, the pig ADA gene has 12 exons, wherein the 4 th exon and 500bp sequences respectively at the upstream and downstream thereof are shown in SEQ ID NO: shown at 16. The pig ADA gene is sgRNA ADA-g7 Is a target gene of (a). The porcine ADA gene is a gene having SEQ ID NO:16, and a gene of the region indicated by 16.
Any of the above immunodeficiency may be specifically a severe immunodeficiency.
The invention can be used for obtaining the severe immunodeficiency pig model by a gene editing means, is used for carrying out researches such as drug screening, drug effect detection, disease pathology, gene therapy and cell therapy, can provide effective experimental data for further clinical application, and lays a solid foundation for curing the severe immunodeficiency of human in the future.
Compared with the prior art, the invention has at least the following beneficial effects:
(1) The subject (pig) of the invention has better applicability than other animals (rats, mice, primates). At present, no severe immunodeficiency model of large animals is successfully developed. Rodents such as rats and mice have great differences from humans in terms of body type, organ size, physiology, pathology and the like, and cannot truly simulate normal physiological and pathological states of humans. Studies have shown that more than 95% of drugs that are validated in mice are ineffective in human clinical trials. In the case of large animals, primates are animals with the closest relationship to humans, but are small in size, late in sexual maturity (mating begins at 6-7 years old), and single animals, the population expansion rate is extremely slow, and the raising cost is also high. In addition, primate cloning is inefficient, difficult and costly. The pig is an animal which has the closest relationship with human except primate, and has the similar body shape, weight, organ size and the like as human, and has the similar anatomy, physiology, nutrition metabolism, disease pathogenesis and the like as human. Meanwhile, the pig has early sexual maturity (4-6 months), high fertility and multiple fetuses in one litter, and can form a larger group within 2-3 years. In addition, the cloning technology of pigs is very mature, and the cloning and feeding cost is much lower than that of primates; and pigs are taken as meat animals of human beings for a long time, and the resistance of the pigs taken as disease model animals in animal protection, ethics and the like is relatively small.
(2) The cas9 high-efficiency expression vector modified by the invention is adopted for gene editing, and the editing efficiency is obviously improved compared with the original vector.
(3) The gene editing is carried out with the Cas9 high-efficiency expression vector modified by the invention, the genotype of the obtained cell (homozygous mutation comprises identical mutation of double alleles and different mutation of double alleles, heterozygous mutation or wild type) can be analyzed according to the sequencing result of the target gene PCR product, and the probability of obtaining the homozygous mutation is 10% -20%; in addition, the obtained homozygous mutant monoclonal cell strain is used for somatic cell nuclear transfer to directly obtain the cloned pig containing the homozygous mutation of the target gene, and the homozygous mutation can be stably inherited.
The invention lays a solid foundation for the preparation of the severe immunodeficiency pig model, and has great application value for the research and development of severe immunodeficiency medicines.
Drawings
FIG. 1 is a schematic diagram of the structure of plasmid pX 330.
FIG. 2 is a schematic diagram of the structure of plasmid pKG-GE 3.
FIG. 3 is a schematic diagram of the structure of plasmid pKG-U6 gRNA.
FIG. 4 is a schematic representation of the insertion of a DNA molecule of about 20bp (target sequence binding region for transcription to form gRNA) into plasmid pKG-U6 gRNA.
FIG. 5 is an electrophoretogram of three groups of MSTN in step three of example 2.
FIG. 6 is an electrophoretogram of three sets of FNDC5 in step three of example 2.
FIG. 7 is an electrophoretogram of example 3 after PCR amplification using 8 pig genomic DNAs as templates and a primer set of IL2RG-GT-F4543/IL2 RG-GT-R5180.
FIG. 8 shows various double-stranded DNA molecules having cohesive ends in step three of example 3.
FIG. 9 is a plot of sequencing peaks in step four of example 3.
FIG. 10 is an electrophoretogram of example 4 after PCR amplification using 8 pig genomic DNAs as templates and primer pairs of ADA-GT-F259/ADA-GT-R1005.
FIG. 11 shows various double-stranded DNA molecules having cohesive ends in step three of example 4.
FIG. 12 is a plot of sequencing peaks in step four of example 4.
FIG. 13 is a graph showing the peak sequencing of the target gene of a part of the monoclonal cells in Table 1.
FIG. 14 is a graph showing the peak sequencing of the target gene of a part of the monoclonal cells in Table 2.
Detailed Description
The following detailed description of the invention is provided in connection with the accompanying drawings that are presented to illustrate the invention and not to limit the scope thereof. The examples provided below are intended as guidelines for further modifications by one of ordinary skill in the art and are not to be construed as limiting the invention in any way.
The experimental methods in the following examples, unless otherwise specified, are conventional methods, and are carried out according to techniques or conditions described in the literature in the field or according to the product specifications. Materials, reagents and the like used in the examples described below are commercially available unless otherwise specified. Unless otherwise indicated, the quantitative tests in the examples below were all performed in triplicate, and the results averaged. Complete culture solution (% by volume): 15% fetal bovine serum (Gibco) +83% DMEM medium (Gibco) +1% Penicillin-Streptomycin (Gibco) +1% HEPES (Solarbio). Cell culture conditions: 37 ℃,5% CO 2 、5%O 2 Is a constant temperature incubator.
8 pigs in example 3 and example 4 were all from the birth river of the fragrant pigs, of which 4 females (named 1, 2, 3, 4 respectively) and 4 males (named A, B, C, D respectively).
A method of preparing porcine primary fibroblasts: (1) taking 0.5g of pig ear tissue, removing hair, soaking in 75% alcohol for 30-40s, washing with PBS buffer solution containing 5% (volume ratio) Penicillin-Streptomycin (Gibco) for 5 times, and washing with PBS buffer solution for one time; (2) shearing the tissue with scissors, digesting with 5mL 1% collagenase solution (Sigma) at 37deg.C for 1h, centrifuging 500g for 5min, and discarding the supernatant; (3) the pellet was resuspended in 1mL of complete medium, then plated into a 9cm diameter cell culture dish containing 10mL of complete medium and capped with 0.2% gelatin (VWR), and cultured until the cells grew to about 60% of the bottom of the dish; (4) after step (3) is completed, cells are digested with trypsin and collected, and frozen using cell frozen stock (90% complete medium+10% dmso, volume ratio).
The porcine primary fibroblasts used in examples 2 to 5 were obtained from the above-described swine designated 2 (female, blood group AO).
Example 1 preparation of plasmids
Preparing a plasmid pX330-U6-Chimeric_BB-CBh-hSpCas9, as shown in SEQ ID NO: 1. Plasmid pX330-U6-Chimeric_BB-CBh-hSpCas9, abbreviated as plasmid pX330.
Preparing a plasmid pU6gRNA eEF1a-mNLS-hSpCas9-EGFP-PURO, and performing the following steps: 2. Plasmid pU6gRNA eEF1a-mNLS-hSpCas9-EGFP-PURO, abbreviated as plasmid pKG-GE3.
Plasmid pKG-U6gRNA was prepared as shown in SEQ ID NO: 3.
Plasmid pX330, plasmid pKG-GE3, plasmid pKG-U6gRNA are all circular plasmids.
The schematic structure of plasmid pX330 is shown in fig. 1.SEQ ID NO:1, nucleotides 440-725 constitute the CMV enhancer, nucleotides 727-1208 constitute the chicken β -actin promoter, nucleotides 1304-1324 encode the SV40 Nuclear Localization Signal (NLS), nucleotides 1325-5449 encode the Cas9 protein, and nucleotides 5450-5497 encode the nucleoplasin Nuclear Localization Signal (NLS).
The schematic structure of plasmid pKG-GE3 is shown in FIG. 2.SEQ ID NO:2, nucleotides 395 to 680 comprising the CMV enhancer, nucleotides 682 to 890 comprising the EF1a promoter, nucleotides 986 to 1006 comprising the Nuclear Localization Signal (NLS), nucleotides 1016 to 1036 comprising the Nuclear Localization Signal (NLS), nucleotides 1037 to 5161 comprising the Cas9 protein, nucleotides 5162 to 5209 comprising the Nuclear Localization Signal (NLS), nucleotides 5219 to 5266 comprising the Nuclear Localization Signal (NLS), nucleotides 5276 to 5332 comprising the self-cleaving polypeptide P2A (the amino acid sequence of the self-cleaving polypeptide P2A is "ATNFSLLKQAGDVEENPGP", the cleavage site for the self-cleaving is between the first amino acid residue and the second amino acid residue from the C-terminus), nucleotide numbers 5333-6046 encode EGFP protein, nucleotide numbers 6056-6109 encode self-cleaving polypeptide T2A (the amino acid sequence of self-cleaving polypeptide T2A is EGRGSLLTCGDVEENPGP, the cleavage site where self-cleavage occurs is between the first amino acid residue and the second amino acid residue from the C-terminus), nucleotide numbers 6110-6703 encode Puromycin protein (called Puro protein for short), nucleotide numbers 6722-7310 constitute WPRE sequence element, nucleotide numbers 7382-7615 constitute 3' LTR sequence element, and nucleotide numbers 7647-7871 constitute bGH poly (A) signal sequence element. SEQ ID NO:2, 911-6706 form a fusion gene, expressing a fusion protein. Due to the presence of self-cleaving polypeptide P2A and self-cleaving polypeptide T2A, the fusion protein spontaneously forms three proteins: proteins with Cas9 protein, proteins with EGFP protein, and proteins with Puro protein.
Compared with plasmid pX330, plasmid pKG-GE3 was mainly modified as follows: (1) removing residual gRNA backbone sequences (GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTTT), reducing interference; (2) the original chicken beta-actin promoter is modified into an EF1a promoter with higher expression activity, so that the protein expression capacity of the Cas9 gene is increased; (3) adding nuclear localization signal coding genes (NLS) at the upstream and downstream of the Cas9 gene, and increasing the nuclear localization capability of the Cas9 protein; (4) the original plasmid has no eukaryotic cell screening mark, is not beneficial to screening and enrichment of positive transformed cells, and is sequentially inserted with P2A-EGFP-T2A-PURO coding genes at the downstream of Cas9 genes, so that the carrier fluorescence and eukaryotic cell resistance screening capability are endowed; (5) the insertion of the WPRE element and the 3' ltr sequence element enhances the protein translation capacity of the Cas9 gene.
The schematic structure of plasmid pKG-U6gRNA is shown in FIG. 3.SEQ ID NO:3, nucleotides 2280 to 2539 constitute the hU6 promoter and nucleotides 2558 to 2637 are used for transcription to form the gRNA backbone. When in use, a DNA molecule (target sequence binding region for transcription to form gRNA) of about 20bp is inserted into plasmid pKG-U6gRNA to form a recombinant plasmid, the schematic diagram is shown in FIG. 4, and the recombinant plasmid is transcribed in cells to obtain gRNA.
Example 2 comparison of the effects of plasmid pX330 and plasmid pKG-GE3
Two gRNA targets located at the MSTN gene were selected:
target of MSTN-gRNA 1: 5'-GCTGATTGTTGCTGGTCCCG-3';
target of MSTN-gRNA 2: 5'-TTTCCAGGCGAAGTTTACTG-3'.
Two gRNA targets located at the FNDC5 gene were selected:
target for FNDC5-gRNA 1: 5'-TGTACTCAGTGTCCTCCTCC-3';
target for FNDC5-gRNA 2: 5'-GCTCTTCAAGACGCCTCGCG-3'.
Primers used to amplify fragments containing the target were:
MSTN-F896:5’-TCTCTCAGACAGTGCAGGCATTA-3’;
MSTN-R1351:5’-CGTTTCCGTCGTAGCGTGATAAT-3’。
FNDC5-F209:5’-CAGTTCTCACTTGATGGCCTTGG-3’;
FNDC5-R718:5’-AGGGGTCTGGGGAGGAATGG-3’。
1. preparation of recombinant plasmids
Plasmid pKG-U6gRNA was taken and digested with restriction enzyme BbsI, and the vector backbone (about 3kb linear fragment) was recovered.
MSTN-1S and MSTN-1A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends. The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to give plasmid pKG-U6gRNA (MSTN-1).
MSTN-2S and MSTN-2A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends. The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to give plasmid pKG-U6gRNA (MSTN-2).
FNDC5-1S and FNDC5-1A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends. The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to give plasmid pKG-U6gRNA (FNDC 5-1).
FNDC5-2S and FNDC5-2A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends. The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to give plasmid pKG-U6gRNA (FNDC 5-2).
