CN105543363A - 一种Cry3Bb1实时荧光PCR检测方法及其试剂盒 - Google Patents
一种Cry3Bb1实时荧光PCR检测方法及其试剂盒 Download PDFInfo
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Abstract
本发明“一种Cry3Bb1实时荧光PCR检测方法及其试剂盒”涉及转基因检测领域。通过设计针对Cry3Bb1基因特异序列的特异引物,应用实时荧光PCR扩增技术,实现了Cry3Bb1基因的快速检测。该方法特异性强,灵敏度高和稳定性好,对于提高Cry3Bb1基因检测的准确性、缩短检测时间具有重要的作用。
Description
技术领域
本发明涉及转基因植物极其产品检测领域,提供了一种利用实时荧光PCR扩增技术快速检测抗虫基因Cry3Bb1的方法及其试剂盒,适用于口岸检验检疫实验室应用。
背景技术
Cry3Bb1基因编码表达一种从苏云金芽孢杆菌中来的抗鞘翅类昆虫的蛋白质,目前该基因已被美国孟山都公司用于转基因抗虫玉米培育研发中,并将MON863和MON88017两个含有Cry3Bb1基因的转基因玉米品系投入市场,来控制玉米根蠕虫危害。欧盟和我国也先后批准了这两个转基因玉米品系进口,我国目前进口转基因玉米用于饲料等加工工业,未批准其用于人类食品,也不允许国内商业化种植。
目前在我国转基因生物安全检测标准中尚无实时荧光PCR检测方法。由于我国玉米及其制品进口量逐年上升,检测精度、速度要求越来越高,传统的定性PCR检测方法已不能满足商品快速通关的需要。
本研究通过巧妙地设计针对外源基因Cry3Bb1特异引物序列及Taqman探针,应用实时荧光PCR扩增技术,实现了Cry3Bb1的高效快速检测。该方法特异性强,灵敏度高和稳定性好,对于提高Cry3Bb1检测的准确性、缩短检测时间具有重要的作用,适合口岸检验检疫部门运用和推广。
发明内容
本发明需要解决的技术问题是提供用于检测Cry3Bb1的特异性引物及Taqman探针。
本发明需要解决的另一问题是提供包含上述引物和Taqman探针的PCR检测试剂盒。
本发明用于检测Cry3Bb1的PCR引物及Taqman探针序列为:
上游引物Cry3Bb1-F:5’—GAGCTCCAGACCAACCACAAC—3’
下游引物Cry3Bb1-R:5’—AACTCCTTGTAGTTCAGCTCTTCCA—3’
Taqman探针Cry3Bb1-P:5’FAM—AGTACCCGCTGGCCGACAACCC—BHQ13’
本发明的Cry3Bb1检测试剂盒,包括以下成分:
(1)Cry3Bb1DNA模板和阴性对照DNA模板
(2)Cry3Bb1上下游引物及Taqman探针:
Cry3Bb1-F:5’—GAGCTCCAGACCAACCACAAC—3’
Cry3Bb1-R:5’—AACTCCTTGTAGTTCAGCTCTTCCA—3’
Cry3Bb1-P:5’FAM—AGTACCCGCTGGCCGACAACCC—BHQ13’
(3)10×ExTaqPCRBuffer,DDH2O,2.5mMdNTP,5U/μlExTaqHS酶
(4)判定结果:Ct值小于35,说明样品中含有Cry3Bb1;Ct值大于等于40,则认为样品中不含Cry3Bb1成分;Ct值介于35和40之间,需要对样品进行复验,复验Ct值小于40,则认为样品含有Cry3Bb1。
与现有技术相比,本发明的进步在于:检测速度快,节省时间,特异性强,灵敏度高,稳定性好,适合口岸检验检疫实验室快速鉴定Cry3Bb1。
附图说明
图1为Cry3Bb1试剂盒特异性测试结果,1-8号样品为8个转基因玉米品系,分别为MON89034、Bt11、Bt176、TC1507、MIR604、MON88017、MIR162和MON863,9号样品为非转基因玉米。从图1可以看出,含有Cry3Bb1的6号和8号样品有明显的扩增曲线产生,其他对照样品均无荧光信号,用本试剂盒能准确地检测出Cry3Bb1。
具体实施方式
实时荧光PCR引物、探针设计:
根据Cry3Bb1序列,利用PrimerPremier5.0引物设计软件,设计一组引物及TaqMan探针,引物探针位置如上所示,引物及TaqMan探针由Invitrogen(上海英俊生物技术有限公司)公司合成:
上游引物Cry3Bb1-F:5’—GAGCTCCAGACCAACCACAAC—3’
下游引物Cry3Bb1-R:5’—AACTCCTTGTAGTTCAGCTCTTCCA—3’
Taqman探针Cry3Bb1-P:5’FAM—AGTACCCGCTGGCCGACAACCC—BHQ13’
标本来源
本实验测试了9个玉米样品,其中包括8个转基因玉米品系样品,1个非转基因玉米样品,见下表:
实施例1、Cry3Bb1的检测
提取:按照Promega组织基因组DNA提取试剂盒说明书进行操作,提取9份样品玉米基因组DNA溶于100uLTE中,-20℃保存备用。
扩增:以无菌水作为空白对照,分别以MON89034、Bt11、Bt176、TC1507、MIR604、MON88017、MIR162、MON863和非转基因玉米基因组DNA作为模板,进行实时荧光PCR扩增。
25μlPCR反应体系:
10×ExTaqBuffer2.5μl
2.5mmol/LdNTP2μl
20μmol/LCry3Bb1-F0.5μl
20μmol/LCry3Bb1-R0.5μl
20μmol/LCry3Bb1-P0.5μl
模板DNA2μl
5U/μLTaq酶0.125μl
ddH2O16.875μl
PCR反应条件:95℃预变性2min,95℃变性10s,60℃退火30s,40个反应循环,4℃降温。
结果:
从图1结果可以看出,6号和8号样品为Cry3Bb1,荧光信号积累出现典型扩增曲线,其他各种转基因玉米和9号非转基因玉米都没有荧光信号积累升高。结果表明,本发明中的Cry3Bb1特异引物只能从样品中扩增出Cry3Bb1基因,其他样品及阴性对照都没有出现扩增产物,显示了该引物良好的特异性。
