CA2331335A1 - Rearrangement de genes modifies par codon - Google Patents

Rearrangement de genes modifies par codon Download PDF

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Publication number
CA2331335A1
CA2331335A1 CA002331335A CA2331335A CA2331335A1 CA 2331335 A1 CA2331335 A1 CA 2331335A1 CA 002331335 A CA002331335 A CA 002331335A CA 2331335 A CA2331335 A CA 2331335A CA 2331335 A1 CA2331335 A1 CA 2331335A1
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CA
Canada
Prior art keywords
nucleic acid
codon
nucleic acids
library
codon altered
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA002331335A
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English (en)
Inventor
Phillip A. Patten
Lu Liu
Willem P. C. Stemmer
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Maxygen Inc
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Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Individual filed Critical Individual
Publication of CA2331335A1 publication Critical patent/CA2331335A1/fr
Abandoned legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/102Mutagenizing nucleic acids
    • C12N15/1027Mutagenizing nucleic acids by DNA shuffling, e.g. RSR, STEP, RPR
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/005Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/475Growth factors; Growth regulators
    • C07K14/505Erythropoietin [EPO]
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/52Cytokines; Lymphokines; Interferons
    • C07K14/53Colony-stimulating factor [CSF]
    • C07K14/535Granulocyte CSF; Granulocyte-macrophage CSF
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/0068Means for controlling the apparatus of the process
    • B01J2219/00686Automatic
    • B01J2219/00689Automatic using computers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2740/00Reverse transcribing RNA viruses
    • C12N2740/00011Details
    • C12N2740/10011Retroviridae
    • C12N2740/16011Human Immunodeficiency Virus, HIV
    • C12N2740/16111Human Immunodeficiency Virus, HIV concerning HIV env
    • C12N2740/16122New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes

Abstract

La présente invention concerne des techniques de recombinaison de banques, modifiées par codon, d'acides nucléiques. En plus des modifications par codon, ces acides nucléiques peuvent inclure des modifications conservatrices ou non conservatrices des séquences de codage, par opposition à des séquences de type sauvage. L'invention concerne l'obtention, outre de nouvelles protéines, de vecteurs caractérisés par des taux réduits de retransformation en virus de type sauvage et atténué.
CA002331335A 1998-09-29 1999-09-28 Rearrangement de genes modifies par codon Abandoned CA2331335A1 (fr)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US10236298P 1998-09-29 1998-09-29
US60/102,362 1998-09-29
US11772999P 1999-01-29 1999-01-29
US60/117,729 1999-01-29
US11881399P 1999-02-05 1999-02-05
US60/118,813 1999-02-05
US14104999P 1999-06-24 1999-06-24
US60/141,049 1999-06-24
PCT/US1999/022588 WO2000018906A2 (fr) 1998-09-29 1999-09-28 Rearrangement de genes modifies par codon

Publications (1)

Publication Number Publication Date
CA2331335A1 true CA2331335A1 (fr) 2000-04-06

Family

ID=27493256

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002331335A Abandoned CA2331335A1 (fr) 1998-09-29 1999-09-28 Rearrangement de genes modifies par codon

Country Status (7)

Country Link
EP (1) EP1117777A2 (fr)
JP (1) JP2002537758A (fr)
KR (1) KR20010085850A (fr)
AU (1) AU1199000A (fr)
CA (1) CA2331335A1 (fr)
IL (1) IL140441A0 (fr)
WO (1) WO2000018906A2 (fr)