MSTN-1S:5’-caccGCTGATTGTTGCTGGTCCCG-3’;
MSTN-1A:5’-aaacCGGGACCAGCAACAATCAGC-3’。
MSTN-2S:5’-caccgTTTCCAGGCGAAGTTTACTG-3’;
MSTN-2A:5’-aaacCAGTAAACTTCGCCTGGAAAc-3’。
FNDC5-1S:5’-caccgTGTACTCAGTGTCCTCCTCC-3’;
FNDC5-1A:5’-aaacGGAGGAGGACACTGAGTACAc-3’。
FNDC5-2S:5’-caccGCTCTTCAAGACGCCTCGCG-3’;
FNDC5-2A:5’-aaacCGCGAGGCGTCTTGAAGAGC-3’。
2. Comparison of the effects of plasmid pX330 and plasmid pKG-GE3
1. Co-transfection
MSTN-B group: plasmid pKG-U6gRNA (MSTN-1) and plasmid pKG-U6gRNA (MSTN-2) were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.46. Mu.g of plasmid pKG-U6gRNA (MSTN-1): 0.46. Mu.g of plasmid pKG-U6gRNA (MSTN-2).
MSTN-330 group: plasmid pKG-U6gRNA (MSTN-1), plasmid pKG-U6gRNA (MSTN-2) and plasmid pX330 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.46. Mu.g of plasmid pKG-U6gRNA (MSTN-1): 0.46. Mu.g of plasmid pKG-U6gRNA (MSTN-2): 1.08 μg of plasmid pX330.
MSTN-KG group: the plasmid pKG-U6gRNA (MSTN-1), plasmid pKG-U6gRNA (MSTN-2) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.46. Mu.g of plasmid pKG-U6gRNA (MSTN-1): plasmid 0.46. Mu.g pKG-U6gRNA (MSTN-2): 1.08 μg of plasmid pKG-GE3.
FNDC5-B group: the plasmid pKG-U6gRNA (FNDC 5-1) and the plasmid pKG-U6gRNA (FNDC 5-2) were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.46. Mu.g of plasmid pKG-U6gRNA (FNDC 5-1): 0.46. Mu.g of plasmid pKG-U6gRNA (FNDC 5-2).
FNDC5-330 group: the plasmid pKG-U6gRNA (FNDC 5-1), plasmid pKG-U6gRNA (FNDC 5-2) and plasmid pX330 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.46. Mu.g of plasmid pKG-U6gRNA (FNDC 5-1): 0.46. Mu.g of plasmid pKG-U6gRNA (FNDC 5-2): 1.08 μg of plasmid pX330.
FNDC5-KG group: the plasmid pKG-U6gRNA (FNDC 5-1), plasmid pKG-U6gRNA (FNDC 5-2) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.46. Mu.g of plasmid pKG-U6gRNA (FNDC 5-1): 0.46. Mu.g of plasmid pKG-U6gRNA (FNDC 5-2): 1.08 μg of plasmid pKG-GE3.
Co-transfection was performed by electric shock transfection using a mammalian nuclear transfection kit (Neon kit, thermofiser) and a Neon TM transfection system electrotransfection apparatus (parameters set to 1450V, 10ms, 3 pulses).
2. After the step 1 is completed, the culture is carried out for 16 to 18 hours by adopting the complete culture solution, and then the culture is carried out by replacing the new complete culture solution. The total incubation time was 48 hours.
3. After step 2 was completed, cells were digested with trypsin and collected, genomic DNA was extracted, PCR amplification was performed using a primer pair (three sets of MSTN) composed of MSTN-F896 and MSTN-R1351, or PCR amplification was performed using a primer pair (three sets of FNDC 5) composed of FNDC5-F209 and FNDC5-R718, followed by electrophoresis.
The results of three groups of MSTNs are shown in FIG. 5.
The results of three groups of FNDC5 are shown in FIG. 6.
The deletion mutation efficiency of the MSTN-330 group gene is 27.6%, and the deletion mutation efficiency of the MSTN-KG group gene is 86.5%. The deletion mutation efficiency of the gene of the FNDC5-330 group is 18.6%, and the deletion mutation efficiency of the gene of the FNDC5-KG group is 81.7%. The results show that the use of plasmid pKG-GE3 results in a significant increase in gene editing efficiency compared to the use of plasmid pX 330.
EXAMPLE 3 screening of targets for IL2RG Gene knockout
1. IL2RG gene knockout preset target point and adjacent genome sequence conservation analysis
Porcine IL2RG gene information: encoding an interleukin 2receptor subunit gamma; located on the X chromosome; geneID is 397156,Sus scrofa. The protein coded by the pig IL2RG gene is shown as SEQ ID NO: 4. In the genome DNA, the pig IL2RG gene has 9 exons, wherein the 4 th exon and 500bp sequences of the 4 th exon and the upstream and downstream thereof are shown in SEQ ID NO: shown at 5.
The PCR amplification was performed using 8 pig genomic DNAs as templates, respectively, and primer pairs consisting of primers IL2RG-GT-F4543/IL2RG-GT-R5180, followed by electrophoresis, as shown in FIG. 7. And (3) recovering PCR amplification products, sequencing, and comparing the sequencing results with IL2RG gene sequences in a public database for analysis. Based on the results of the alignment, primers for detecting the mutation (the primers themselves avoid possible mutation sites) were designed. The primers designed for mutation detection were: IL2RG-nF33/IL2RG-nR460.
IL2RG-GT-F4543:5’-ATATAGCACAGGGGAGGGAGGAA-3’;
IL2RG-GT-R5180:5’-AGGGTGCGAAGGGTCAGATTC-3’;
IL2RG-nF33:5’-CCCAGGCTTCCCACTATATTCTC-3’;
IL2RG-nR460:5’-CCATTGGATCCCTCACTTCTTCT-3’。
2. Screening target
Several targets were initially screened by screening NGG (avoiding possible mutation sites), from which 9 targets were further screened by pre-experiments.
The 9 targets were as follows:
sgRNA IL2RG-g1 target point: 5'-CCTGTAGTTTTAGCGTCTGT-3';
sgRNA IL2RG-g2 target point: 5'-CAACAAATGTTTGGTAGAGG-3';
sgRNA IL2RG-g3 target point: 5'-GATGATAAAGTCCAGGAGTG-3';
sgRNA IL2RG-g4 target point: 5'-CTGGACTTTATCATCATTAG-3';
sgRNA IL2RG-g5 target point: 5' -TTGTCCAGCTCCAGGACCCA-3’;
sgRNA IL2RG-g6 Target point: 5'-GGCCACTATCTATTCTCTGA-3';
sgRNA IL2RG-g7 target point: 5'-TCCCTTCAGAGAATAGATAG-3';
sgRNA IL2RG-g8 target point: 5'-AACATTTGTTGTCCAGCTCC-3';
sgRNA IL2RG-g9 target point: 5'-TGTCCAGCTCCAGGACCCAC-3'.
3. Preparation of recombinant plasmids
Plasmid pKG-U6gRNA was taken and digested with restriction enzyme BbsI, and the vector backbone (about 3kb linear fragment) was recovered.
IL2RG-g1S and IL2RG-g1A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8A). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 1). Plasmid pKG-U6gRNA (IL 2RG-g 1) expresses the sequence of SEQ ID NO: 6. SgRNA as shown in FIG. 6 IL2RG-g1
SEQ ID NO:6:
CCUGUAGUUUUAGCGUCUGUguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
IL2RG-g2S and IL2RG-g2A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8B). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 2). Plasmid pKG-U6gRNA (IL 2RG-g 2) expresses the sequence of SEQ ID NO: 7. SgRNA IL2RG-g2
SEQ ID NO:7:
CAACAAAUGUUUGGUAGAGGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
IL2RG-g3S and IL2RG-g3A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8C). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 3). Plasmid pKG-U6gRNA (IL 2RG-g 3) expresses the sequence of SEQ ID NO:8, sgRNA shown in FIG. 8 IL2RG-g3
SEQ ID NO:8:
GAUGAUAAAGUCCAGGAGUGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
IL2RG-g4S and IL2RG-g4A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8D). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 4). Plasmid pKG-U6gRNA (IL 2RG-g 4) expresses the sequence of SEQ ID NO: 9. SgRNA as shown in FIG. 9 IL2RG-g4
SEQ ID NO:9:
CUGGACUUUAUCAUCAUUAGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
IL2RG-g5S and IL2RG-g5A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8E). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 5). Plasmid pKG-U6gRNA (IL 2RG-g 5) expresses the sequence of SEQ ID NO:10, sgRNA shown in FIG. 10 IL2RG-g5
SEQ ID NO:10:
UUGUCCAGCUCCAGGACCCAguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
IL2RG-g6S and IL2RG-g6A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8F). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 6). Plasmid pKG-U6gRNA (IL 2RG-g 6) expresses the sequence of SEQ ID NO:11, sgRNA shown in FIG. 11 IL2RG-g6
SEQ ID NO:11:
GGCCACUAUCUAUUCUCUGAguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
IL2RG-G7S and IL2RG-G7A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8G). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 7). Plasmid pKG-U6gRNA (IL 2RG-g 7) expresses the sequence of SEQ ID NO:12, sgRNA shown in FIG. 12 IL2RG-g7
SEQ ID NO:12:
UCCCUUCAGAGAAUAGAUAGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
IL2RG-g8S and IL2RG-g8A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8H). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 8). Plasmid pKG-U6gRNA (IL 2RG-g 8) expresses the sequence of SEQ ID NO:13, sgRNA shown in FIG. 13 IL2RG-g8
SEQ ID NO:13:
AACAUUUGUUGUCCAGCUCCguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
IL2RG-g9S and IL2RG-g9A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 8I). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (IL 2RG-g 9). Plasmid pKG-U6gRNA (IL 2RG-g 9) expresses the sequence of SEQ ID NO:14, sgRNA shown in FIG. 14 IL2RG-g9
SEQ ID NO:14:
UGUCCAGCUCCAGGACCCACguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
sgRNA-IL2RG-1S:5’-caccgCCTGTAGTTTTAGCGTCTGT-3’;
sgRNA-IL2RG-1A:5’-aaacACAGACGCTAAAACTACAGGc-3’。
sgRNA-IL2RG-2S:5’-caccgCAACAAATGTTTGGTAGAGG-3’;
sgRNA-IL2RG-2A:5’-aaacCCTCTACCAAACATTTGTTGc-3’。
sgRNA-IL2RG-3S:5’-caccGATGATAAAGTCCAGGAGTG-3’;
sgRNA-IL2RG-3A:5’-aaacCACTCCTGGACTTTATCATC-3’。
sgRNA-IL2RG-4S:5’-caccgCTGGACTTTATCATCATTAG-3’;
sgRNA-IL2RG-4A:5’-aaacCTAATGATGATAAAGTCCAGc-3’。
sgRNA-IL2RG-5S:5’-caccgTTGTCCAGCTCCAGGACCCA-3’;
sgRNA-IL2RG-5A:5’-aaacTGGGTCCTGGAGCTGGACAAc-3’。
sgRNA-IL2RG-6S:5’-caccgGGCCACTATCTATTCTCTGA-3’;
sgRNA-IL2RG-6A:5’-aaacTCAGAGAATAGATAGTGGCCc-3’。
sgRNA-IL2RG-7S:5’-caccgTCCCTTCAGAGAATAGATAG-3’;
sgRNA-IL2RG-7A:5’-aaacCTATCTATTCTCTGAAGGGAc-3’。
sgRNA-IL2RG-8S:5’-caccgAACATTTGTTGTCCAGCTCC-3’;
sgRNA-IL2RG-8A:5’-aaacGGAGCTGGACAACAAATGTTc-3’。
sgRNA-IL2RG-9S:5’-caccgTGTCCAGCTCCAGGACCCAC-3’;
sgRNA-IL2RG-9A:5’-aaacGTGGGTCCTGGAGCTGGACAc-3’。
The sgRNA-IL2RG-1S, sgRNA-IL2RG-1A, sgRNA-IL2RG-2S, sgRNA-IL2RG-2A, sgRNA-IL2RG-3S, sgRNA-IL2RG-3A, sgRNA-IL2RG-4S, sgRNA-IL2RG-4A, sgRNA-IL2RG-5S, sgRNA-IL2RG-5A, sgRNA-IL2RG-6S, sgRNA-IL2RG-6A, sgRNA-IL2RG-7S, sgRNA-IL2RG-7A, sgRNA-IL2RG-8S, sgRNA-IL2RG-8A, sgRNA-IL2RG-9S, sgRNA-IL2RG-9A are single-stranded DNA molecules.
4. Editing efficiency comparison of different targets
1. Co-transfection
A first group: the plasmid pKG-U6gRNA (IL 2RG-g 1) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 1): 1.238. Mu.g of plasmid pKG-GE3.
Second group: the plasmid pKG-U6gRNA (IL 2RG-g 2) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 2): 1.238. Mu.g of plasmid pKG-GE3.