序列表
SEQUENCELISTING
<110>天津出入境检验检疫局动植物与食品检测中心
<120>一种Cry3Bb1实时荧光PCR检测方法及其试剂盒
<141>2016-1-6
<160>3
<210>1
<211>21
<212>DNA
<213>人工序列
<400>1
gagctccagaccaaccacaac21
<210>2
<211>25
<212>DNA
<213>人工序列
<400>2
aactccttgtagttcagctcttcca25
<210>3
<211>22
<212>DNA
<213>人工序列
<400>3
agtacccgctggccgacaaccc22
Claims (3)
1.一种用于Cry3Bb1检测的特异性引物、探针,其特征在于,序列为:
Cry3Bb1-F:5’—GAGCTCCAGACCAACCACAAC—3’
Cry3Bb1-R:5’—AACTCCTTGTAGTTCAGCTCTTCCA—3’
Cry3Bb1-P:5’FAM—AGTACCCGCTGGCCGACAACCC—BHQ13’。
2.一种用于检测Cry3Bb1的试剂盒,其特征在于,包括如下成分:
(1)阳性对照DNA模板和阴性对照玉米DNA模板
(2)Cry3Bb1上下游引物
Cry3Bb1-F:5’—GAGCTCCAGACCAACCACAAC—3’
Cry3Bb1-R:5’—AACTCCTTGTAGTTCAGCTCTTCCA—3’
(3)Cry3Bb1TaqMan探针
Cry3Bb1-P:5’FAM—AGTACCCGCTGGCCGACAACCC—BHQ13’
(4)10×ExTaqPCRBuffer,ddH2O,2.5mMdNTP,5U/μlTaq酶。
3.一种Cry3Bb1的快速检测方法,包括如下步骤:
(1)25μlPCR反应体系:
10×ExTaqBuffer2.5μl
2.5mmol/LdNTP2μl
20μmol/LCry3Bb1-F0.5μl
20μmol/LCry3Bb1-R0.5μl
20μmol/LCry3Bb1-P0.5μl
模板DNA2μl
5U/μLTaq酶0.125μl
ddH2O16.875μl
(2)PCR反应条件:95℃预变性2min,95℃变性10s,60℃退火30s,40个反应循环,4℃降温
(3)判定结果:Ct值小于35,说明样品中含有Cry3Bb1;Ct值大于等于40,则认为样品中不含Cry3Bb1成分;Ct值介于35和40之间,需要对样品进行复验,复验Ct值小于40,则认为样品含有Cry3Bb1。
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Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
KR20060101658A (ko) * | 2005-03-21 | 2006-09-26 | 대한민국(국립농산물품질관리원장) | 유전자 변형체의 검정을 위한 프라이머 세트,검정방법 및이에 사용되는 표준 플라스미드 |
EP1950311A1 (en) * | 2007-01-29 | 2008-07-30 | Scientific Institute of Public Health (IPH) | Transgenic plant event detection |
CN104212880A (zh) * | 2013-07-24 | 2014-12-17 | 北京福德安科技有限公司 | 基于lamp的转基因玉米mon863基因快检试剂盒及检测方法 |
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Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
KR20060101658A (ko) * | 2005-03-21 | 2006-09-26 | 대한민국(국립농산물품질관리원장) | 유전자 변형체의 검정을 위한 프라이머 세트,검정방법 및이에 사용되는 표준 플라스미드 |
EP1950311A1 (en) * | 2007-01-29 | 2008-07-30 | Scientific Institute of Public Health (IPH) | Transgenic plant event detection |
CN104212880A (zh) * | 2013-07-24 | 2014-12-17 | 北京福德安科技有限公司 | 基于lamp的转基因玉米mon863基因快检试剂盒及检测方法 |
Non-Patent Citations (3)
Title |
---|
INGRID SCHOLTENS等: "Practical Experiences with an Extended Screening Strategy for Genetically Modified Organisms (GMOs) in Real-Life Samples", <JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY> * |
YANG L等: "Event Specific Qualitative and Quantitative Polymerase Chain Reaction Detection of Genetically Modified MON863 Maize Based on the 5¢-Transgene Integration Sequence", 《J AGRIC FOOD CHEM》 * |
王鸣等: "《甲型流感》", 31 March 2010, 中国中医药出版社 * |
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