Families Citing this family (74)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6759226B1 (en) 2000-05-24 2004-07-06 Third Wave Technologies, Inc. Enzymes for the detection of specific nucleic acid sequences
US7150982B2 (en) 1991-09-09 2006-12-19 Third Wave Technologies, Inc. RNA detection assays
US7045289B2 (en) 1991-09-09 2006-05-16 Third Wave Technologies, Inc. Detection of RNA Sequences
US5605793A (en) 1994-02-17 1997-02-25 Affymax Technologies N.V. Methods for in vitro recombination
WO1999020652A1 (fr) * 1997-10-23 1999-04-29 Nippon Institute For Biological Science Facteur stimulant les colonies de granulocytes de felins
AU1124499A (en) 1997-10-28 1999-05-17 Maxygen, Inc. Human papillomavirus vectors
WO1999023107A1 (fr) 1997-10-31 1999-05-14 Maxygen, Incorporated Modification du tropisme viral et de la diversite d'especes hote par recombinaison du genome viral
US6902918B1 (en) 1998-05-21 2005-06-07 California Institute Of Technology Oxygenase enzymes and screening method
CA2335269A1 (fr) 1998-06-17 1999-12-23 Maxygen, Inc. Technique de production de polynucleotides aux caracteristiques souhaitees
US7033781B1 (en) 1999-09-29 2006-04-25 Diversa Corporation Whole cell engineering by mutagenizing a substantial portion of a starting genome, combining mutations, and optionally repeating
IL150291A0 (en) * 2000-01-11 2002-12-01 Maxygen Inc Integrated systems and methods for diversity generation and screening
AU2001241522A1 (en) * 2000-02-16 2001-08-27 Sequel Genetics, Inc. Methods and products for peptide based dna sequence identification and analysis
WO2001068835A2 (fr) * 2000-03-13 2001-09-20 Aptagen Technique de modification d'un acide nucleique
US7115403B1 (en) 2000-05-16 2006-10-03 The California Institute Of Technology Directed evolution of galactose oxidase enzymes
AU2001263411A1 (en) * 2000-05-23 2001-12-03 California Institute Of Technology Gene recombination and hybrid protein development
AUPQ776100A0 (en) 2000-05-26 2000-06-15 Australian National University, The Synthetic molecules and uses therefor
EP1294869A2 (fr) * 2000-06-14 2003-03-26 Diversa Corporation Ingenierie cellulaire complete par mutagenese d'une partie substantielle d'un genome de depart, par combinaison de mutations et eventuellement repetition
EP1304376A4 (fr) * 2000-07-25 2004-12-29 Takeda Chemical Industries Ltd Procede de production d'une proteine de recombinaison
AU2001280968A1 (en) 2000-07-31 2002-02-13 Menzel, Rolf Compositions and methods for directed gene assembly
WO2002057495A2 (fr) * 2000-11-10 2002-07-25 The Penn State Research Foundation Structure de modelisation utile pour predire le nombre, le type et la distribution des croisements dans des experiences d'evolution dirigee
JP4776146B2 (ja) 2001-01-10 2011-09-21 ザ・ペン・ステート・リサーチ・ファンデーション 細胞代謝をモデル化する方法及びシステム
WO2002083868A2 (fr) 2001-04-16 2002-10-24 California Institute Of Technology Variantes d'oxygénase à cytochrome p450 mues par le peroxyde
JP2004532038A (ja) * 2001-05-17 2004-10-21 ディヴァーサ コーポレイション 新規抗原結合分子の治療、診断、予防、酵素、産業ならびに農業各分野への応用とそのための新規抗原結合分子の作製とスクリーニングの方法
US7226768B2 (en) 2001-07-20 2007-06-05 The California Institute Of Technology Cytochrome P450 oxygenases
EP2278509B1 (fr) 2002-03-01 2014-11-19 Codexis Mayflower Holdings, LLC Procédés, systèmes et logiciel pour identifier des biomolécules fonctionnelles
JP4851687B2 (ja) 2002-03-09 2012-01-11 マキシジェン, インコーポレイテッド 定向進化のための交叉点の最適化
US9321832B2 (en) 2002-06-28 2016-04-26 Domantis Limited Ligand
US7826975B2 (en) 2002-07-10 2010-11-02 The Penn State Research Foundation Method for redesign of microbial production systems
AU2003256480B2 (en) 2002-07-10 2008-03-06 The Penn State Research Foundation Method for determining gene knockout strategies