Third group: the plasmid pKG-U6gRNA (IL 2RG-g 3) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 3): 1.238. Mu.g of plasmid pKG-GE3.
Fourth group: the plasmid pKG-U6gRNA (IL 2RG-g 4) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 4): 1.238. Mu.g of plasmid pKG-GE3.
Fifth group: the plasmid pKG-U6gRNA (IL 2RG-g 5) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 5): 1.238. Mu.g of plasmid pKG-GE3.
Sixth group: the plasmid pKG-U6gRNA (IL 2RG-g 6) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 6): 1.238. Mu.g of plasmid pKG-GE3.
Seventh group: the plasmid pKG-U6gRNA (IL 2RG-g 7) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 7): 1.238. Mu.g of plasmid pKG-GE3.
Eighth group: the plasmid pKG-U6gRNA (IL 2RG-g 8) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 8): 1.238. Mu.g of plasmid pKG-GE3.
Ninth group: the plasmid pKG-U6gRNA (IL 2RG-g 9) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g of plasmid pKG-U6gRNA (IL 2RG-g 9): 1.238. Mu.g of plasmid pKG-GE3.
Tenth group: pig primary fibroblasts were not subjected to any transfection procedure.
Co-transfection was performed by electric shock transfection using a mammalian nuclear transfection kit (Neon kit, thermofiser) and a Neon TM transfection system electrotransfection apparatus (parameters set to 1450V, 10ms, 3 pulses).
2. After the step 1 is completed, the culture is carried out for 16 to 18 hours by adopting the complete culture solution, and then the culture is carried out by replacing the new complete culture solution. The total incubation time was 48 hours.
3. After step 2 was completed, cells were digested with trypsin and collected, genomic DNA was extracted, PCR amplification was performed using a primer set consisting of IL2RG-nF33 and IL2RG-nR460, followed by electrophoresis and sequencing, and the results are shown in FIG. 9.
The efficiency of editing of different targets was obtained by analyzing the sequencing peak plots using the synthetic ICE tool. The editing efficiency of the first to tenth sets of different targets was 1%, 0%, 3%, 5%, 0%, 46%, 65%, 18%, 34% and 0% in this order. The results showed that the seventh set of editing was most efficient, sgRNA IL2RG-g7 Is an optimal target point.
Example 4 screening of target sites for ADA Gene knockout
1. ADA gene knockout preset target spot and adjacent genome sequence conservation analysis
Pig ADA gene information: encoding adenosine deaminase; chromosome 17;
GeneID is 100625920,Sus scrofa. The protein coded by the pig ADA gene is shown as SEQ ID NO: 15. In the genome DNA, the pig ADA gene has 12 exons, wherein the 4 th exon and 500bp sequences respectively at the upstream and downstream thereof are shown in SEQ ID NO: shown at 16.
The genomic DNA of 8 pigs was used as a template, and PCR amplification was performed using a primer pair consisting of primers ADA-GT-F259/ADA-GT-R1005, followed by electrophoresis, see FIG. 10. And (3) recovering PCR amplified products, sequencing, and comparing the sequencing results with ADA gene sequences in a public database for analysis. Based on the results of the alignment, primers for detecting the mutation (the primers themselves avoid possible mutation sites) were designed. The primers designed for mutation detection were: ADA-nnF229/ADA-nnR456.
ADA-GT-F259:5’-GTTAAGGATCTGGTGTTGCGGTG-3’;
ADA-GT-R1005:5’-GTTCACACTCCTAGACTCCAGCC-3’。
ADA-nnF229:5’-GAGGCCGTCAAAAGGATTGC-3’;
ADA-nnR456:5’-CAAAGTCTCTCTTGGGTCAGGG-3’。
2. Screening target
Several targets were initially screened by screening NGG (avoiding possible mutation sites), from which 8 targets were further screened by pre-experiments.
The 8 targets were as follows:
sgRNA ADA-g1 target point: 5'-AAGGATTGCCTACGAGTTTG-3';
sgRNA ADA-g2 target point: 5'-TTGGAGTTGGCCAGCAGGTG-3';
sgRNA ADA-g3 target point: 5'-TTTCATCTCCACAAACTCGT-3';
sgRNA ADA-g4 target point: 5'-TCAGCCTGGTTCCAGGGGAT-3';
sgRNA ADA-g6 target point: 5'-CCTGCTGGCCAACTCCAAAG-3';
sgRNA ADA-g7 target point: 5'-GGAGGGCGTGGTGTACGTGG-3';
sgRNA ADA-g8 target point: 5'-CAAGGAGGGCGTGGTGTACG-3';
sgRNA ADA-g9 target point: 5'-TGTGGAGATGAAAGCCAAGG-3'.
3. Preparation of recombinant plasmids
Plasmid pKG-U6gRNA was taken and digested with restriction enzyme BbsI, and the vector backbone (about 3kb linear fragment) was recovered.
ADA-g1S and ADA-g1A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends (FIG. 11A). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (ADA-g 1). Plasmid pKG-U6gRNA (ADA-g 1)) expresses the sequence of SEQ ID NO:17, sgRNA as shown in FIG. 17 ADA-g1
SEQ ID NO:17:
AAGGAUUGCCUACGAGUUUGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
ADA-g2S and ADA-g2A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends (FIG. 11B). The double-stranded DNA molecule having a cohesive end and the vector backbone were ligated to obtain plasmid pKG-U6gRNA (ADA-g 2). Plasmid pKG-U6gRNA (ADA-g 2) expresses the sequence of SEQ ID NO:18, sgRNA shown in FIG. 18 ADA-g2
SEQ ID NO:18:
UUGGAGUUGGCCAGCAGGUGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
ADA-g3S and ADA-g3A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends (FIG. 11C). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (ADA-g 3). Plasmid pKG-U6gRNA (ADA-g 3) expresses the sequence of SEQ ID NO:19, sgRNA shown in FIG. 19 ADA-g3
SEQ ID NO:19:
UUUCAUCUCCACAAACUCGUguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
ADA-g4S and ADA-g4A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends (FIG. 11D). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (ADA-g 4). Plasmid pKG-U6gRNA (ADA-g 4) expresses the sequence of SEQ ID NO:20, sgRNA shown in FIG. 20 ADA-g4
SEQ ID NO:20:
UCAGCCUGGUUCCAGGGGAUguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
ADA-g6S and ADA-g6A were synthesized separately, and then mixed and annealed to give double-stranded DNA molecules having cohesive ends (FIG. 11E). The double-stranded DNA molecule having a cohesive end and the vector backbone were ligated to obtain plasmid pKG-U6gRNA (ADA-g 6). Plasmid pKG-U6gRNA (ADA-g 6) expresses the sequence of SEQ ID NO:21, sgRNA as indicated in FIG. 21 ADA-g6
SEQ ID NO:21:
CCUGCUGGCCAACUCCAAAGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
ADA-g7S and ADA-g7A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends (FIG. 11F). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (ADA-g 7). Plasmid pKG-U6gRNA (ADA-g 7) expresses the sequence of SEQ ID NO:22, sgrnas as shown ADA-g7
SEQ ID NO:22:
GGAGGGCGUGGUGUACGUGGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
ADA-G8S and ADA-G8A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends (FIG. 11G). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (ADA-g 8). Plasmid pKG-U6gRNA (ADA-g 8) expresses the sequence of SEQ ID NO:23, sgRNA shown in FIG. 23 ADA-g8
SEQ ID NO:23:
CAAGGAGGGCGUGGUGUACGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
ADA-g9S and ADA-g9A were synthesized separately, and then mixed and annealed to obtain double-stranded DNA molecules having cohesive ends (FIG. 11H). The double-stranded DNA molecule having a cohesive end was ligated to the vector backbone to obtain plasmid pKG-U6gRNA (ADA-g 9). Plasmid pKG-U6gRNA (ADA-g 9) expresses the sequence of SEQ ID NO:24, sgRNA shown in FIG. 24 ADA-g9
SEQ ID NO:24:
UGUGGAGAUGAAAGCCAAGGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaa aaguggcaccgagucggugcuuuu
sgRNA-ADA-1S:5’-caccgAAGGATTGCCTACGAGTTTG-3’;
sgRNA-ADA-1A:5’-aaacCAAACTCGTAGGCAATCCTTc-3’。
sgRNA-ADA-2S:5’-caccgTTGGAGTTGGCCAGCAGGTG-3’;
sgRNA-ADA-2A:5’-aaacCACCTGCTGGCCAACTCCAAc-3’。
sgRNA-ADA-3S:5’-caccgTTTCATCTCCACAAACTCGT-3’;
sgRNA-ADA-3A:5’-aaacACGAGTTTGTGGAGATGAAAc-3’。
sgRNA-ADA-4S:5’-caccgTCAGCCTGGTTCCAGGGGAT-3’;
sgRNA-ADA-4A:5’-aaacATCCCCTGGAACCAGGCTGAc-3’。
sgRNA-ADA-6S:5’-caccgCCTGCTGGCCAACTCCAAAG-3’;
sgRNA-ADA-6A:5’-aaacCTTTGGAGTTGGCCAGCAGGc-3’。
sgRNA-ADA-7S:5’-caccGGAGGGCGTGGTGTACGTGG-3’;
sgRNA-ADA-7A:5’-aaacCCACGTACACCACGCCCTCC-3’。
sgRNA-ADA-8S:5’-caccgCAAGGAGGGCGTGGTGTACG-3’;
sgRNA-ADA-8A:5’-aaacCGTACACCACGCCCTCCTTGc-3’。
sgRNA-ADA-9S:5’-caccgTGTGGAGATGAAAGCCAAGG-3’;
sgRNA-ADA-9A:5’-aaacCCTTGGCTTTCATCTCCACAc-3’。
The sgRNA-ADA-1S, sgRNA-ADA-1A, sgRNA-ADA-2S, sgRNA-ADA-2A, sgRNA-ADA-3S, sgRNA-ADA-3A, sgRNA-ADA-4S, sgRNA-ADA-4A, sgRNA-ADA-6S, sgRNA-ADA-6A, sgRNA-ADA-7S, sgRNA-ADA-7A, sgRNA-ADA-8S, sgRNA-ADA-8A, sgRNA-ADA-9S, sgRNA-ADA-9A are all single-stranded DNA molecules.
4. Editing efficiency comparison of different targets
1. Co-transfection
A first group: plasmid pKG-U6gRNA (ADA-g 1) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g plasmid pKG-U6gRNA (ADA-g 1): 1.238. Mu.g of plasmid pKG-GE3.
Second group: plasmid pKG-U6gRNA (ADA-g 2) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g plasmid pKG-U6gRNA (ADA-g 2): 1.238. Mu.g of plasmid pKG-GE3.
Third group: plasmid pKG-U6gRNA (ADA-g 3) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g plasmid pKG-U6gRNA (ADA-g 3): 1.238. Mu.g of plasmid pKG-GE3.
Fourth group: plasmid pKG-U6gRNA (ADA-g 4) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g plasmid pKG-U6gRNA (ADA-g 4): 1.238. Mu.g of plasmid pKG-GE3.
Fifth group: plasmid pKG-U6gRNA (ADA-g 6) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g plasmid pKG-U6gRNA (ADA-g 6): 1.238. Mu.g of plasmid pKG-GE3.
Sixth group: plasmid pKG-U6gRNA (ADA-g 7) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g plasmid pKG-U6gRNA (ADA-g 7): 1.238. Mu.g of plasmid pKG-GE3.
Seventh group: plasmid pKG-U6gRNA (ADA-g 8) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g plasmid pKG-U6gRNA (ADA-g 8): 1.238. Mu.g of plasmid pKG-GE3.
Eighth group: plasmid pKG-U6gRNA (ADA-g 9) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.762. Mu.g plasmid pKG-U6gRNA (ADA-g 9): 1.238. Mu.g of plasmid pKG-GE3.
Ninth group: pig primary fibroblasts were not subjected to any transfection procedure.
Co-transfection was performed by electric shock transfection using a mammalian nuclear transfection kit (Neon kit, thermofiser) and a Neon TM transfection system electrotransfection apparatus (parameters set to 1450V, 10ms, 3 pulses).
2. After the step 1 is completed, the culture is carried out for 16 to 18 hours by adopting the complete culture solution, and then the culture is carried out by replacing the new complete culture solution. The total incubation time was 48 hours.
3. After completion of step 2, cells were digested with trypsin and collected, genomic DNA was extracted, PCR amplification was performed using a primer set consisting of ADA-nnF229 and ADA-nnR456, followed by electrophoresis and sequencing, and the results are shown in FIG. 12.
The efficiency of editing of different targets was obtained by analyzing the sequencing peak plots using the synthetic ICE tool. The editing efficiency of the first to ninth sets of different targets was 19%, 17%, 9%, 0%, 2%, 35%, 29%, 20% and 0% in this order. The results showed that the sixth set of editing was most efficient, sgRNA ADA-g7 Is an optimal target point.
