CN109804087A - 使用猝灭剂的基于光学的纳米孔测序 - Google Patents
使用猝灭剂的基于光学的纳米孔测序 Download PDFInfo
- Publication number
- CN109804087A CN109804087A CN201780062870.3A CN201780062870A CN109804087A CN 109804087 A CN109804087 A CN 109804087A CN 201780062870 A CN201780062870 A CN 201780062870A CN 109804087 A CN109804087 A CN 109804087A
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- nano
- polynucleotides
- pore
- nucleotide
- fluorescent
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
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- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Physics & Mathematics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
- Investigating Or Analysing Biological Materials (AREA)
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201662377409P | 2016-08-19 | 2016-08-19 | |
US62/377,409 | 2016-08-19 | ||
PCT/US2017/043772 WO2018034807A1 (fr) | 2016-08-19 | 2017-07-25 | Séquençage par nanopores à base optique à l'aide d'agents d'extinction |
Publications (1)
Publication Number | Publication Date |
---|---|
CN109804087A true CN109804087A (zh) | 2019-05-24 |
Family
ID=61196974
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN201780062870.3A Pending CN109804087A (zh) | 2016-08-19 | 2017-07-25 | 使用猝灭剂的基于光学的纳米孔测序 |
Country Status (6)
Country | Link |
---|---|
EP (1) | EP3500684A4 (fr) |
JP (1) | JP2019528065A (fr) |
CN (1) | CN109804087A (fr) |
AU (1) | AU2017312746A1 (fr) |
CA (1) | CA3031812A1 (fr) |
WO (1) | WO2018034807A1 (fr) |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN114286867A (zh) * | 2019-08-20 | 2022-04-05 | 深圳华大智造极创科技有限公司 | 一种基于发光标记物光信号动力学及二次发光信号对多核苷酸进行测序的方法 |
Families Citing this family (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2018034807A1 (fr) * | 2016-08-19 | 2018-02-22 | Quantapore, Inc. | Séquençage par nanopores à base optique à l'aide d'agents d'extinction |
US20220364991A1 (en) * | 2021-03-24 | 2022-11-17 | Northeastern University | Method and System for Decoding Information Stored on a Polymer Sequence |
Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20050095599A1 (en) * | 2003-10-30 | 2005-05-05 | Pittaro Richard J. | Detection and identification of biopolymers using fluorescence quenching |
US20120270221A1 (en) * | 2006-05-12 | 2012-10-25 | Pronucleotein Biotechnologies, Llc | Methods of sequencing fluorophore-quencher FRET-aptamers |
US20130203050A1 (en) * | 2009-09-30 | 2013-08-08 | Quantapore, Inc. | Hybrid nanopore device with optical detection and methods of using same |
WO2016065339A1 (fr) * | 2014-10-24 | 2016-04-28 | Quantapore, Inc. | Analyse optique efficace de polymères au moyen de réseaux de nanostructures |
US20160122812A1 (en) * | 2014-10-10 | 2016-05-05 | Quantapore, Inc. | Nanopore-based polymer analysis with mutally-quenching fluorescent labels |
Family Cites Families (55)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4318846A (en) | 1979-09-07 | 1982-03-09 | Syva Company | Novel ether substituted fluorescein polyamino acid compounds as fluorescers and quenchers |
US4812409A (en) | 1986-01-31 | 1989-03-14 | Eastman Kodak Company | Hydrolyzable fluorescent substrates and analytical determinations using same |
US4810636A (en) | 1986-12-09 | 1989-03-07 | Miles Inc. | Chromogenic acridinone enzyme substrates |
US4774339A (en) | 1987-08-10 | 1988-09-27 | Molecular Probes, Inc. | Chemically reactive dipyrrometheneboron difluoride dyes |
US4945171A (en) | 1987-08-10 | 1990-07-31 | Molecular Probes, Inc. | Xanthene dyes having a fused (C) benzo ring |
US5002867A (en) | 1988-04-25 | 1991-03-26 | Macevicz Stephen C | Nucleic acid sequence determination by multiple mixed oligonucleotide probes |
US5433896A (en) | 1994-05-20 | 1995-07-18 | Molecular Probes, Inc. | Dibenzopyrrometheneboron difluoride dyes |
US5274113A (en) | 1991-11-01 | 1993-12-28 | Molecular Probes, Inc. | Long wavelength chemically reactive dipyrrometheneboron difluoride dyes and conjugates |
US5227487A (en) | 1990-04-16 | 1993-07-13 | Molecular Probes, Inc. | Certain tricyclic and pentacyclic-hetero nitrogen rhodol dyes |
