AU2001264610B2 - Single copy genomic hybridization probes and method of generating same - Google Patents

Single copy genomic hybridization probes and method of generating same Download PDF

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Publication number
AU2001264610B2
AU2001264610B2 AU2001264610A AU2001264610A AU2001264610B2 AU 2001264610 B2 AU2001264610 B2 AU 2001264610B2 AU 2001264610 A AU2001264610 A AU 2001264610A AU 2001264610 A AU2001264610 A AU 2001264610A AU 2001264610 B2 AU2001264610 B2 AU 2001264610B2
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AU
Australia
Prior art keywords
sequence
probe
nucleic acid
probes
sequences
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Ceased
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AU2001264610A
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English (en)
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AU2001264610A1 (en
Inventor
Patricia M. Cazarro
Joan H. M. Knoll
Peter K. Rogan
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Childrens Mercy Hospital
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Childrens Mercy Hospital
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Publication date
Priority claimed from US09/573,080 external-priority patent/US6828097B1/en
Application filed by Childrens Mercy Hospital filed Critical Childrens Mercy Hospital
Publication of AU2001264610A1 publication Critical patent/AU2001264610A1/en
Application granted granted Critical
Publication of AU2001264610B2 publication Critical patent/AU2001264610B2/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6841In situ hybridisation
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
AU2001264610A 2000-05-16 2001-05-15 Single copy genomic hybridization probes and method of generating same Ceased AU2001264610B2 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US09/573,080 2000-05-16
US09/573,080 US6828097B1 (en) 2000-05-16 2000-05-16 Single copy genomic hybridization probes and method of generating same
US09/854,867 2001-05-14
US09/854,867 US7014997B2 (en) 2000-05-16 2001-05-14 Chromosome structural abnormality localization with single copy probes
PCT/US2001/015674 WO2001088089A2 (en) 2000-05-16 2001-05-15 Single copy genomic hybridization probes and method of generating same

Publications (2)

Publication Number Publication Date
AU2001264610A1 AU2001264610A1 (en) 2002-02-14
AU2001264610B2 true AU2001264610B2 (en) 2007-01-04

Family

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Family Applications (2)

Application Number Title Priority Date Filing Date
AU2001264610A Ceased AU2001264610B2 (en) 2000-05-16 2001-05-15 Single copy genomic hybridization probes and method of generating same
AU6461001A Pending AU6461001A (en) 2000-05-16 2001-05-15 Single copy genomic hybridization probes and method of generating same

Family Applications After (1)

Application Number Title Priority Date Filing Date
AU6461001A Pending AU6461001A (en) 2000-05-16 2001-05-15 Single copy genomic hybridization probes and method of generating same

Country Status (8)

Country Link
US (2) US20080085509A1 (enExample)
EP (1) EP1285093A4 (enExample)
JP (1) JP2004523201A (enExample)
AU (2) AU2001264610B2 (enExample)
CA (1) CA2409752A1 (enExample)
IL (1) IL152727A0 (enExample)
NZ (2) NZ539223A (enExample)
WO (1) WO2001088089A2 (enExample)