EXAMPLE 5 preparation of IL2RG and ADA Gene-edited monoclonal cells
1. Co-transfection
The plasmid pKG-U6gRNA (IL 2RG-g 7), plasmid pKG-U6gRNA (ADA-g 7) and plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.44. Mu.g plasmid pKG-U6gRNA (IL 2RG-g 7): 0.44. Mu.g plasmid pKG-U6gRNA (ADA-g 7): 2.12. Mu.g of plasmid pKG-GE3.
Co-transfection was performed by electric shock transfection using a mammalian nuclear transfection kit (Neon kit, thermofiser) and a Neon TM transfection system electrotransfection apparatus (parameters set to 1450V, 10ms, 3 pulses).
2. After the step 1 is completed, the culture is carried out for 16 to 18 hours by adopting the complete culture solution, and then the culture is carried out by replacing the new complete culture solution. The total incubation time was 48 hours.
3. After completion of step 2, the cells were digested with trypsin and collected, then washed with complete medium, then resuspended with complete medium, and then each individual monoclonal was individually picked and transferred to 96-well plates (1 cell per well, 200. Mu.l of complete medium per well) and cultured for 2 weeks (new complete medium was changed every 2-3 days).
4. After completion of step 3, cells were digested with trypsin and collected (about 2/3 of the resulting cells per well were inoculated into 6-well plates filled with complete culture medium, and the remaining 1/3 were collected in 1.5mL centrifuge tubes).
5. Taking the 6-hole plate in the step 4, culturing until the cells grow to 50% plumpness, digesting and collecting the cells by trypsin, and freezing the cells by using cell freezing solution (90% complete culture medium+10% DMSO, volume ratio).
6. Taking the centrifuge tube in the step 4, taking cells, extracting genome DNA, performing PCR amplification (respectively adopting a primer pair consisting of IL2RG-nF33 and IL2RG-nR460 and a primer pair consisting of ADA-nnF229 and ADA-nnR 456), and then performing electrophoresis. Porcine primary fibroblasts were used as wild-type controls.
7. After step 6 is completed, the PCR amplification product is recovered and sequenced.
The sequencing result of the primary fibroblast of the pig is only one, and the genotype of the primary fibroblast is homozygous wild type. If there are two kinds of sequencing results of a certain monoclonal cell, one kind is consistent with the sequencing result of the primary fibroblast of the pig, the other kind is mutated (mutation comprises deletion, insertion or substitution of one or more nucleotides) compared with the sequencing result of the primary fibroblast of the pig, the genotype of the monoclonal cell is heterozygous; if the sequencing result of a certain monoclonal cell is two, compared with the sequencing result of a primary fibroblast of a pig, the mutation (the mutation comprises deletion, insertion or replacement of one or more nucleotides) is generated, and the genotype of the monoclonal cell is a double-allele different mutant type; if the sequencing result of a monoclonal cell is one and a mutation (mutation includes deletion, insertion or substitution of one or more nucleotides) is generated compared with the sequencing result of a swine primary fibroblast, the genotype of the monoclonal cell is the same mutant type of the double allele; if the sequencing result of a certain monoclonal cell is one and is consistent with the sequencing result of a primary fibroblast of a pig, the genotype of the monoclonal cell is homozygous wild type.
The results of editing IL2RG gene are shown in Table 1. The genotypes of the monoclonal cells numbered 7, 26, 30 and 35 are the different mutants of the bi-allele. The genotypes of the monoclonal cells numbered 14, 21, 39 are heterozygous. The monoclonal cells numbered 15, 16, 19, 20, 28, 31, 49 all showed complex sets of peaks, and therefore, an effective sequence could not be obtained, and the genotype and specific form could not be determined, but it could be judged that gene editing occurred. The ratio of IL2RG gene editing monoclonal cells obtained was 14/53. Exemplary IL2RG sequencing peaks are shown in FIG. 13.
TABLE 1
The results of editing ADA genes are shown in Table 2. The genotypes of the monoclonal cells numbered 19, 26 are identical mutants of the bi-allele. The genotypes of the monoclonal cells numbered 35, 49 are the different mutants of the bi-allele. The genotype of the monoclonal cell numbered 5 is heterozygous. The monoclonal cells numbered 7, 9, 12, 15, 20, 21, 28, 30, 31, 45 all showed complex sets of peaks, and therefore, an effective sequence could not be obtained, and the genotype and specific form could not be determined, but it could be judged that gene editing occurred. The ratio of the obtained ADA gene editing monoclonal cells was 15/53. Exemplary peak sequencing patterns for ADA are shown in FIG. 14.
TABLE 2
8. After step 7 is completed, monoclonal cells from which IL2RG and ADA genes are knocked out simultaneously are selected.
By analysis, the monoclonal cells numbered 7, 15, 19, 20, 21, 26, 28, 30, 31, 35, 49 were monoclonal cells in which the IL2RG and ADA genes were knocked out simultaneously.
The present application is described in detail above. It will be apparent to those skilled in the art that the present application can be practiced in a wide range of equivalent parameters, concentrations, and conditions without departing from the spirit and scope of the application and without undue experimentation. While the application has been described with respect to specific embodiments, it will be appreciated that the application may be further modified. In general, this application is intended to cover any variations, uses, or adaptations of the application following, in general, the principles of the application and including such departures from the present disclosure as come within known or customary practice within the art to which the application pertains. The application of some of the basic features may be done in accordance with the scope of the claims that follow.
SEQUENCE LISTING
<110> Nanjing Kidney Gene engineering Co., ltd
<120> recombinant cell with IL2RG gene and ADA gene being knocked out in combination and application thereof in preparation of immunodeficiency pig model
<130> GNCYX202101
<160> 24
<170> PatentIn version 3.5
<210> 1
<211> 8484
<212> DNA
<213> Artificial sequence
<400> 1
gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag 60
ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga 120
aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat 180
atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga 240
cgaaacaccg ggtcttcgag aagacctgtt ttagagctag aaatagcaag ttaaaataag 300
gctagtccgt tatcaacttg aaaaagtggc accgagtcgg tgcttttttg ttttagagct 360
agaaatagca agttaaaata aggctagtcc gtttttagcg cgtgcgccaa ttctgcagac 420
aaatggctct agaggtaccc gttacataac ttacggtaaa tggcccgcct ggctgaccgc 480
ccaacgaccc ccgcccattg acgtcaatag taacgccaat agggactttc cattgacgtc 540
aatgggtgga gtatttacgg taaactgccc acttggcagt acatcaagtg tatcatatgc 600
caagtacgcc ccctattgac gtcaatgacg gtaaatggcc cgcctggcat tgtgcccagt 660
acatgacctt atgggacttt cctacttggc agtacatcta cgtattagtc atcgctatta 720
ccatggtcga ggtgagcccc acgttctgct tcactctccc catctccccc ccctccccac 780
ccccaatttt gtatttattt attttttaat tattttgtgc agcgatgggg gcgggggggg 840
ggggggggcg gggcgagggg cggggcgggg cgaggcggag aggtgcggcg gcagccaatc 900
agagcggcgc gctccgaaag tttcctttta tggcgaggcg gcggcggcgg cggccctata 960
aaaagcgaag cgcgcggcgg gcgggagtcg ctgcgcgctg ccttcgcccc gtgccccgct 1020
ccgccgccgc ctcgcgccgc ccgccccggc tctgactgac cgcgttactc ccacaggtga 1080
gcgggcggga cggcccttct cctccgggct gtaattagct gagcaagagg taagggttta 1140
agggatggtt ggttggtggg gtattaatgt ttaattacct ggagcacctg cctgaaatca 1200
ctttttttca ggttggaccg gtgccaccat ggactataag gaccacgacg gagactacaa 1260
ggatcatgat attgattaca aagacgatga cgataagatg gccccaaaga agaagcggaa 1320
ggtcggtatc cacggagtcc cagcagccga caagaagtac agcatcggcc tggacatcgg 1380
caccaactct gtgggctggg ccgtgatcac cgacgagtac aaggtgccca gcaagaaatt 1440
caaggtgctg ggcaacaccg accggcacag catcaagaag aacctgatcg gagccctgct 1500
gttcgacagc ggcgaaacag ccgaggccac ccggctgaag agaaccgcca gaagaagata 1560
caccagacgg aagaaccgga tctgctatct gcaagagatc ttcagcaacg agatggccaa 1620
ggtggacgac agcttcttcc acagactgga agagtccttc ctggtggaag aggataagaa 1680
gcacgagcgg caccccatct tcggcaacat cgtggacgag gtggcctacc acgagaagta 1740
ccccaccatc taccacctga gaaagaaact ggtggacagc accgacaagg ccgacctgcg 1800
gctgatctat ctggccctgg cccacatgat caagttccgg ggccacttcc tgatcgaggg 1860
cgacctgaac cccgacaaca gcgacgtgga caagctgttc atccagctgg tgcagaccta 1920
caaccagctg ttcgaggaaa accccatcaa cgccagcggc gtggacgcca aggccatcct 1980
gtctgccaga ctgagcaaga gcagacggct ggaaaatctg atcgcccagc tgcccggcga 2040
gaagaagaat ggcctgttcg gaaacctgat tgccctgagc ctgggcctga cccccaactt 2100
caagagcaac ttcgacctgg ccgaggatgc caaactgcag ctgagcaagg acacctacga 2160
cgacgacctg gacaacctgc tggcccagat cggcgaccag tacgccgacc tgtttctggc 2220
cgccaagaac ctgtccgacg ccatcctgct gagcgacatc ctgagagtga acaccgagat 2280
caccaaggcc cccctgagcg cctctatgat caagagatac gacgagcacc accaggacct 2340
gaccctgctg aaagctctcg tgcggcagca gctgcctgag aagtacaaag agattttctt 2400
cgaccagagc aagaacggct acgccggcta cattgacggc ggagccagcc aggaagagtt 2460
ctacaagttc atcaagccca tcctggaaaa gatggacggc accgaggaac tgctcgtgaa 2520