EP1576151A4 (fr) 2002-08-06 2006-05-17 Verdia Inc Variants de l'amine oxydase ap1
MXPA05011585A (es) 2003-04-29 2006-05-25 Pioneer Hi Bred Int Genes de glifosato-n-acetil transferasa (gat) novedosos.
US7524664B2 (en) 2003-06-17 2009-04-28 California Institute Of Technology Regio- and enantioselective alkane hydroxylation with modified cytochrome P450
US7435570B2 (en) 2003-08-11 2008-10-14 California Institute Of Technology Thermostable peroxide-driven cytochrome P450 oxygenase variants and methods of use
US8715988B2 (en) 2005-03-28 2014-05-06 California Institute Of Technology Alkane oxidation by modified hydroxylases
US11214817B2 (en) 2005-03-28 2022-01-04 California Institute Of Technology Alkane oxidation by modified hydroxylases
EP2069513A4 (fr) 2006-08-04 2012-03-21 California Inst Of Techn Procédés et systèmes de fluoration sélective des molécules organiques
US8252559B2 (en) 2006-08-04 2012-08-28 The California Institute Of Technology Methods and systems for selective fluorination of organic molecules
GB0617387D0 (en) * 2006-09-04 2006-10-11 Glaxo Group Ltd Synthetic gene
MX349825B (es) 2007-03-30 2017-08-15 Univ New York State Res Found Virus atenuados utiles para vacunas.
EP2297310A2 (fr) 2008-05-23 2011-03-23 E. I. du Pont de Nemours and Company Nouveaux gènes dgat permettant d'obtenir une production accrue de lipides de stockage de semences et des profils modifiés d'acides gras dans des plantes à graines oléagineuses
US8383346B2 (en) 2008-06-13 2013-02-26 Codexis, Inc. Combined automated parallel synthesis of polynucleotide variants
ES2709481T3 (es) 2008-09-26 2019-04-16 Tocagen Inc Vectores recombinantes
CA2805803A1 (fr) 2010-08-13 2012-02-16 Pioneer Hi-Bred International, Inc. Procedes et compositions comprenant des sequences presentant une activite d'hydroxyphenylpyruvate dioxygenase (hppd)
US9322007B2 (en) 2011-07-22 2016-04-26 The California Institute Of Technology Stable fungal Cel6 enzyme variants
KR101148191B1 (ko) * 2011-09-27 2012-05-23 김후정 에리스로포이에틴-유래 펩타이드 및 그 용도
RU2014148769A (ru) 2012-05-04 2016-06-27 Е.И. Дюпон Де Немур Энд Компани Композиции и способы, включающие последовательности, характеризующиеся мегануклеазной активностью
US9663532B2 (en) 2012-10-29 2017-05-30 University Of Rochester Artemisinin derivatives, methods for their preparation and their use as antimalarial agents
WO2014092458A1 (fr) * 2012-12-11 2014-06-19 연세대학교 산학협력단 Procédé pour synthétiser une bibliothèque de gènes à l'aide d'une combinaison de codons et d'une mutagenèse
EP2970995A1 (fr) 2013-03-14 2016-01-20 Pioneer Hi-Bred International, Inc. Compositions ayant une activité de dicamba décarboxylase et procédés d'utilisation
US20160040149A1 (en) 2013-03-14 2016-02-11 Pioneer Hi-Bred International Inc. Compositions Having Dicamba Decarboxylase Activity and Methods of Use
CA2901316A1 (fr) 2013-03-15 2014-09-25 Pioneer Hi-Bred International, Inc. Polypeptides phi-4 et leurs procedes d'utilisation
EP3032942B1 (fr) 2013-08-16 2020-03-11 Pioneer Hi-Bred International, Inc. Protéines insecticides et leurs procédés d'utilisation
EA031651B1 (ru) 2013-09-13 2019-02-28 Пайонир Хай-Бред Интернэшнл, Инк. Инсектицидные белки и способы их применения
WO2015100277A2 (fr) 2013-12-23 2015-07-02 University Of Rochester Procédés et compositions pour la synthèse ribosomique de peptides macrocycliques
RU2747978C2 (ru) 2014-02-07 2021-05-18 Пайонир Хай-Бред Интернэшнл, Инк. Инсектицидные белки и способы их применения
US10480007B2 (en) 2014-02-07 2019-11-19 Pioneer Hi-Bred International, Inc. Insecticidal proteins from plants
RU2733898C2 (ru) 2014-10-16 2020-10-09 Пайонир Хай-Бред Интернэшнл, Инк. Инсектицидные белки и способы их применения
