CN111629831A - 用于离散解链分析的方法和组合物 - Google Patents

用于离散解链分析的方法和组合物 Download PDF

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CN111629831A
CN111629831A CN201980009454.6A CN201980009454A CN111629831A CN 111629831 A CN111629831 A CN 111629831A CN 201980009454 A CN201980009454 A CN 201980009454A CN 111629831 A CN111629831 A CN 111629831A
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nucleic acid
signal
target
probe
predetermined
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道格拉斯·惠特曼
珍妮弗·贝尔尼尔
威廉·旺
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Luminex Corp
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Luminex Corp
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
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    • C12Q2527/00Reactions demanding special reaction conditions
    • C12Q2527/107Temperature of melting, i.e. Tm
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    • C12Q2531/00Reactions of nucleic acids characterised by
    • C12Q2531/10Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
    • C12Q2531/113PCR

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  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CN201980009454.6A 2018-01-22 2019-01-22 用于离散解链分析的方法和组合物 Pending CN111629831A (zh)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201862620298P 2018-01-22 2018-01-22
US62/620,298 2018-01-22
PCT/US2019/014512 WO2019144107A1 (en) 2018-01-22 2019-01-22 Methods and compositions for discrete melt analysis

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CN111629831A true CN111629831A (zh) 2020-09-04

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US (2) US11390902B2 (https=)
EP (1) EP3743211A4 (https=)
JP (1) JP2021511056A (https=)
KR (1) KR20200115552A (https=)
CN (1) CN111629831A (https=)
AU (1) AU2019209444A1 (https=)
BR (1) BR112020014412A2 (https=)
CA (1) CA3088250A1 (https=)
WO (1) WO2019144107A1 (https=)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR20200115552A (ko) * 2018-01-22 2020-10-07 루미넥스 코포레이션 별개의 용융 분석을 위한 방법 및 조성물
US11039089B2 (en) * 2019-03-27 2021-06-15 Indian Institute Of Technology Ropar Thermal imaging for identifying a defect in a material
JP2023508843A (ja) * 2019-12-03 2023-03-06 バイオファイア・ダイアグノスティクス,リミテッド・ライアビリティ・カンパニー 正規化されたtm値を使用するアッセイにおいて分析物を同定するためのシステムおよび方法
EP4388132A1 (en) * 2021-08-19 2024-06-26 Luminex Corporation Digital amplification assay analysis method
EP4402643A1 (en) * 2021-09-14 2024-07-24 Combinati Incorporated Systems and methods for polymerase chain reaction quantification
WO2023108014A1 (en) * 2021-12-07 2023-06-15 Luminex Corporation Methods and compositions for nucleic acid analysis
KR102750761B1 (ko) * 2021-12-29 2025-01-09 주식회사 한국인삼공사 배암차즈기를 판별하기 위한 단일염기다형성을 갖는 유전자 마커
JP2025518761A (ja) * 2022-05-31 2025-06-19 シーメンス・ヘルスケア・ダイアグノスティックス・インコーポレーテッド 抗菌薬感受性を測定する方法及びキット
EP4709880A2 (en) * 2023-05-12 2026-03-18 Life Technologies Corporation Systems and methods for multiplexed polymerase chain reaction processes and data analysis
WO2025179142A1 (en) * 2024-02-22 2025-08-28 Cepheid Maximizing optical channel capabilities for target detection

Citations (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050053950A1 (en) * 2003-09-08 2005-03-10 Enrique Zudaire Ubani Protocol and software for multiplex real-time PCR quantification based on the different melting temperatures of amplicons
EP2228454A1 (en) * 2009-03-10 2010-09-15 Roche Diagnostics GmbH Multiplex quantitative nucleic acid amplification and melting assay
CN102112632A (zh) * 2008-08-08 2011-06-29 史密斯探测公司 用于pcr分析的检测算法
CN102428459A (zh) * 2009-05-15 2012-04-25 爱达荷科技公司 用于熔化曲线自动分析的系统和方法
US20130095479A1 (en) * 2004-10-18 2013-04-18 Brandeis University Primers, probes and methods for nucleic acid amplification
CN105765583A (zh) * 2013-08-30 2016-07-13 犹他大学研究基金会 去除dna解链分析中的荧光背景的量子方法
CN106715720A (zh) * 2014-08-11 2017-05-24 卢米耐克斯公司 用于在核酸测定中改善解链分辨和多重性的探针
CN107208145A (zh) * 2014-12-30 2017-09-26 端粒诊断公司 多重定量pcr
CN108368547A (zh) * 2015-12-15 2018-08-03 Seegene株式会社 与靶核酸序列有关的信号提取