gctgaacaga gaggacctgc tgcggaagca gcggaccttc gacaacggca gcatccccca 2580
ccagatccac ctgggagagc tgcacgccat tctgcggcgg caggaagatt tttacccatt 2640
cctgaaggac aaccgggaaa agatcgagaa gatcctgacc ttccgcatcc cctactacgt 2700
gggccctctg gccaggggaa acagcagatt cgcctggatg accagaaaga gcgaggaaac 2760
catcaccccc tggaacttcg aggaagtggt ggacaagggc gcttccgccc agagcttcat 2820
cgagcggatg accaacttcg ataagaacct gcccaacgag aaggtgctgc ccaagcacag 2880
cctgctgtac gagtacttca ccgtgtataa cgagctgacc aaagtgaaat acgtgaccga 2940
gggaatgaga aagcccgcct tcctgagcgg cgagcagaaa aaggccatcg tggacctgct 3000
gttcaagacc aaccggaaag tgaccgtgaa gcagctgaaa gaggactact tcaagaaaat 3060
cgagtgcttc gactccgtgg aaatctccgg cgtggaagat cggttcaacg cctccctggg 3120
cacataccac gatctgctga aaattatcaa ggacaaggac ttcctggaca atgaggaaaa 3180
cgaggacatt ctggaagata tcgtgctgac cctgacactg tttgaggaca gagagatgat 3240
cgaggaacgg ctgaaaacct atgcccacct gttcgacgac aaagtgatga agcagctgaa 3300
gcggcggaga tacaccggct ggggcaggct gagccggaag ctgatcaacg gcatccggga 3360
caagcagtcc ggcaagacaa tcctggattt cctgaagtcc gacggcttcg ccaacagaaa 3420
cttcatgcag ctgatccacg acgacagcct gacctttaaa gaggacatcc agaaagccca 3480
ggtgtccggc cagggcgata gcctgcacga gcacattgcc aatctggccg gcagccccgc 3540
cattaagaag ggcatcctgc agacagtgaa ggtggtggac gagctcgtga aagtgatggg 3600
ccggcacaag cccgagaaca tcgtgatcga aatggccaga gagaaccaga ccacccagaa 3660
gggacagaag aacagccgcg agagaatgaa gcggatcgaa gagggcatca aagagctggg 3720
cagccagatc ctgaaagaac accccgtgga aaacacccag ctgcagaacg agaagctgta 3780
cctgtactac ctgcagaatg ggcgggatat gtacgtggac caggaactgg acatcaaccg 3840
gctgtccgac tacgatgtgg accatatcgt gcctcagagc tttctgaagg acgactccat 3900
cgacaacaag gtgctgacca gaagcgacaa gaaccggggc aagagcgaca acgtgccctc 3960
cgaagaggtc gtgaagaaga tgaagaacta ctggcggcag ctgctgaacg ccaagctgat 4020
tacccagaga aagttcgaca atctgaccaa ggccgagaga ggcggcctga gcgaactgga 4080
taaggccggc ttcatcaaga gacagctggt ggaaacccgg cagatcacaa agcacgtggc 4140
acagatcctg gactcccgga tgaacactaa gtacgacgag aatgacaagc tgatccggga 4200
agtgaaagtg atcaccctga agtccaagct ggtgtccgat ttccggaagg atttccagtt 4260
ttacaaagtg cgcgagatca acaactacca ccacgcccac gacgcctacc tgaacgccgt 4320
cgtgggaacc gccctgatca aaaagtaccc taagctggaa agcgagttcg tgtacggcga 4380
ctacaaggtg tacgacgtgc ggaagatgat cgccaagagc gagcaggaaa tcggcaaggc 4440
taccgccaag tacttcttct acagcaacat catgaacttt ttcaagaccg agattaccct 4500
ggccaacggc gagatccgga agcggcctct gatcgagaca aacggcgaaa ccggggagat 4560
cgtgtgggat aagggccggg attttgccac cgtgcggaaa gtgctgagca tgccccaagt 4620
gaatatcgtg aaaaagaccg aggtgcagac aggcggcttc agcaaagagt ctatcctgcc 4680
caagaggaac agcgataagc tgatcgccag aaagaaggac tgggacccta agaagtacgg 4740
cggcttcgac agccccaccg tggcctattc tgtgctggtg gtggccaaag tggaaaaggg 4800
caagtccaag aaactgaaga gtgtgaaaga gctgctgggg atcaccatca tggaaagaag 4860
cagcttcgag aagaatccca tcgactttct ggaagccaag ggctacaaag aagtgaaaaa 4920
ggacctgatc atcaagctgc ctaagtactc cctgttcgag ctggaaaacg gccggaagag 4980
aatgctggcc tctgccggcg aactgcagaa gggaaacgaa ctggccctgc cctccaaata 5040
tgtgaacttc ctgtacctgg ccagccacta tgagaagctg aagggctccc ccgaggataa 5100
tgagcagaaa cagctgtttg tggaacagca caagcactac ctggacgaga tcatcgagca 5160
gatcagcgag ttctccaaga gagtgatcct ggccgacgct aatctggaca aagtgctgtc 5220
cgcctacaac aagcaccggg ataagcccat cagagagcag gccgagaata tcatccacct 5280
gtttaccctg accaatctgg gagcccctgc cgccttcaag tactttgaca ccaccatcga 5340
ccggaagagg tacaccagca ccaaagaggt gctggacgcc accctgatcc accagagcat 5400
caccggcctg tacgagacac ggatcgacct gtctcagctg ggaggcgaca aaaggccggc 5460
ggccacgaaa aaggccggcc aggcaaaaaa gaaaaagtaa gaattcctag agctcgctga 5520
tcagcctcga ctgtgccttc tagttgccag ccatctgttg tttgcccctc ccccgtgcct 5580
tccttgaccc tggaaggtgc cactcccact gtcctttcct aataaaatga ggaaattgca 5640
tcgcattgtc tgagtaggtg tcattctatt ctggggggtg gggtggggca ggacagcaag 5700
ggggaggatt gggaagagaa tagcaggcat gctggggagc ggccgcagga acccctagtg 5760
atggagttgg ccactccctc tctgcgcgct cgctcgctca ctgaggccgg gcgaccaaag 5820
gtcgcccgac gcccgggctt tgcccgggcg gcctcagtga gcgagcgagc gcgcagctgc 5880
ctgcaggggc gcctgatgcg gtattttctc cttacgcatc tgtgcggtat ttcacaccgc 5940
atacgtcaaa gcaaccatag tacgcgccct gtagcggcgc attaagcgcg gcgggtgtgg 6000
tggttacgcg cagcgtgacc gctacacttg ccagcgcctt agcgcccgct cctttcgctt 6060
tcttcccttc ctttctcgcc acgttcgccg gctttccccg tcaagctcta aatcgggggc 6120
tccctttagg gttccgattt agtgctttac ggcacctcga ccccaaaaaa cttgatttgg 6180
gtgatggttc acgtagtggg ccatcgccct gatagacggt ttttcgccct ttgacgttgg 6240
agtccacgtt ctttaatagt ggactcttgt tccaaactgg aacaacactc aactctatct 6300
cgggctattc ttttgattta taagggattt tgccgatttc ggtctattgg ttaaaaaatg 6360
agctgattta acaaaaattt aacgcgaatt ttaacaaaat attaacgttt acaattttat 6420
ggtgcactct cagtacaatc tgctctgatg ccgcatagtt aagccagccc cgacacccgc 6480
caacacccgc tgacgcgccc tgacgggctt gtctgctccc ggcatccgct tacagacaag 6540
ctgtgaccgt ctccgggagc tgcatgtgtc agaggttttc accgtcatca ccgaaacgcg 6600
cgagacgaaa gggcctcgtg atacgcctat ttttataggt taatgtcatg ataataatgg 6660
tttcttagac gtcaggtggc acttttcggg gaaatgtgcg cggaacccct atttgtttat 6720
ttttctaaat acattcaaat atgtatccgc tcatgagaca ataaccctga taaatgcttc 6780
aataatattg aaaaaggaag agtatgagta ttcaacattt ccgtgtcgcc cttattccct 6840
tttttgcggc attttgcctt cctgtttttg ctcacccaga aacgctggtg aaagtaaaag 6900
atgctgaaga tcagttgggt gcacgagtgg gttacatcga actggatctc aacagcggta 6960
agatccttga gagttttcgc cccgaagaac gttttccaat gatgagcact tttaaagttc 7020
tgctatgtgg cgcggtatta tcccgtattg acgccgggca agagcaactc ggtcgccgca 7080
tacactattc tcagaatgac ttggttgagt actcaccagt cacagaaaag catcttacgg 7140
atggcatgac agtaagagaa ttatgcagtg ctgccataac catgagtgat aacactgcgg 7200
ccaacttact tctgacaacg atcggaggac cgaaggagct aaccgctttt ttgcacaaca 7260
tgggggatca tgtaactcgc cttgatcgtt gggaaccgga gctgaatgaa gccataccaa 7320
acgacgagcg tgacaccacg atgcctgtag caatggcaac aacgttgcgc aaactattaa 7380
ctggcgaact acttactcta gcttcccggc aacaattaat agactggatg gaggcggata 7440
aagttgcagg accacttctg cgctcggccc ttccggctgg ctggtttatt gctgataaat 7500
ctggagccgg tgagcgtgga agccgcggta tcattgcagc actggggcca gatggtaagc 7560
cctcccgtat cgtagttatc tacacgacgg ggagtcaggc aactatggat gaacgaaata 7620
gacagatcgc tgagataggt gcctcactga ttaagcattg gtaactgtca gaccaagttt 7680
actcatatat actttagatt gatttaaaac ttcattttta atttaaaagg atctaggtga 7740
agatcctttt tgataatctc atgaccaaaa tcccttaacg tgagttttcg ttccactgag 7800
cgtcagaccc cgtagaaaag atcaaaggat cttcttgaga tccttttttt ctgcgcgtaa 7860
tctgctgctt gcaaacaaaa aaaccaccgc taccagcggt ggtttgtttg ccggatcaag 7920
agctaccaac tctttttccg aaggtaactg gcttcagcag agcgcagata ccaaatactg 7980
ttcttctagt gtagccgtag ttaggccacc acttcaagaa ctctgtagca ccgcctacat 8040
acctcgctct gctaatcctg ttaccagtgg ctgctgccag tggcgataag tcgtgtctta 8100
ccgggttgga ctcaagacga tagttaccgg ataaggcgca gcggtcgggc tgaacggggg 8160
gttcgtgcac acagcccagc ttggagcgaa cgacctacac cgaactgaga tacctacagc 8220
gtgagctatg agaaagcgcc acgcttcccg aagggagaaa ggcggacagg tatccggtaa 8280
gcggcagggt cggaacagga gagcgcacga gggagcttcc agggggaaac gcctggtatc 8340
tttatagtcc tgtcgggttt cgccacctct gacttgagcg tcgatttttg tgatgctcgt 8400
caggggggcg gagcctatgg aaaaacgcca gcaacgcggc ctttttacgg ttcctggcct 8460
tttgctggcc ttttgctcac atgt 8484
<210> 2
<211> 10476
<212> DNA
<213> Artificial sequence
<400> 2
gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag 60
ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga 120
aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat 180
atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga 240
cgaaacaccg ggtcttcgag aagacctgtt ttagagctag aaatagcaag ttaaaataag 300
gctagtccgt tatcaacttg aaaaagtggc accgagtcgg tgcttttttc tagcgcgtgc 360
gccaattctg cagacaaatg gctctagagg tacccgttac ataacttacg gtaaatggcc 420
cgcctggctg accgcccaac gacccccgcc cattgacgtc aatagtaacg ccaataggga 480
ctttccattg acgtcaatgg gtggagtatt tacggtaaac tgcccacttg gcagtacatc 540
aagtgtatca tatgccaagt acgcccccta ttgacgtcaa tgacggtaaa tggcccgcct 600
ggcattgtgc ccagtacatg accttatggg actttcctac ttggcagtac atctacgtat 660
tagtcatcgc tattaccatg ggggcagagc gcacatcgcc cacagtcccc gagaagttgg 720
ggggaggggt cggcaattga tccggtgcct agagaaggtg gcgcggggta aactgggaaa 780
gtgatgtcgt gtactggctc cgcctttttc ccgagggtgg gggagaaccg tatataagtg 840
cagtagtcgc cgtgaacgtt ctttttcgca acgggtttgc cgccagaaca caggttggac 900
cggtgccacc atggactata aggaccacga cggagactac aaggatcatg atattgatta 960
caaagacgat gacgataaga tggcccccaa aaagaaacga aaggtgggtg ggtccccaaa 1020
gaagaagcgg aaggtcggta tccacggagt cccagcagcc gacaagaagt acagcatcgg 1080
cctggacatc ggcaccaact ctgtgggctg ggccgtgatc accgacgagt acaaggtgcc 1140
cagcaagaaa ttcaaggtgc tgggcaacac cgaccggcac agcatcaaga agaacctgat 1200
cggagccctg ctgttcgaca gcggcgaaac agccgaggcc acccggctga agagaaccgc 1260
cagaagaaga tacaccagac ggaagaaccg gatctgctat ctgcaagaga tcttcagcaa 1320
cgagatggcc aaggtggacg acagcttctt ccacagactg gaagagtcct tcctggtgga 1380
agaggataag aagcacgagc ggcaccccat cttcggcaac atcgtggacg aggtggccta 1440
ccacgagaag taccccacca tctaccacct gagaaagaaa ctggtggaca gcaccgacaa 1500
ggccgacctg cggctgatct atctggccct ggcccacatg atcaagttcc ggggccactt 1560
cctgatcgag ggcgacctga accccgacaa cagcgacgtg gacaagctgt tcatccagct 1620
ggtgcagacc tacaaccagc tgttcgagga aaaccccatc aacgccagcg gcgtggacgc 1680
caaggccatc ctgtctgcca gactgagcaa gagcagacgg ctggaaaatc tgatcgccca 1740
gctgcccggc gagaagaaga atggcctgtt cggaaacctg attgccctga gcctgggcct 1800
gacccccaac ttcaagagca acttcgacct ggccgaggat gccaaactgc agctgagcaa 1860