US5248782A (en) | 1990-12-18 | 1993-09-28 | Molecular Probes, Inc. | Long wavelength heteroaryl-substituted dipyrrometheneboron difluoride dyes |
US5187288A (en) | 1991-05-22 | 1993-02-16 | Molecular Probes, Inc. | Ethenyl-substituted dipyrrometheneboron difluoride dyes and their synthesis |
US5405747A (en) | 1991-09-25 | 1995-04-11 | The Regents Of The University Of California Office Of Technology Transfer | Method for rapid base sequencing in DNA and RNA with two base labeling |
US5798042A (en) | 1994-03-07 | 1998-08-25 | Regents Of The University Of California | Microfabricated filter with specially constructed channel walls, and containment well and capsule constructed with such filters |
US5795782A (en) | 1995-03-17 | 1998-08-18 | President & Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
US6362002B1 (en) | 1995-03-17 | 2002-03-26 | President And Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
US6162931A (en) | 1996-04-12 | 2000-12-19 | Molecular Probes, Inc. | Fluorinated xanthene derivatives |
EP0910664A1 (fr) | 1996-04-15 | 1999-04-28 | University Of Southern California | Synthese d'adn marque par fluorophores |
US6005113A (en) | 1996-05-15 | 1999-12-21 | Molecular Probes, Inc. | Long wavelength dyes for infrared tracing |
US5830912A (en) | 1996-11-15 | 1998-11-03 | Molecular Probes, Inc. | Derivatives of 6,8-difluoro-7-hydroxycoumarin |
US5696157A (en) | 1996-11-15 | 1997-12-09 | Molecular Probes, Inc. | Sulfonated derivatives of 7-aminocoumarin |
US6130101A (en) | 1997-09-23 | 2000-10-10 | Molecular Probes, Inc. | Sulfonated xanthene derivatives |
US6080868A (en) * | 1998-01-23 | 2000-06-27 | The Perkin-Elmer Corporation | Nitro-substituted non-fluorescent asymmetric cyanine dye compounds |
US6287825B1 (en) | 1998-09-18 | 2001-09-11 | Molecular Staging Inc. | Methods for reducing the complexity of DNA sequences |
US6267872B1 (en) | 1998-11-06 | 2001-07-31 | The Regents Of The University Of California | Miniature support for thin films containing single channels or nanopores and methods for using same |
US6426231B1 (en) | 1998-11-18 | 2002-07-30 | The Texas A&M University System | Analyte sensing mediated by adapter/carrier molecules |
WO2000064988A1 (fr) | 1999-04-23 | 2000-11-02 | Molecular Probes, Inc. | Colorants a base de xanthene et leur utilisation en tant que composes d'extinction de luminescence |
US20040214221A1 (en) | 1999-05-07 | 2004-10-28 | Klaus Muehlegger | High density labeling of DNA with modified or "chromophore" carrying nucleotides and DNA polymerases used |
US6464842B1 (en) | 1999-06-22 | 2002-10-15 | President And Fellows Of Harvard College | Control of solid state dimensional features |
US6727356B1 (en) | 1999-12-08 | 2004-04-27 | Epoch Pharmaceuticals, Inc. | Fluorescent quenching detection reagents and methods |
EP2261240B1 (fr) | 2000-02-11 | 2015-09-02 | The Texas A & M University System | Compositions à biocapteur et procédés d'utilisation |
US7001792B2 (en) | 2000-04-24 | 2006-02-21 | Eagle Research & Development, Llc | Ultra-fast nucleic acid sequencing device and a method for making and using the same |
US7019129B1 (en) | 2000-05-09 | 2006-03-28 | Biosearch Technologies, Inc. | Dark quenchers for donor-acceptor energy transfer |
US6323337B1 (en) * | 2000-05-12 | 2001-11-27 | Molecular Probes, Inc. | Quenching oligonucleotides |
US7744816B2 (en) | 2002-05-01 | 2010-06-29 | Intel Corporation | Methods and device for biomolecule characterization |
AU2003245272A1 (en) | 2002-05-10 | 2003-11-11 | The Texas A And M University System | Stochastic sensing through covalent interactions |
US7803536B2 (en) | 2002-09-20 | 2010-09-28 | Integrated Dna Technologies, Inc. | Methods of detecting fluorescence with anthraquinone quencher dyes |
US7575865B2 (en) | 2003-01-29 | 2009-08-18 | 454 Life Sciences Corporation | Methods of amplifying and sequencing nucleic acids |
US20070042366A1 (en) | 2003-02-28 | 2007-02-22 | Brown University | Nanopores, methods for using same, methods for making same and methods for characterizing biomolecules using same |