Families Citing this family (24)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6828097B1 (en) 2000-05-16 2004-12-07 The Childrens Mercy Hospital Single copy genomic hybridization probes and method of generating same
US7081339B2 (en) * 2002-04-12 2006-07-25 Primera Biosystems, Inc. Methods for variation detection
AU2003275377A1 (en) * 2002-09-30 2004-04-19 The Children's Mercy Hospital Subtelomeric dna probes and method of producing the same
GB0326197D0 (en) * 2003-11-10 2003-12-17 Randox Lab Ltd Molecular marker
AU2005228209A1 (en) * 2004-03-26 2005-10-13 The Children's Mercy Hospital Computational selection of probes for localizing chromosome breakpoints
US20060223075A1 (en) * 2005-03-29 2006-10-05 Exagen Diagnostics, Inc. Unique sequence hybridization probes (USP)
US8407013B2 (en) 2005-06-07 2013-03-26 Peter K. Rogan AB initio generation of single copy genomic probes
US7734424B1 (en) 2005-06-07 2010-06-08 Rogan Peter K Ab initio generation of single copy genomic probes
US7833713B2 (en) 2005-11-18 2010-11-16 The Children's Mercy Hospital Mitigation of Cot-1 DNA distortion in nucleic acid hybridization
EP2069537B1 (en) 2006-09-01 2011-08-31 Ventana Medical Systems, Inc. Method for producing nucleic acid probes
DK2078197T3 (en) 2006-11-01 2016-05-23 Ventana Med Syst Inc Haptenes, hapten conjugates, compositions thereof and processes for their preparation and use
WO2008119084A1 (en) * 2007-03-28 2008-10-02 The Children's Mercy Hospital Method for identifying and selecting low copy nucleic acid segments
US7682789B2 (en) 2007-05-04 2010-03-23 Ventana Medical Systems, Inc. Method for quantifying biomolecules conjugated to a nanoparticle
EP3561513A1 (en) 2007-05-23 2019-10-30 Ventana Medical Systems, Inc. Polymeric carriers for immunohistochemistry and in situ hybridization
US8703490B2 (en) 2008-06-05 2014-04-22 Ventana Medical Systems, Inc. Compositions comprising nanomaterials and method for using such compositions for histochemical processes
CN102858996B (zh) * 2009-11-23 2016-01-13 拜尔作物科学股份有限公司 原种事件ee-gm3以及用于鉴定生物样品中的该事件的方法和试剂盒
PT2503873T (pt) 2009-11-23 2017-05-18 Bayer Cropscience Nv Plantas de soja tolerantes a herbicida e métodos para identificar as mesmas
JP5838169B2 (ja) * 2009-12-31 2016-01-06 ヴェンタナ メディカル システムズ, インク. 一意的に特異的核酸プローブを生成するための方法
US10030268B2 (en) * 2014-11-11 2018-07-24 Abbott Molecular Inc. Hybridization probes and methods
US20230183780A1 (en) 2016-07-25 2023-06-15 InVivo BioTech Services GmbH Dna probes for in situ hybridization on chromosomes
JP6730525B2 (ja) 2016-11-21 2020-07-29 ナノストリング テクノロジーズ,インコーポレイティド 化学組成物とそれを利用する方法
EP3794146B1 (en) 2018-05-14 2025-12-10 Bruker Spatial Biology, Inc. Method for identifying a predetermined nucleotide sequence
EP3940075A1 (en) * 2020-07-17 2022-01-19 Istituto Nazionale Di Genetica Molecolare-INGM Inhibitors of line1 and uses thereof
CN113483931B (zh) * 2021-07-02 2023-01-24 中国国家铁路集团有限公司 弓网接触力区段异常识别方法及装置

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6222029B1 (en) * 1997-08-01 2001-04-24 Genset 5′ ESTs for secreted proteins expressed in brain

Family Cites Families (12)

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US5110920A (en) 1982-01-22 1992-05-05 Cetus Corporation HLA typing method and DNA probes used therein
US5985549A (en) 1985-10-22 1999-11-16 University Of Massachusetts Non-isotopic in-situ hybridization method for detection of nucleic acids
US5721098A (en) * 1986-01-16 1998-02-24 The Regents Of The University Of California Comparative genomic hybridization
US5756696A (en) * 1986-01-16 1998-05-26 Regents Of The University Of California Compositions for chromosome-specific staining
US5447841A (en) 1986-01-16 1995-09-05 The Regents Of The Univ. Of California Methods for chromosome-specific staining
US5273881A (en) 1990-05-07 1993-12-28 Daikin Industries, Ltd. Diagnostic applications of double D-loop formation
US6040140A (en) * 1991-12-11 2000-03-21 Thomas Jefferson University Methods for screening and treating leukemias resulting from all-1 region chromosome abnormalities
US6121419A (en) * 1992-06-17 2000-09-19 Arch Development Corp. Compositions and methods for detecting gene rearrangements and translocations
JP3509100B2 (ja) * 1993-01-21 2004-03-22 プレジデント アンド フェローズ オブ ハーバード カレッジ 哺乳動物のストレスプロモーターを利用する化合物の毒性測定方法および診断用キット
US6150160A (en) * 1995-11-16 2000-11-21 The John Hopkins University Compositions and methods of use of mammalian retrotransposons
US6828097B1 (en) * 2000-05-16 2004-12-07 The Childrens Mercy Hospital Single copy genomic hybridization probes and method of generating same
WO2002093130A2 (en) * 2001-05-14 2002-11-21 Cancer Genetics, Inc. Methods of analyzing chromosomal translocations using fluorescence in situ hybridization (fish)

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6222029B1 (en) * 1997-08-01 2001-04-24 Genset 5′ ESTs for secreted proteins expressed in brain

Also Published As

Publication number Publication date
WO2001088089A3 (en) 2002-07-04
AU6461001A (en) 2001-11-26
IL152727A0 (en) 2003-06-24
US20090312533A1 (en) 2009-12-17
CA2409752A1 (en) 2001-11-22
WO2001088089A8 (en) 2005-04-07
WO2001088089A2 (en) 2001-11-22
EP1285093A2 (en) 2003-02-26
EP1285093A4 (en) 2005-10-12
NZ522406A (en) 2006-05-26
NZ539223A (en) 2006-10-27
JP2004523201A (ja) 2004-08-05
US20080085509A1 (en) 2008-04-10

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MK14 Patent ceased section 143(a) (annual fees not paid) or expired