ggacacctac gacgacgacc tggacaacct gctggcccag atcggcgacc agtacgccga 1920
cctgtttctg gccgccaaga acctgtccga cgccatcctg ctgagcgaca tcctgagagt 1980
gaacaccgag atcaccaagg cccccctgag cgcctctatg atcaagagat acgacgagca 2040
ccaccaggac ctgaccctgc tgaaagctct cgtgcggcag cagctgcctg agaagtacaa 2100
agagattttc ttcgaccaga gcaagaacgg ctacgccggc tacattgacg gcggagccag 2160
ccaggaagag ttctacaagt tcatcaagcc catcctggaa aagatggacg gcaccgagga 2220
actgctcgtg aagctgaaca gagaggacct gctgcggaag cagcggacct tcgacaacgg 2280
cagcatcccc caccagatcc acctgggaga gctgcacgcc attctgcggc ggcaggaaga 2340
tttttaccca ttcctgaagg acaaccggga aaagatcgag aagatcctga ccttccgcat 2400
cccctactac gtgggccctc tggccagggg aaacagcaga ttcgcctgga tgaccagaaa 2460
gagcgaggaa accatcaccc cctggaactt cgaggaagtg gtggacaagg gcgcttccgc 2520
ccagagcttc atcgagcgga tgaccaactt cgataagaac ctgcccaacg agaaggtgct 2580
gcccaagcac agcctgctgt acgagtactt caccgtgtat aacgagctga ccaaagtgaa 2640
atacgtgacc gagggaatga gaaagcccgc cttcctgagc ggcgagcaga aaaaggccat 2700
cgtggacctg ctgttcaaga ccaaccggaa agtgaccgtg aagcagctga aagaggacta 2760
cttcaagaaa atcgagtgct tcgactccgt ggaaatctcc ggcgtggaag atcggttcaa 2820
cgcctccctg ggcacatacc acgatctgct gaaaattatc aaggacaagg acttcctgga 2880
caatgaggaa aacgaggaca ttctggaaga tatcgtgctg accctgacac tgtttgagga 2940
cagagagatg atcgaggaac ggctgaaaac ctatgcccac ctgttcgacg acaaagtgat 3000
gaagcagctg aagcggcgga gatacaccgg ctggggcagg ctgagccgga agctgatcaa 3060
cggcatccgg gacaagcagt ccggcaagac aatcctggat ttcctgaagt ccgacggctt 3120
cgccaacaga aacttcatgc agctgatcca cgacgacagc ctgaccttta aagaggacat 3180
ccagaaagcc caggtgtccg gccagggcga tagcctgcac gagcacattg ccaatctggc 3240
cggcagcccc gccattaaga agggcatcct gcagacagtg aaggtggtgg acgagctcgt 3300
gaaagtgatg ggccggcaca agcccgagaa catcgtgatc gaaatggcca gagagaacca 3360
gaccacccag aagggacaga agaacagccg cgagagaatg aagcggatcg aagagggcat 3420
caaagagctg ggcagccaga tcctgaaaga acaccccgtg gaaaacaccc agctgcagaa 3480
cgagaagctg tacctgtact acctgcagaa tgggcgggat atgtacgtgg accaggaact 3540
ggacatcaac cggctgtccg actacgatgt ggaccatatc gtgcctcaga gctttctgaa 3600
ggacgactcc atcgacaaca aggtgctgac cagaagcgac aagaaccggg gcaagagcga 3660
caacgtgccc tccgaagagg tcgtgaagaa gatgaagaac tactggcggc agctgctgaa 3720
cgccaagctg attacccaga gaaagttcga caatctgacc aaggccgaga gaggcggcct 3780
gagcgaactg gataaggccg gcttcatcaa gagacagctg gtggaaaccc ggcagatcac 3840
aaagcacgtg gcacagatcc tggactcccg gatgaacact aagtacgacg agaatgacaa 3900
gctgatccgg gaagtgaaag tgatcaccct gaagtccaag ctggtgtccg atttccggaa 3960
ggatttccag ttttacaaag tgcgcgagat caacaactac caccacgccc acgacgccta 4020
cctgaacgcc gtcgtgggaa ccgccctgat caaaaagtac cctaagctgg aaagcgagtt 4080
cgtgtacggc gactacaagg tgtacgacgt gcggaagatg atcgccaaga gcgagcagga 4140
aatcggcaag gctaccgcca agtacttctt ctacagcaac atcatgaact ttttcaagac 4200
cgagattacc ctggccaacg gcgagatccg gaagcggcct ctgatcgaga caaacggcga 4260
aaccggggag atcgtgtggg ataagggccg ggattttgcc accgtgcgga aagtgctgag 4320
catgccccaa gtgaatatcg tgaaaaagac cgaggtgcag acaggcggct tcagcaaaga 4380
gtctatcctg cccaagagga acagcgataa gctgatcgcc agaaagaagg actgggaccc 4440
taagaagtac ggcggcttcg acagccccac cgtggcctat tctgtgctgg tggtggccaa 4500
agtggaaaag ggcaagtcca agaaactgaa gagtgtgaaa gagctgctgg ggatcaccat 4560
catggaaaga agcagcttcg agaagaatcc catcgacttt ctggaagcca agggctacaa 4620
agaagtgaaa aaggacctga tcatcaagct gcctaagtac tccctgttcg agctggaaaa 4680
cggccggaag agaatgctgg cctctgccgg cgaactgcag aagggaaacg aactggccct 4740
gccctccaaa tatgtgaact tcctgtacct ggccagccac tatgagaagc tgaagggctc 4800
ccccgaggat aatgagcaga aacagctgtt tgtggaacag cacaagcact acctggacga 4860
gatcatcgag cagatcagcg agttctccaa gagagtgatc ctggccgacg ctaatctgga 4920
caaagtgctg tccgcctaca acaagcaccg ggataagccc atcagagagc aggccgagaa 4980
tatcatccac ctgtttaccc tgaccaatct gggagcccct gccgccttca agtactttga 5040
caccaccatc gaccggaaga ggtacaccag caccaaagag gtgctggacg ccaccctgat 5100
ccaccagagc atcaccggcc tgtacgagac acggatcgac ctgtctcagc tgggaggcga 5160
caaaaggccg gcggccacga aaaaggccgg ccaggcaaaa aagaaaaagg gcggctccaa 5220
gcggcctgcc gcgacgaaga aagcgggaca ggccaagaaa aagaaaggat ccggcgcaac 5280
aaacttctct ctgctgaaac aagccggaga tgtcgaagag aatcctggac cggtgagcaa 5340
gggcgaggag ctgttcaccg gggtggtgcc catcctggtc gagctggacg gcgacgtaaa 5400
cggccacaag ttcagcgtgt ccggcgaggg cgagggcgat gccacctacg gcaagctgac 5460
cctgaagttc atctgcacca ccggcaagct gcccgtgccc tggcccaccc tcgtgaccac 5520
cctgacctac ggcgtgcagt gcttcagccg ctaccccgac cacatgaagc agcacgactt 5580
cttcaagtcc gccatgcccg aaggctacgt ccaggagcgc accatcttct tcaaggacga 5640
cggcaactac aagacccgcg ccgaggtgaa gttcgagggc gacaccctgg tgaaccgcat 5700
cgagctgaag ggcatcgact tcaaggagga cggcaacatc ctggggcaca agctggagta 5760
caactacaac agccacaacg tctatatcat ggccgacaag cagaagaacg gcatcaaggt 5820
gaacttcaag atccgccaca acatcgagga cggcagcgtg cagctcgccg accactacca 5880
gcagaacacc cccatcggcg acggccccgt gctgctgccc gacaaccact acctgagcac 5940
ccagtccgcc ctgagcaaag accccaacga gaagcgcgat cacatggtcc tgctggagtt 6000
cgtgaccgcc gccgggatca ctctcggcat ggacgagctg tacaagggct ccggcgaggg 6060
caggggaagt cttctaacat gcggggacgt ggaggaaaat cccggcccaa ccgagtacaa 6120
gcccacggtg cgcctcgcca cccgcgacga cgtccccagg gccgtacgca ccctcgccgc 6180
cgcgttcgcc gactaccccg ccacgcgcca caccgtcgat ccggaccgcc acatcgagcg 6240
ggtcaccgag ctgcaagaac tcttcctcac gcgcgtcggg ctcgacatcg gcaaggtgtg 6300
ggtcgcggac gacggcgccg cggtggcggt ctggaccacg ccggagagcg tcgaagcggg 6360
ggcggtgttc gccgagatcg gcccgcgcat ggccgagttg agcggttccc ggctggccgc 6420
gcagcaacag atggaaggcc tcctggcgcc gcaccggccc aaggagcccg cgtggttcct 6480
ggccaccgtc ggagtctcgc ccgaccacca gggcaagggt ctgggcagcg ccgtcgtgct 6540
ccccggagtg gaggcggccg agcgcgccgg ggtgcccgcc ttcctggaga cctccgcgcc 6600
ccgcaacctc cccttctacg agcggctcgg cttcaccgtc accgccgacg tcgaggtgcc 6660
cgaaggaccg cgcacctggt gcatgacccg caagcccggt gcctgaacgc gttaagtcga 6720
caatcaacct ctggattaca aaatttgtga aagattgact ggtattctta actatgttgc 6780
tccttttacg ctatgtggat acgctgcttt aatgcctttg tatcatgcta ttgcttcccg 6840
tatggctttc attttctcct ccttgtataa atcctggttg ctgtctcttt atgaggagtt 6900
gtggcccgtt gtcaggcaac gtggcgtggt gtgcactgtg tttgctgacg caacccccac 6960
tggttggggc attgccacca cctgtcagct cctttccggg actttcgctt tccccctccc 7020
tattgccacg gcggaactca tcgccgcctg ccttgcccgc tgctggacag gggctcggct 7080
gttgggcact gacaattccg tggtgttgtc ggggaaatca tcgtcctttc cttggctgct 7140
cgcctgtgtt gccacctgga ttctgcgcgg gacgtccttc tgctacgtcc cttcggccct 7200
caatccagcg gaccttcctt cccgcggcct gctgccggct ctgcggcctc ttccgcgtct 7260
tcgccttcgc cctcagacga gtcggatctc cctttgggcc gcctccccgc gtcgacttta 7320
agaccaatga cttacaaggc agctgtagat cttagccact ttttaaaaga aaagggggga 7380
ctggaagggc taattcactc ccaacgaaga caagatctgc tttttgcttg tactgggtct 7440
ctctggttag accagatctg agcctgggag ctctctggct aactagggaa cccactgctt 7500
aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt gtgcccgtct gttgtgtgac 7560
tctggtaact agagatccct cagacccttt tagtcagtgt ggaaaatctc tagcagggcc 7620
cgtttaaacc cgctgatcag cctcgactgt gccttctagt tgccagccat ctgttgtttg 7680
cccctccccc gtgccttcct tgaccctgga aggtgccact cccactgtcc tttcctaata 7740
aaatgaggaa attgcatcgc attgtctgag taggtgtcat tctattctgg ggggtggggt 7800
ggggcaggac agcaaggggg aggattggga agacaatagc aggcatgctg gggatgcggt 7860
gggctctatg gcctgcaggg gcgcctgatg cggtattttc tccttacgca tctgtgcggt 7920
atttcacacc gcatacgtca aagcaaccat agtacgcgcc ctgtagcggc gcattaagcg 7980
cggcgggtgt ggtggttacg cgcagcgtga ccgctacact tgccagcgcc ttagcgcccg 8040
ctcctttcgc tttcttccct tcctttctcg ccacgttcgc cggctttccc cgtcaagctc 8100
taaatcgggg gctcccttta gggttccgat ttagtgcttt acggcacctc gaccccaaaa 8160
aacttgattt gggtgatggt tcacgtagtg ggccatcgcc ctgatagacg gtttttcgcc 8220
ctttgacgtt ggagtccacg ttctttaata gtggactctt gttccaaact ggaacaacac 8280
tcaactctat ctcgggctat tcttttgatt tataagggat tttgccgatt tcggtctatt 8340
ggttaaaaaa tgagctgatt taacaaaaat ttaacgcgaa ttttaacaaa atattaacgt 8400
ttacaatttt atggtgcact ctcagtacaa tctgctctga tgccgcatag ttaagccagc 8460
cccgacaccc gccaacaccc gctgacgcgc cctgacgggc ttgtctgctc ccggcatccg 8520
cttacagaca agctgtgacc gtctccggga gctgcatgtg tcagaggttt tcaccgtcat 8580
caccgaaacg cgcgagacga aagggcctcg tgatacgcct atttttatag gttaatgtca 8640
tgataataat ggtttcttag acgtcaggtg gcacttttcg gggaaatgtg cgcggaaccc 8700
ctatttgttt atttttctaa atacattcaa atatgtatcc gctcatgaga caataaccct 8760
gataaatgct tcaataatat tgaaaaagga agagtatgag tattcaacat ttccgtgtcg 8820
cccttattcc cttttttgcg gcattttgcc ttcctgtttt tgctcaccca gaaacgctgg 8880
tgaaagtaaa agatgctgaa gatcagttgg gtgcacgagt gggttacatc gaactggatc 8940
tcaacagcgg taagatcctt gagagttttc gccccgaaga acgttttcca atgatgagca 9000
cttttaaagt tctgctatgt ggcgcggtat tatcccgtat tgacgccggg caagagcaac 9060
tcggtcgccg catacactat tctcagaatg acttggttga gtactcacca gtcacagaaa 9120
agcatcttac ggatggcatg acagtaagag aattatgcag tgctgccata accatgagtg 9180
ataacactgc ggccaactta cttctgacaa cgatcggagg accgaaggag ctaaccgctt 9240
ttttgcacaa catgggggat catgtaactc gccttgatcg ttgggaaccg gagctgaatg 9300
aagccatacc aaacgacgag cgtgacacca cgatgcctgt agcaatggca acaacgttgc 9360
gcaaactatt aactggcgaa ctacttactc tagcttcccg gcaacaatta atagactgga 9420
tggaggcgga taaagttgca ggaccacttc tgcgctcggc ccttccggct ggctggttta 9480
ttgctgataa atctggagcc ggtgagcgtg gaagccgcgg tatcattgca gcactggggc 9540
cagatggtaa gccctcccgt atcgtagtta tctacacgac ggggagtcag gcaactatgg 9600
atgaacgaaa tagacagatc gctgagatag gtgcctcact gattaagcat tggtaactgt 9660
cagaccaagt ttactcatat atactttaga ttgatttaaa acttcatttt taatttaaaa 9720
