CA2808485C - Methods and means for characterizing antibiotic resistance in microorganisms - Google Patents

Methods and means for characterizing antibiotic resistance in microorganisms Download PDF

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Publication number
CA2808485C
CA2808485C CA2808485A CA2808485A CA2808485C CA 2808485 C CA2808485 C CA 2808485C CA 2808485 A CA2808485 A CA 2808485A CA 2808485 A CA2808485 A CA 2808485A CA 2808485 C CA2808485 C CA 2808485C
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beta
microorganism
sample
mass
lactam antibiotic
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French (fr)
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CA2808485A1 (en
Inventor
Theo Marten Luider
Jeroen Jacob Alexander Van Kampen
Alexander Franciscus Van Belkum
Wilhelmus Hubertus Francisus Goessens
Gero Peter Hooff
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Erasmus University Medical Center
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Erasmus University Medical Center
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/34Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving hydrolase
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • C12Q1/04Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • C12Q1/04Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
    • C12Q1/10Enterobacteria
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • C12Q1/18Testing for antimicrobial activity of a material
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6872Methods for sequencing involving mass spectrometry
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6848Methods of protein analysis involving mass spectrometry
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/195Assays involving biological materials from specific organisms or of a specific nature from bacteria
    • G01N2333/24Assays involving biological materials from specific organisms or of a specific nature from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
    • G01N2333/245Escherichia (G)
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/90Enzymes; Proenzymes
    • G01N2333/914Hydrolases (3)
    • G01N2333/978Hydrolases (3) acting on carbon to nitrogen bonds other than peptide bonds (3.5)
    • G01N2333/986Hydrolases (3) acting on carbon to nitrogen bonds other than peptide bonds (3.5) acting on amide bonds in cyclic amides (3.5.2), e.g. beta-lactamase (penicillinase, 3.5.2.6), creatinine amidohydrolase (creatininase, EC 3.5.2.10), N-methylhydantoinase (3.5.2.6)
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2560/00Chemical aspects of mass spectrometric analysis of biological material

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Molecular Biology (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Immunology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Toxicology (AREA)
  • Biomedical Technology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Cell Biology (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CA2808485A 2010-08-19 2010-08-19 Methods and means for characterizing antibiotic resistance in microorganisms Active CA2808485C (en)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/NL2010/050523 WO2012023845A1 (en) 2010-08-19 2010-08-19 Methods and means for characterizing antibiotic resistance in microorganisms

Publications (2)

Publication Number Publication Date
CA2808485A1 CA2808485A1 (en) 2012-02-23
CA2808485C true CA2808485C (en) 2019-02-26

Family

ID=43530571

Family Applications (1)

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CA2808485A Active CA2808485C (en) 2010-08-19 2010-08-19 Methods and means for characterizing antibiotic resistance in microorganisms

Country Status (14)

Country Link
US (3) US9012174B2 (hu)
EP (3) EP3023503B1 (hu)
JP (1) JP6042332B2 (hu)
CN (2) CN107881210A (hu)
AU (1) AU2010359382B2 (hu)
BR (1) BR112013003763B1 (hu)
CA (1) CA2808485C (hu)
DK (1) DK2606145T3 (hu)
ES (2) ES2950280T3 (hu)
HR (1) HRP20231085T1 (hu)
HU (1) HUE062700T2 (hu)
PL (1) PL2606145T3 (hu)
PT (1) PT2606145T (hu)
WO (1) WO2012023845A1 (hu)