EP3267796B1 (fr) 2015-03-11 2023-08-09 Pioneer Hi-Bred International, Inc. Combinaisons de pip-72 insecticides et procédés d'utilisation
WO2016186986A1 (fr) 2015-05-19 2016-11-24 Pioneer Hi Bred International Inc Protéines insecticides et leurs procédés d'utilisation
EP3943602A1 (fr) 2015-08-06 2022-01-26 Pioneer Hi-Bred International, Inc. Protéines insecticides d'origine végétale et leurs méthodes d'utilisation
WO2017105987A1 (fr) 2015-12-18 2017-06-22 Pioneer Hi-Bred International, Inc. Protéines insecticides et leurs procédés d'utilisation
MX2018013249A (es) 2016-05-04 2019-02-13 Pioneer Hi Bred Int Proteinas insecticidas y metodos para sus usos.
MX2018015906A (es) 2016-07-01 2019-04-04 Pioneer Hi Bred Int Proteinas insecticidas de plantas y metodos para sus usos.
WO2018048869A1 (fr) * 2016-09-06 2018-03-15 Bioventures, Llc Compositions et procédés pour générer des vecteurs de vaccin atténués et/ou incompétents pour la réplication sans risque de réversion
BR112019008800A2 (pt) 2016-11-01 2019-07-16 Pioneer Hi Bred Int polipeptídeo inseticida, composição inseticida, polinucleotídeo recombinante, construto de dna, célula de planta ou planta transgênica, método para inibir o crescimento ou exterminar uma população de praga de inseto agrícola, método para inibir o crescimento ou exterminar uma praga de inseto, método para controlar infestação de inseto lepidoptera e/ou coleoptera em uma planta transgênica e fornecer gerenciamento de resistência de inseto e uso de pelo menos um polipeptídeo inseticida
CN110088123B (zh) 2016-12-14 2023-10-20 先锋国际良种公司 杀昆虫蛋白及其使用方法
CA3046226A1 (fr) 2016-12-22 2018-06-28 Pioneer Hi-Bred International, Inc. Proteines insecticides et leurs procedes d'utilisation
BR112019016394A2 (pt) 2017-02-08 2020-04-07 Pioneer Hi Bred Int construto de dna, pilha molecular, pilha de melhoramento, planta transgênica ou progênie da mesma, composição e método para controlar uma população de praga de inseto
EP3363900A1 (fr) * 2017-02-21 2018-08-22 ETH Zurich Assemblage d'adn multiplexe guidé par l'évolution de pièces d'adn, voies et géomes
WO2018208882A1 (fr) 2017-05-11 2018-11-15 Pioneer Hi-Bred International, Inc. Protéines insecticides et leurs procédés d'utilisation
WO2019040335A1 (fr) 2017-08-19 2019-02-28 University Of Rochester Dérivés de michéliolide, leurs procédés de préparation et leur utilisation à titre d'agents anticancéreux et anti-inflammatoires
WO2020256099A1 (fr) * 2019-06-21 2020-12-24 国立大学法人大阪大学 Procédé de préparation d'un virus à arn recombiné artificiel intégrant de manière stable un gène étranger
EP4182466A2 (fr) 2020-07-14 2023-05-24 Pioneer Hi-Bred International, Inc. Protéines insecticides et leurs procédés d'utilisation
WO2023173084A1 (fr) 2022-03-11 2023-09-14 University Of Rochester Cyclopepticorps et leurs utilisations

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
IL99553A0 (en) * 1990-09-28 1992-08-18 Ixsys Inc Compositions containing oligonucleotides linked to expression elements,a kit for the preparation of vectors useful for the expression of a diverse population of random peptides and methods utilizing the same
US5837458A (en) * 1994-02-17 1998-11-17 Maxygen, Inc. Methods and compositions for cellular and metabolic engineering
AU4597197A (en) * 1996-09-27 1998-04-17 Introgene B.V. Methods for optimization of gene therapy by recursive sequence shuffling and selection

Also Published As

Publication number Publication date
EP1117777A2 (fr) 2001-07-25
WO2000018906A3 (fr) 2000-10-26
KR20010085850A (ko) 2001-09-07
JP2002537758A (ja) 2002-11-12
IL140441A0 (en) 2002-02-10
WO2000018906A9 (fr) 2000-08-31
WO2000018906A2 (fr) 2000-04-06
AU1199000A (en) 2000-04-17

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Effective date: 20040928