Family Cites Families (22)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5200313A (en) * 1983-08-05 1993-04-06 Miles Inc. Nucleic acid hybridization assay employing detectable anti-hybrid antibodies
JP3963422B2 (ja) * 2000-08-03 2007-08-22 日鉄環境エンジニアリング株式会社 核酸の測定方法
US7058184B1 (en) 2003-03-25 2006-06-06 Robert Hickling Acoustic measurement method and apparatus
EP2140033B1 (en) * 2007-03-28 2012-10-10 Signal Diagnostics System and method for high resolution analysis of nucleic acids to detect sequence variations
EP2291539B1 (en) * 2008-06-25 2018-03-14 Okura, Michael Apparatus for melting curve analysis of nucleic acids in microarray format
US9156010B2 (en) 2008-09-23 2015-10-13 Bio-Rad Laboratories, Inc. Droplet-based assay system
US9417190B2 (en) 2008-09-23 2016-08-16 Bio-Rad Laboratories, Inc. Calibrations and controls for droplet-based assays
JP2012511328A (ja) 2008-12-10 2012-05-24 スミスズ ディテクション インコーポレイティド 温度依存ハイブリダイゼーションを使用した核酸配列の同定及び区別
GB201017978D0 (en) * 2010-10-25 2010-12-08 Oxitec Ltd Multiplex amplification and detection
WO2012075231A1 (en) * 2010-12-03 2012-06-07 Brandeis University Methods and kits for detecting nucleic acid mutants in wild-type populations
MX340258B (es) * 2011-01-11 2016-07-01 Seegene Inc Detección de secuencias de ácido nucleico objetivo mediante ensayo de escisión y extensión del pto.
WO2014028882A1 (en) 2012-08-17 2014-02-20 Bio-NEMS Corporation Nucleic acid classification
WO2015023616A2 (en) 2013-08-12 2015-02-19 The Johns Hopkins University Method for comprehensive, quantitative, and highly sensitive discrimination of nucleic acid sequences in homogeneous and heterogeneous populations
WO2015147370A1 (en) * 2014-03-28 2015-10-01 Seegene, Inc. Detection of target nucleic acid sequences using different detection temperatures
CA2970966A1 (en) * 2014-12-22 2016-06-30 Anapa Biotech A/S Dual quenching assay for multiplex detection of target nucleic acids
LT3298162T (lt) * 2015-05-18 2020-03-10 Saga Diagnostics Ab Tikslinės nukleorūgšties ir variantų aptikimas
EP3957398A1 (en) 2015-09-29 2022-02-23 Life Technologies Corporation Systems and methods for performing digital pcr
US11232851B2 (en) 2016-06-23 2022-01-25 Canon Information And Imaging Solutions, Inc. System and method for modeling and subtracting background signals from a melt curve
US11034997B2 (en) 2016-09-15 2021-06-15 Roche Molecular Systems, Inc. Methods for performing multiplexed real-time PCR
EP3299470B1 (en) 2016-09-23 2019-10-30 Roche Diagniostics GmbH A method for reducing quantification errors caused by reaction volume deviations in digital polymerase chain reaction
ES2909055T3 (es) 2016-11-17 2022-05-05 Combinati Incorporated Métodos y sistemas para el análisis y la cuantificación de ácidos nucleicos
KR20200115552A (ko) * 2018-01-22 2020-10-07 루미넥스 코포레이션 별개의 용융 분석을 위한 방법 및 조성물

Patent Citations (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050053950A1 (en) * 2003-09-08 2005-03-10 Enrique Zudaire Ubani Protocol and software for multiplex real-time PCR quantification based on the different melting temperatures of amplicons
US20130095479A1 (en) * 2004-10-18 2013-04-18 Brandeis University Primers, probes and methods for nucleic acid amplification
CN102112632A (zh) * 2008-08-08 2011-06-29 史密斯探测公司 用于pcr分析的检测算法
EP2228454A1 (en) * 2009-03-10 2010-09-15 Roche Diagnostics GmbH Multiplex quantitative nucleic acid amplification and melting assay
CN102428459A (zh) * 2009-05-15 2012-04-25 爱达荷科技公司 用于熔化曲线自动分析的系统和方法
CN105765583A (zh) * 2013-08-30 2016-07-13 犹他大学研究基金会 去除dna解链分析中的荧光背景的量子方法
CN106715720A (zh) * 2014-08-11 2017-05-24 卢米耐克斯公司 用于在核酸测定中改善解链分辨和多重性的探针
CN107208145A (zh) * 2014-12-30 2017-09-26 端粒诊断公司 多重定量pcr
CN108368547A (zh) * 2015-12-15 2018-08-03 Seegene株式会社 与靶核酸序列有关的信号提取

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BR112020014412A2 (pt) 2020-12-29
EP3743211A4 (en) 2021-11-24
AU2019209444A1 (en) 2020-07-30
WO2019144107A1 (en) 2019-07-25
JP2021511056A (ja) 2021-05-06
EP3743211A1 (en) 2020-12-02
US11390902B2 (en) 2022-07-19
US20190226008A1 (en) 2019-07-25
KR20200115552A (ko) 2020-10-07
CA3088250A1 (en) 2019-07-25
US20220364148A1 (en) 2022-11-17

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