Families Citing this family (23)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2207893B1 (en) 2007-10-19 2011-12-28 Becton, Dickinson and Company Methods for the detection of beta-lactamases
WO2010047778A1 (en) 2008-10-20 2010-04-29 Becton Dickinson And Company Compositions for the detection of intracellular bacterial targets and other intracellular microorganism targets
ES2950280T3 (es) * 2010-08-19 2023-10-06 Univ Erasmus Med Ct Rotterdam Métodos para determinar la resistencia a los antibióticos en microorganismos
DE102011012060A1 (de) * 2011-02-23 2012-08-23 Bruker Daltonik Gmbh Massenspektrometrische Bestimmung der inhibitorischen Wirkung von Substanzen gegenüber beta-Lactamasen
JP6018808B2 (ja) * 2012-06-12 2016-11-02 株式会社日立ハイテクノロジーズ 微生物検査方法および検査システム
EP2981830B1 (en) * 2013-04-04 2019-04-03 Erasmus University Medical Center Rotterdam Mass spectrometric determination of drug resistance
ES2545873T3 (es) * 2013-05-23 2015-09-16 Bruker Daltonik Gmbh Determinación de resistencia con espectrometría de masas mediante la medición de la proliferación microbiana
WO2015078884A1 (en) * 2013-11-26 2015-06-04 Alleati Ag Method and microfluidic assembly for antibiotic susceptibility testing
CN103645273B (zh) * 2013-12-12 2015-12-30 宁波诺威医疗器械有限公司 β-内酰胺类抗生素耐药性的检测方法、系统及其应用
DE102014000646B4 (de) * 2014-01-17 2023-05-11 Bruker Daltonics GmbH & Co. KG Massenspektrometrische Resistenzbestimmung durch Metabolismus-Messung
FR3024465B1 (fr) * 2014-07-30 2018-03-23 Biomerieux Caracterisation de micro-organismes par maldi-tof
EP3081652B1 (de) 2015-04-13 2017-06-28 Bruker Daltonik GmbH Massenspektrometrischer schnelltest von resistenzen
CN116243006A (zh) * 2016-11-30 2023-06-09 布鲁克·道尔顿有限及两合公司 制备活的微生物样品和微生物用于随后的质谱测量和评估
US11191773B2 (en) * 2017-07-17 2021-12-07 President And Fellows Of Harvard College Methods of treatment for bacterial infections
KR20200051699A (ko) * 2017-09-07 2020-05-13 아뎁트릭스 코퍼레이션 프로테오믹스를 위한 멀티플렉스화된 비드 어레이
KR20190054921A (ko) * 2017-11-14 2019-05-22 주식회사 노스퀘스트 항생제 변형을 유도하는 내성균에 대한 질량분석법 검사 장치 및 방법
JP2019143975A (ja) 2018-02-15 2019-08-29 株式会社島津製作所 分析方法およびβ−ラクタム系抗菌薬耐性評価方法
WO2019178119A1 (en) 2018-03-12 2019-09-19 President And Fellows Of Harvard College Aminocoumarin compounds and methods of their use
KR101999574B1 (ko) * 2018-08-03 2019-09-27 다이아텍코리아 주식회사 질량분석법을 이용한 베타락탐 항생제 가수분해 효소의 활성형 직접 검출법
US20220296594A1 (en) * 2019-05-08 2022-09-22 Massachusetts Institute Of Technology Potentiators of antimicrobial and/or antiviral agents
KR20210015450A (ko) * 2019-08-02 2021-02-10 (재)씨젠의료재단 베타-락탐 항생제에 대한 내성을 가지는 병원성 균주의 직접 검출 방법
FR3119459A1 (fr) 2021-02-04 2022-08-05 bioMérieux Plaque pour une analyse par spectrometrie de masse utilisant une technique d’ionisation maldi
TWI774454B (zh) * 2021-06-29 2022-08-11 中國醫藥大學 抗藥性微生物預測方法

Family Cites Families (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5641623A (en) 1995-01-04 1997-06-24 Martin; Mark T. Electrochemiluminescence assay
US7291480B2 (en) 2002-03-13 2007-11-06 Black Jennifer A Device and method for detecting antibiotic-inactivating enzymes
DE102006021493B4 (de) * 2006-05-09 2010-04-01 Bruker Daltonik Gmbh Massenspektrometrische Messung mikrobieller Resistenzen
US20110245105A1 (en) 2008-12-08 2011-10-06 Yissum Research Development Company Of The Hebrew University Of Jerusalem Methods and Kits for Direct Detection and Susceptibility Profiling of Beta-Lactam Resistant Bacteria
DE102009032649B4 (de) 2009-07-10 2017-12-21 Bruker Daltonik Gmbh Massenspektrometrische Identifizierung von Mikroben nach Unterarten
DE102009033368B4 (de) 2009-07-16 2023-01-26 Bruker Daltonics GmbH & Co. KG Massenspektrometrische Sepsisdiagnose
CN101993910B (zh) * 2009-08-11 2013-01-02 湘北威尔曼制药股份有限公司 一种β-内酰胺酶的检测方法及检测试纸
DE102010023452B4 (de) 2010-06-11 2012-11-08 Bruker Daltonik Gmbh Massenspektrometrische Messung von β-Lactamase-Resistenzen
ES2950280T3 (es) * 2010-08-19 2023-10-06 Univ Erasmus Med Ct Rotterdam Métodos para determinar la resistencia a los antibióticos en microorganismos
CN102033102A (zh) 2010-10-13 2011-04-27 中国科学院上海有机化学研究所 高通量基质辅助激光解析-质谱法筛查奶类制品中β-内酰胺酶类解抗剂

Also Published As

Publication number Publication date
EP3023503A1 (en) 2016-05-25
EP3023503B1 (en) 2017-04-05
WO2012023845A1 (en) 2012-02-23
US9663817B2 (en) 2017-05-30
HUE062700T2 (hu) 2023-11-28
US20150184217A1 (en) 2015-07-02
US9334519B2 (en) 2016-05-10
CN103108958B (zh) 2017-12-08
ES2622127T3 (es) 2017-07-05
EP2606145A1 (en) 2013-06-26
CN107881210A (zh) 2018-04-06
PT2606145T (pt) 2023-07-11
ES2950280T3 (es) 2023-10-06
US9012174B2 (en) 2015-04-21
CN103108958A (zh) 2013-05-15
EP2606145B1 (en) 2023-06-14
AU2010359382B2 (en) 2015-05-07
AU2010359382A1 (en) 2013-02-28
PL2606145T3 (pl) 2024-03-11
EP3981883A1 (en) 2022-04-13
JP6042332B2 (ja) 2016-12-14
CA2808485A1 (en) 2012-02-23
JP2013535974A (ja) 2013-09-19
BR112013003763A2 (pt) 2016-05-31
HRP20231085T1 (hr) 2023-12-22
BR112013003763B1 (pt) 2019-10-22
US20130244230A1 (en) 2013-09-19
US20160230207A1 (en) 2016-08-11
DK2606145T3 (da) 2023-09-04

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