ggatctaggt gaagatcctt tttgataatc tcatgaccaa aatcccttaa cgtgagtttt 9780
cgttccactg agcgtcagac cccgtagaaa agatcaaagg atcttcttga gatccttttt 9840
ttctgcgcgt aatctgctgc ttgcaaacaa aaaaaccacc gctaccagcg gtggtttgtt 9900
tgccggatca agagctacca actctttttc cgaaggtaac tggcttcagc agagcgcaga 9960
taccaaatac tgttcttcta gtgtagccgt agttaggcca ccacttcaag aactctgtag 10020
caccgcctac atacctcgct ctgctaatcc tgttaccagt ggctgctgcc agtggcgata 10080
agtcgtgtct taccgggttg gactcaagac gatagttacc ggataaggcg cagcggtcgg 10140
gctgaacggg gggttcgtgc acacagccca gcttggagcg aacgacctac accgaactga 10200
gatacctaca gcgtgagcta tgagaaagcg ccacgcttcc cgaagggaga aaggcggaca 10260
ggtatccggt aagcggcagg gtcggaacag gagagcgcac gagggagctt ccagggggaa 10320
acgcctggta tctttatagt cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt 10380
tgtgatgctc gtcagggggg cggagcctat ggaaaaacgc cagcaacgcg gcctttttac 10440
ggttcctggc cttttgctgg ccttttgctc acatgt 10476
<210> 3
<211> 3120
<212> DNA
<213> Artificial sequence
<400> 3
gacgaaaggg cctcgtgata cgcctatttt tataggttaa tgtcatgata ataatggttt 60
cttagacgtc aggtggcact tttcggggaa atgtgcgcgg aacccctatt tgtttatttt 120
tctaaataca ttcaaatatg tatccgctca tgagacaata accctgataa atgcttcaat 180
aatattgaaa aaggaagagt atgagtattc aacatttccg tgtcgccctt attccctttt 240
ttgcggcatt ttgccttcct gtttttgctc acccagaaac gctggtgaaa gtaaaagatg 300
ctgaagatca gttgggtgca cgagtgggtt acatcgaact ggatctcaac agcggtaaga 360
tccttgagag ttttcgcccc gaagaacgtt ttccaatgat gagcactttt aaagttctgc 420
tatgtggcgc ggtattatcc cgtattgacg ccgggcaaga gcaactcggt cgccgcatac 480
actattctca gaatgacttg gttgagtact caccagtcac agaaaagcat cttacggatg 540
gcatgacagt aagagaatta tgcagtgctg ccataaccat gagtgataac actgcggcca 600
acttacttct gacaacgatc ggaggaccga aggagctaac cgcttttttg cacaacatgg 660
gggatcatgt aactcgcctt gatcgttggg aaccggagct gaatgaagcc ataccaaacg 720
acgagcgtga caccacgatg cctgtagcaa tggcaacaac gttgcgcaaa ctattaactg 780
gcgaactact tactctagct tcccggcaac aattaataga ctggatggag gcggataaag 840
ttgcaggacc acttctgcgc tcggcccttc cggctggctg gtttattgct gataaatctg 900
gagccggtga gcgtgggtct cgcggtatca ttgcagcact ggggccagat ggtaagccct 960
cccgtatcgt agttatctac acgacgggga gtcaggcaac tatggatgaa cgaaatagac 1020
agatcgctga gataggtgcc tcactgatta agcattggta actgtcagac caagtttact 1080
catatatact ttagattgat ttaaaacttc atttttaatt taaaaggatc taggtgaaga 1140
tcctttttga taatctcatg accaaaatcc cttaacgtga gttttcgttc cactgagcgt 1200
cagaccccgt agaaaagatc aaaggatctt cttgagatcc tttttttctg cgcgtaatct 1260
gctgcttgca aacaaaaaaa ccaccgctac cagcggtggt ttgtttgccg gatcaagagc 1320
taccaactct ttttccgaag gtaactggct tcagcagagc gcagatacca aatactgttc 1380
ttctagtgta gccgtagtta ggccaccact tcaagaactc tgtagcaccg cctacatacc 1440
tcgctctgct aatcctgtta ccagtggctg ctgccagtgg cgataagtcg tgtcttaccg 1500
ggttggactc aagacgatag ttaccggata aggcgcagcg gtcgggctga acggggggtt 1560
cgtgcacaca gcccagcttg gagcgaacga cctacaccga actgagatac ctacagcgtg 1620
agctatgaga aagcgccacg cttcccgaag ggagaaaggc ggacaggtat ccggtaagcg 1680
gcagggtcgg aacaggagag cgcacgaggg agcttccagg gggaaacgcc tggtatcttt 1740
atagtcctgt cgggtttcgc cacctctgac ttgagcgtcg atttttgtga tgctcgtcag 1800
gggggcggag cctatggaaa aacgccagca acgcggcctt tttacggttc ctggcctttt 1860
gctggccttt tgctcacatg ttctttcctg cgttatcccc tgattctgtg gataaccgta 1920
ttaccgcctt tgagtgagct gataccgctc gccgcagccg aacgaccgag cgcagcgagt 1980
cagtgagcga ggaagcggaa gagcgcccaa tacgcaaacc gcctctcccc gcgcgttggc 2040
cgattcatta atgcagctgg cacgacaggt ttcccgactg gaaagcgggc agtgagcgca 2100
acgcaattaa tgtgagttag ctcactcatt aggcacccca ggctttacac tttatgcttc 2160
cggctcgtat gttgtgtgga attgtgagcg gataacaatt tcacacagga aacagctatg 2220
accatgatta cgccaagctt gcatgcaggc ctctgcagtc gacgggcccg ggatccgatg 2280
ataaacatgt gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc 2340
tgttagagag ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac 2400
gtgacgtaga aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat 2460
ggactatcat atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt 2520
gtggaaagga cgaaacaccg ggtcttcgag aagacctgtt ttagagctag aaatagcaag 2580
ttaaaataag gctagtccgt tatcaacttg aaaaagtggc accgagtcgg tgcttttttc 2640
tagcgcgtgc gccaattctg cagacaaatg gctctagagg tacccataga tctagatgca 2700
ttcgcgaggt accgagctcg aattcactgg ccgtcgtttt acaacgtcgt gactgggaaa 2760
accctggcgt tacccaactt aatcgccttg cagcacatcc ccctttcgcc agctggcgta 2820
atagcgaaga ggcccgcacc gatcgccctt cccaacagtt gcgcagcctg aatggcgaat 2880
ggcgcctgat gcggtatttt ctccttacgc atctgtgcgg tatttcacac cgcatatggt 2940
gcactctcag tacaatctgc tctgatgccg catagttaag ccagccccga cacccgccaa 3000
cacccgctga cgcgccctga cgggcttgtc tgctcccggc atccgcttac agacaagctg 3060
tgaccgtctc cgggagctgc atgtgtcaga ggttttcacc gtcatcaccg aaacgcgcga 3120
<210> 4
<211> 368
<212> PRT
<213> Sus scrofa
<400> 4
Met Leu Lys Pro Pro Leu Pro Val Lys Ser Leu Leu Phe Leu Gln Leu
1 5 10 15
Pro Leu Leu Gly Val Gly Leu Asn Pro Lys Val Leu Thr His Ser Gly
20 25 30
Asn Glu Asp Ile Thr Ala Asp Phe Leu Leu Leu Ser Thr Pro Pro Gly
35 40 45
Thr Leu Asn Val Ser Thr Leu Pro Leu Pro Lys Val Gln Cys Phe Val
50 55 60
Phe Asn Val Glu Tyr Met Asn Cys Thr Trp Asn Ser Ser Ser Glu Leu
65 70 75 80
Gln Pro Thr Asn Leu Thr Leu His Tyr Trp Tyr Lys Thr Ser Asn Asp
85 90 95
Asp Lys Val Gln Glu Cys Gly His Tyr Leu Phe Ser Glu Gly Ile Thr
100 105 110
Ser Gly Cys Trp Phe Gly Lys Glu Glu Ile Arg Leu Tyr Gln Thr Phe
115 120 125
Val Val Gln Leu Gln Asp Pro Arg Glu Pro Arg Arg Gln Asp Pro Gln
130 135 140
Thr Leu Lys Leu Gln Asp Leu Val Ile Pro Trp Ala Pro Ala Asn Leu
145 150 155 160
Thr Leu Arg Thr Leu Ser Glu Ser Gln Leu Glu Leu Asn Trp Ser Asn
165 170 175
Arg Tyr Leu Asp His Cys Leu Glu His Leu Val Gln Tyr Arg Ser Asp
180 185 190
Arg Asp Arg Ser Trp Thr Glu Gln Ser Val Asp His Arg Gln Ser Phe
195 200 205
Ser Leu Pro Ser Val Asp Ala Gln Lys Leu Tyr Thr Phe Arg Val Arg
210 215 220
Ser Arg Tyr Asn Pro Leu Cys Gly Ser Ala Gln Arg Trp Ser Asp Trp
225 230 235 240
Ser His Pro Ile His Trp Gly Asn Thr Ser Lys Glu Asn Pro Leu Leu
245 250 255
Phe Ala Leu Glu Ala Val Leu Ile Pro Leu Gly Ser Met Gly Leu Ile
260 265 270
Val Gly Leu Met Cys Val Tyr Cys Trp Leu Glu Arg Thr Met Pro Arg
275 280 285
Ile Pro Thr Leu Lys Asn Leu Glu Asp Leu Val Thr Glu Tyr His Gly
290 295 300
Asn Phe Ser Ala Trp Ser Gly Val Ser Lys Gly Leu Ala Glu Ser Leu
305 310 315 320
Gln Pro Asp Tyr Ser Glu Arg Leu Cys His Val Ser Glu Ile Ser Pro
325 330 335
Lys Gly Gly Ala Leu Gly Glu Gly Pro Gly Gly Ser Pro Cys Ser Gln
340 345 350
His Ser Pro Tyr Trp Ala Pro Pro Cys Tyr Thr Leu Lys Pro Glu Thr
355 360 365
<210> 5
<211> 1185
<212> DNA
<213> Sus scrofa
<400> 5
aaattttaga gtactggggg gagggcaagg ggaagggttc cctgcctagt gctgcttctt 60
cttctgacca tcatgtcttc cctttgcctc ccccacttca ttttctcccc gtcctagatt 120
tcctcctgct ctctacaccc cctgggactc tcaacgtttc cactctaccc ctcccaaagg 180
ttcagtgttt tgtgttcaat gttgagtaca tgaattgcac ttggaacagc agctctgagc 240
tccagcctac caacctaact ctgcactact ggtatgagaa gggaagaggg gatatagcac 300
aggggaggga ggaagaggcg ctgggctaga tgtgagagat tgtgtgagga ccaagaaaga 360
ggttagccag catcccaggc ttcccactat attctcgtgg ggtaagtcat aagtcagttc 420
gtaggagctg aggctggact gtggaatctg tggtattcac atttacctca ctgttattct 480
tccttgaaat ccttctctag gtacaagacc tctaatgatg ataaagtcca ggagtgtggc 540
cactatctat tctctgaagg gatcacttct ggctgttggt ttggaaaaga ggagatccgc 600
ctctaccaaa catttgttgt ccagctccag gacccacggg aacccaggag gcaggaccca 660
cagacgctaa aactacagga tctgggtaat ttggaaatgg ggagggtcaa gggatattgt 720
gggggtattg gtgtatgtag agtggtattc ttgcaccata agggtacttg ggcagaaaag 780
aagaagtgag ggatccaatg gggtcgggag gagggatcag gagcactgcc ctcaggatcc 840
tgacttgtct aggccagggg aatgaccaca cacgcacaca tatctccagt gatcccctgg 900
gcgccggcga atctgaccct tcgcaccctg agtgaatccc agctagaact cagctggagc 960
aaccgatact tggaccactg tttggagcac ctcgtgcaat accggagtga ccgggaccgc 1020
agctggactg tgagtgagtg ggaacagcag ctggggctga gcaagtgggg ataaaggatt 1080
caatcagtcc agtaggaagg cttgattccc agctcctatt ctctgcatcc tggtgcctct 1140
gcccaccttc tcccctcctt ggactccttt ctctgtcgtc accat 1185
<210> 6
<211> 100
<212> RNA
<213> Artificial sequence
<400> 6
ccuguaguuu uagcgucugu guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 7
<211> 100
<212> RNA
<213> Artificial sequence
<400> 7
caacaaaugu uugguagagg guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 8
<211> 100
<212> RNA
<213> Artificial sequence
<400> 8
gaugauaaag uccaggagug guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 9
<211> 100
<212> RNA
<213> Artificial sequence
<400> 9
cuggacuuua ucaucauuag guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 10
<211> 100
<212> RNA
<213> Artificial sequence
<400> 10
uuguccagcu ccaggaccca guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 11
<211> 100
<212> RNA
<213> Artificial sequence
<400> 11
ggccacuauc uauucucuga guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 12
<211> 100
<212> RNA
<213> Artificial sequence
<400> 12
ucccuucaga gaauagauag guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 13
<211> 100
<212> RNA
<213> Artificial sequence
<400> 13
aacauuuguu guccagcucc guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 14
<211> 100
<212> RNA
<213> Artificial sequence
<400> 14
uguccagcuc caggacccac guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 15
<211> 364
<212> PRT
<213> Sus scrofa
<400> 15
Met Thr Gln Thr Pro Ala Phe Asp Lys Pro Lys Val Glu Leu His Val
1 5 10 15
His Leu Asp Gly Ala Ile Lys Pro Glu Thr Ile Leu Tyr Tyr Gly Arg
20 25 30