EP1784754A4 (fr) | 2004-08-13 | 2009-05-27 | Harvard College | Plateforme de lecture d'adn opti-nanopore a rendement ultra eleve |
US7397232B2 (en) | 2005-10-21 | 2008-07-08 | The University Of Akron | Coulter counter having a plurality of channels |
US8883689B2 (en) | 2005-12-06 | 2014-11-11 | Bayer Cropscience Lp | Stabilized herbicidal compositions |
US8003319B2 (en) | 2007-02-02 | 2011-08-23 | International Business Machines Corporation | Systems and methods for controlling position of charged polymer inside nanopore |
WO2009020682A2 (fr) | 2007-05-08 | 2009-02-12 | The Trustees Of Boston University | Fonctionnalisation chimique d'ensembles de nanopores et de nanopores à semi-conducteurs, et leurs applications |
GB0713143D0 (en) | 2007-07-06 | 2007-08-15 | Ucl Business Plc | Nucleic acid detection method |
JP2009044967A (ja) * | 2007-08-14 | 2009-03-05 | Sony Corp | 二本鎖核酸の形成に係る情報を得る方法 |
CN102099668B (zh) | 2008-07-17 | 2013-05-01 | 皇家飞利浦电子股份有限公司 | 纳米孔装置和用于核酸分析的方法 |
HUE029215T2 (en) | 2008-09-22 | 2017-02-28 | Univ Washington | MSP nanopores and related procedures |
CA2750879C (fr) | 2009-01-30 | 2018-05-22 | Oxford Nanopore Technologies Limited | Adaptateurs pour des constructions d'acide nucleique dans le sequencage de sequences transmembranaires |
CA2756233A1 (fr) | 2009-03-26 | 2010-09-30 | Trustees Of Boston University | Procede d'imagerie sur une interface mince a l'etat solide entre deux fluides |
CN102741430B (zh) | 2009-12-01 | 2016-07-13 | 牛津楠路珀尔科技有限公司 | 生化分析仪器、用于进行生化分析的第一模块以及相关方法 |
BR112014001699A2 (pt) | 2011-07-25 | 2017-06-13 | Oxford Nanopore Tech Ltd | método para sequenciar de um polinucleotídeo alvo de filamento duplo, kit, métodos para preparar um polinucleotídeo alvo de filamento duplo para sequenciamento e para sequenciar um polinucleotídeo alvo de filamento duplo, e, aparelho |
US9862997B2 (en) | 2013-05-24 | 2018-01-09 | Quantapore, Inc. | Nanopore-based nucleic acid analysis with mixed FRET detection |
CN104253263A (zh) | 2013-06-28 | 2014-12-31 | 富泰华工业(深圳)有限公司 | 三级性电池 |
CN109415765A (zh) * | 2016-04-14 | 2019-03-01 | 昆塔波尔公司 | 用纳米孔的聚合物分析中的混合光学信号 |
WO2018034807A1 (fr) * | 2016-08-19 | 2018-02-22 | Quantapore, Inc. | Séquençage par nanopores à base optique à l'aide d'agents d'extinction |
-
2017
- 2017-07-25 WO PCT/US2017/043772 patent/WO2018034807A1/fr unknown
- 2017-07-25 JP JP2019509522A patent/JP2019528065A/ja active Pending
- 2017-07-25 EP EP17841831.5A patent/EP3500684A4/fr not_active Withdrawn
- 2017-07-25 CA CA3031812A patent/CA3031812A1/fr not_active Abandoned
- 2017-07-25 CN CN201780062870.3A patent/CN109804087A/zh active Pending
- 2017-07-25 AU AU2017312746A patent/AU2017312746A1/en not_active Abandoned
Patent Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20050095599A1 (en) * | 2003-10-30 | 2005-05-05 | Pittaro Richard J. | Detection and identification of biopolymers using fluorescence quenching |
US20120270221A1 (en) * | 2006-05-12 | 2012-10-25 | Pronucleotein Biotechnologies, Llc | Methods of sequencing fluorophore-quencher FRET-aptamers |
US20130203050A1 (en) * | 2009-09-30 | 2013-08-08 | Quantapore, Inc. | Hybrid nanopore device with optical detection and methods of using same |
US20160122812A1 (en) * | 2014-10-10 | 2016-05-05 | Quantapore, Inc. | Nanopore-based polymer analysis with mutally-quenching fluorescent labels |
WO2016065339A1 (fr) * | 2014-10-24 | 2016-04-28 | Quantapore, Inc. | Analyse optique efficace de polymères au moyen de réseaux de nanostructures |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN114286867A (zh) * | 2019-08-20 | 2022-04-05 | 深圳华大智造极创科技有限公司 | 一种基于发光标记物光信号动力学及二次发光信号对多核苷酸进行测序的方法 |
CN114286867B (zh) * | 2019-08-20 | 2024-04-16 | 青岛华大智造科技有限责任公司 | 一种基于发光标记物光信号动力学及二次发光信号对多核苷酸进行测序的方法 |
Also Published As
Publication number | Publication date |
---|---|
WO2018034807A1 (fr) | 2018-02-22 |
AU2017312746A1 (en) | 2019-01-31 |
EP3500684A4 (fr) | 2020-02-26 |
CA3031812A1 (fr) | 2018-02-22 |
JP2019528065A (ja) | 2019-10-10 |
EP3500684A1 (fr) | 2019-06-26 |
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Application publication date: 20190524 |
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