Lys Arg Gly Ile Ala Leu Pro Ala Asn Thr Pro Glu Glu Leu Gln Asp
35 40 45
Val Ile Gly Met Asp Lys Pro Leu Ser Leu Pro Ala Phe Leu Ala Lys
50 55 60
Phe Asp Tyr Tyr Met Pro Ala Ile Ala Xaa Gly Leu Pro Glu Ala Val
65 70 75 80
Lys Arg Ile Ala Tyr Glu Phe Val Glu Met Lys Ala Lys Glu Gly Val
85 90 95
Val Tyr Val Glu Val Arg Tyr Ser Pro His Leu Leu Ala Asn Ser Lys
100 105 110
Val Glu Pro Ile Pro Trp Asn Gln Ala Glu Gly Asp Leu Thr Pro Asp
115 120 125
Glu Val Val Asp Leu Val Gly Gln Gly Leu Gln Glu Gly Glu Arg Asp
130 135 140
Phe Gly Val Lys Val Arg Ser Ile Leu Cys Cys Met Arg His Gln Pro
145 150 155 160
Thr Trp Ser Pro Glu Val Val Glu Leu Cys Lys Lys Tyr Arg Gln Gln
165 170 175
Thr Val Val Ala Ile Asp Leu Ala Gly Asp Glu Thr Ile Glu Gly Ser
180 185 190
Ser Leu Phe Pro Gly His Val Gln Ala Tyr Glu Glu Ala Val Lys Ser
195 200 205
Gly Val His Arg Thr Val His Ala Gly Glu Val Gly Ser Ala Glu Val
210 215 220
Val Lys Glu Ala Val Asp Thr Leu Lys Thr Glu Arg Leu Gly His Gly
225 230 235 240
Tyr His Thr Leu Glu Asp Glu Ala Leu Tyr Thr Arg Leu Arg Gln Ala
245 250 255
Asn Met His Phe Glu Val Cys Pro Trp Ser Ser Tyr Leu Thr Gly Ala
260 265 270
Trp Lys Pro Gly Thr Glu His Ala Val Ile Arg Phe Lys Asn Asp Gln
275 280 285
Ala Asn Tyr Ser Leu Asn Thr Asp Asp Pro Leu Ile Phe Lys Ser Thr
290 295 300
Leu Asp Thr Asp Tyr Gln Met Thr Lys Arg Asp Met Gly Phe Thr Glu
305 310 315 320
Glu Glu Phe Lys Arg Leu Asn Ile Asn Ala Ala Lys Ser Ser Phe Leu
325 330 335
Pro Asp Asp Glu Lys Thr Glu Leu Leu Asp Leu Leu Tyr Lys Ala Tyr
340 345 350
Gly Met Pro Pro Thr Ser Ser Ala Glu His Arg Pro
355 360
<210> 16
<211> 1143
<212> DNA
<213> Sus scrofa
<400> 16
cgtggagatg gggagactgg ttagagggcg aaggtggtta gaagcacaga ggaagggccg 60
agaactggca tagagatcag aaataaagct cagtggtaat gaacctgact agtatccata 120
aagatgtggg tctgatccct ggcctgctca gtgggttaag gatctggtgt tgcggtgagc 180
tgcggtgtag gtcgcagaca cggcctggat ctggcattgc catgactgtg gtatatgctg 240
gcagctccat tttgacctct ggcctgggaa cttacatatg tcatgagtgt agtcctaaaa 300
acaaacaaaa aaattagagc caatgggact ctctatgctt ctagaatttt cttcagcaga 360
tgccaagagc tcgagactga gtaataagac tgggggccag acatgggttt gatctgccac 420
aggttgtgga cagctttgtt actcctggag ctcccaagag acttgggcag cattgtcccc 480
aacccctctt tccttctcag gggctcccgg aggccgtcaa aaggattgcc tacgagtttg 540
tggagatgaa agccaaggag ggcgtggtgt acgtggaggt gcgctacagc ccgcacctgc 600
tggccaactc caaggtggag ccgatcccct ggaaccaggc tgagtgagca accacccgga 660
gggctgtggc ggggtggccc aacccgcaac cgagcggcgg actctcagga gaccctgacc 720
caagagagac tttgatcttg ctccctgtgc tggtccacgg cctcagaaag atgggcttgg 780
ccgtcctaag ggacaggttc ccatccctca cctgggcttg cgtgttcacc ttgggtgaaa 840
gcgtttggct gcgtggccgt ccctcgtcct agatacaggg ctggagtcta ggagtgtgaa 900
cctggttatc cagtgactcc tagagggcct gtcctaaccc tgtaactgaa gtgggtctgg 960
cctattcctg ccctctctgc ccggacctca gggaggtcta agtggtacca cccgactacc 1020
ttgctccctt ctagccatga ctttgatgct tgtggacatg tgggaatctg acaccatagc 1080
agcgctctcc atcttggggc gggggatggg tttgtgtgcg acaacccccc caacacactg 1140
gga 1143
<210> 17
<211> 100
<212> RNA
<213> Artificial sequence
<400> 17
aaggauugcc uacgaguuug guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 18
<211> 100
<212> RNA
<213> Artificial sequence
<400> 18
uuggaguugg ccagcaggug guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 19
<211> 100
<212> RNA
<213> Artificial sequence
<400> 19
uuucaucucc acaaacucgu guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 20
<211> 100
<212> RNA
<213> Artificial sequence
<400> 20
ucagccuggu uccaggggau guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 21
<211> 100
<212> RNA
<213> Artificial sequence
<400> 21
ccugcuggcc aacuccaaag guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 22
<211> 100
<212> RNA
<213> Artificial sequence
<400> 22
ggagggcgug guguacgugg guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 23
<211> 100
<212> RNA
<213> Artificial sequence
<400> 23
caaggagggc gugguguacg guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 24
<211> 100
<212> RNA
<213> Artificial sequence
<400> 24
uguggagaug aaagccaagg guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100

Claims (10)

  1. Use of a sgrna combination or a plasmid combination in the preparation of a kit; the kit is used as follows (a) or (b): (a) preparing a recombinant cell; (b) preparing an immunodeficiency animal model;
    The sgRNA combination consists of the sgRNA IL2RG-g7 And sgRNA ADA-g7 Composition;
    the plasmid combination consists of a plasmid pKG-U6gRNA (IL 2RG-g 7) and a plasmid pKG-U6gRNA (ADA-g 7);
    the plasmid pKG-U6gRNA (IL 2RG-g 7) was obtained by introducing the sgRNA with the aid of the restriction enzyme BbsI IL2RG-g7 The target sequence binding region of (a) is inserted into a pKG-U6gRNA vector; the sgRNA IL2RG-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:12 from nucleotide 1 to nucleotide 20;
    the plasmid pKG-U6gRNA (ADA-g 7) was obtained by introducing the sgRNA with the aid of the restriction enzyme BbsI ADA-g7 The target sequence binding region of (a) is inserted into a pKG-U6gRNA vector; the sgRNA ADA-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:22 from nucleotide 1 to nucleotide 20;
    the pKG-U6gRNA vector is shown as SEQ ID NO: 3.
  2. 2. Use of the plasmid combination according to claim 1 and the plasmid pKG-GE3 for the co-preparation of a kit; the kit is used as follows (a) or (b): (a) preparing a recombinant cell; (b) preparing an immunodeficiency animal model;
    the plasmid pKG-GE3 is shown as SEQ ID NO: 2.
  3. Combination of sgrnas, consisting of sgrnas IL2RG-g7 And sgRNA ADA-g7 Composition;
    the sgRNA IL2RG-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:12 from nucleotide 1 to nucleotide 20;
    the sgRNA ADA-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:22 from nucleotide 1 to nucleotide 20.
  4. 4. Plasmid combination consisting of plasmid pKG-U6gRNA (IL 2RG-g 7) and plasmid pKG-U6gRNA (ADA-g 7);
    the plasmid pKG-U6gRNA (IL 2RG-g 7) was obtained by introducing the sgRNA with the aid of the restriction enzyme BbsI IL2RG-g7 The target sequence binding region of (a) is inserted into a pKG-U6gRNA vector; the sgRNA IL2RG-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:12 from nucleotide 1 to nucleotide 20;
    the plasmid pKG-U6gRNA (ADA-g 7) was obtained by introducing the sgRNA with the aid of the restriction enzyme BbsI ADA-g7 The target sequence binding region of (a) is inserted into a pKG-U6gRNA vector; the sgRNA ADA-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:22 from nucleotide 1 to nucleotide 20;
    the pKG-U6gRNA vector is shown as SEQ ID NO: 3.
  5. 5. A kit comprising the sgRNA combination of claim 3 or the plasmid combination of claim 4; the kit is used as follows (a) or (b): (a) preparing a recombinant cell; (b) preparing an immunodeficiency animal model.
  6. 6. The kit of claim 5, wherein: the kit also comprises a plasmid pKG-GE3; the plasmid pKG-GE3 is shown as SEQ ID NO: 2.
  7. 7. Use of the sgRNA combination of claim 3 or the plasmid combination of claim 4 or the kit of claim 5 or the kit of claim 6, said use being as follows (a) or (b): (a) preparing a recombinant cell; (b) preparing an immunodeficiency animal model.
  8. 8. A method of preparing a recombinant cell comprising the steps of: cotransfecting a pig cell with plasmid pKG-U6gRNA (IL 2RG-g 7), plasmid pKG-U6gRNA (ADA-g 7) and plasmid pKG-GE3 to obtain recombinant cells with mutated IL2RG genes and ADA genes;
    the plasmid pKG-U6gRNA (IL 2RG-g 7) was obtained by introducing the sgRNA with the aid of the restriction enzyme BbsI IL2RG-g7 The target sequence binding region of (a) is inserted into a pKG-U6gRNA vector; the sgRNA IL2RG-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:12 from nucleotide 1 to nucleotide 20;
    the plasmid pKG-U6gRNA (ADA-g 7) was obtained by introducing the sgRNA with the aid of the restriction enzyme BbsI ADA-g7 The target sequence binding region of (a) is inserted into a pKG-U6gRNA vector; the sgRNA ADA-g7 The target sequence binding region of (a) is as set forth in SEQ ID NO:22 from nucleotide 1 to nucleotide 20;
    the pKG-U6gRNA vector is shown as SEQ ID NO:3 is shown in the figure;
    the plasmid pKG-GE3 is shown as SEQ ID NO: 2.
  9. 9. The recombinant cell prepared by the method of claim 8.
  10. 10. Use of the recombinant cell of claim 9 in the preparation of an immunodeficient animal model.
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Citations (1)

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CN106350541A (en) * 2016-09-13 2017-01-25 苏州兰希亚生物科技有限公司 Construction method and application of congenital immunodeficiency gene therapy vector

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WO2009019528A1 (en) * 2007-08-03 2009-02-12 Cellectis Meganuclease variants cleaving a dna target sequence from the human interleukin-2 receptor gamma chain gene and uses thereof
JP2016528890A (en) * 2013-07-09 2016-09-23 プレジデント アンド フェローズ オブ ハーバード カレッジ Therapeutic use of genome editing using the CRISPR / Cas system

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Publication number Priority date Publication date Assignee Title
CN106350541A (en) * 2016-09-13 2017-01-25 苏州兰希亚生物科技有限公司 Construction method and application of congenital immunodeficiency gene therapy vector

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