WO2022036858A1 - 一种新型Cap2结构5'帽子类似物及其制备方法 - Google Patents
一种新型Cap2结构5'帽子类似物及其制备方法 Download PDFInfo
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Definitions
- the invention belongs to the technical field of genetic engineering, and in particular relates to a novel Cap2 structure 5' cap analog and a preparation method thereof.
- RNA with Cap 0 or Cap 1 there are two methods for synthesizing capped mRNA in vitro.
- the first is to cap the mRNA with vaccinia virus capping enzyme after transcription to generate RNA with Cap 0 or Cap 1.
- This capping method is very efficient. But the output is erratic and the price is expensive.
- the enzymatic capping method cannot generate caps of Cap 2 and m6Am.
- the second method is to add an excess of cap analog to capping during transcription.
- the most commonly used cap analog is ARCA, which produces an immunogenic Cap 0, but the capping efficiency is only 70%.
- the yield of this method is also relatively low, at most 1.5 mg of RNA can be prepared per milliliter of transcription reaction system, and the transcription product has high immunogenicity.
- Cleancap belongs to Cap 1. Unlike ARCA, which uses a dimer (m7GpppG) to initiate T7 transcription, CleanCap uses a trimer (m7GpppAmG) to initiate T7 transcription.
- the yield of this method is relatively high, 4 mg of capped RNA is prepared per milliliter of transcription reaction system, the capping efficiency can reach 90%, and the immunogenicity of the transcription product is lower than that of ARCA.
- the present invention provides a novel Cap2 structure 5' cap analog and a preparation method thereof.
- the novel Cap2 structure 5' cap analog provided by the present invention has higher synthesis efficiency, higher capping efficiency, lower immunogenicity and higher protein translation efficiency.
- a novel Cap2 structure 5' cap analog the molecular formula of the novel Cap2 structure 5' cap analog is selected from any of the following;
- the present invention also provides the preparation method of the novel Cap2 structure 5' cap analog described in the above technical solution, comprising the following steps:
- step 2) Dissolve 2'-O-Methyl-ADP, 2'-O-Methyl-GDP, 2'-O-Methyl-CDP and 2'-O-Methyl-UDP obtained in step 1) in RNA-free
- the enzyme water was then mixed with 7-Methylguanosine, 7-Methyl-3'-O-Methylguanosine, guanosyltransferase, and 2 ⁇ Reaction Buffer and incubated to obtain m7G(5')ppp(5')(2'OMeA /G/C/U) and 3'-O-Me-m7G(5')ppp(5')(2'OMeA/G/C/U);
- the moles of 2'-O-Methyl-ATP, 2'-O-Methyl-GTP, 2'-O-Methyl-CTP and 2'-O-Methyl-UTP are the same as those of RNase-free
- the volume ratio of water is 1-30 mmol: 14 ⁇ L.
- the volume ratio of the step 1) RNase-free water to phosphohydrolase and 2 ⁇ Reaction Buffer is 14:1:15.
- the enzymatic activity of the phosphohydrolase is 50000U;
- the components of the 2 ⁇ Reaction Buffer include: 50 mM Tris-HCl, 5 mM KCl, 1 mM MgCl 2 , 1 mM DTT, pH 8.
- the incubation temperature in the steps 1) to 3) is 37° C.
- the incubation time is 1 h, respectively.
- the volume ratio of the step 2) RNase-free water to 7-Methylguanosine, 7-Methyl-3'-O-Methylguanosine, guanosyltransferase, and 2 ⁇ Reaction Buffer is 11:10:10:1:22 .
- the volume ratio of the step 3) RNase-free water to T4 RNA Ligase 1 and 2 ⁇ T4 RNA Ligase Reaction Buffer is 11:1:22.
- the components of the 2 ⁇ T4 RNA Ligase Reaction Buffer include: 60 mM Tris-HCl, 20 mM MgCl 2 , 20 mM DTT and 2 mM ATP.
- the enzymatic activity of the T4 RNA Ligase 1 is 10000U.
- the 32 Cap2 structure cap analogs in the present invention have higher synthesis efficiency
- the 32 Cap2 structure cap analogs in the present invention have higher capping efficiency
- the 32 Cap2 structural cap analogs in the present invention have lower immunogenicity
- the 32 Cap2 structural cap analogs in the present invention have higher protein translation efficiency.
- Figures 1-3 verify the structure and homogeneity of each final product by reversed-phase high performance liquid chromatography (RP-HPLC) at 25°C;
- Figures 4-7 are the fluorescence titration curves of cap analog binding. As the ligand concentration increased, the change in the curve indicated a weaker binding between eIF4E and the corresponding cap analog. The increase in fluorescence signal with increasing ligand concentration is due to an increase in free cap analog in solution. The fluorescence intensity is expressed as a relative value;
- Figure 8 shows the inhibitory effect of cap analogs on the translation of globulin mRNA in rabbit reticulocyte lysate; native rabbit globulin mRNA was translated in the rabbit reticulocyte lysate system and detected by incorporating [ 3 H]Leu into the protein globulin synthesis;
- Fig. 9 is the structural formula of the cap structure analog provided by the present invention.
- Figure 10 shows that the 32 novel Cap2 cap structure analogs provided by the present invention are applied to mRNA synthesis to effectively increase the mRNA synthesis efficiency.
- the synthetic product (4-6 mg) using the novel Cap2 cap structure analog is significantly higher In ARCA (1.5mg) and Cleancap (3.8mg);
- Figure 11 shows that 32 new Cap2 cap structure analogs provided by the present invention are applied to mRNA synthesis to effectively increase the capping efficiency of mRNA. 70% of ARCA and 90% of Cleancap;
- Figure 12 shows that the 32 novel Cap2 cap structure analogs provided by the present invention are applied to mRNA synthesis to effectively reduce immunogenicity, and the intracellular immunogenicity of the synthetic product using the novel Cap2 cap structure analog is only the same as that of the ACRA structure. 9%-52% of mRNA;
- Figure 13 shows that the novel Cap2 cap structure analog provided by the present invention is applied to mRNA synthesis to effectively improve the protein translation efficiency, and the mRNA encoding luciferase (Luc) is capped with ARCA, Cleancap and the new Cap2 cap structure analog respectively. According to the expression intensity of the mRNA in mice, it can be found that the Luc mRNA with the novel Cap2 cap analog has the highest expression intensity.
- the present invention provides a novel Cap2 structure 5' cap analog, and the molecular formula of the novel Cap2 structure 5' cap analog is selected from any one of the following;
- the commonality of the novel Cap2 structure 5' cap analog is based on methoxy modification of 2'OMe, and methoxy modification of A ⁇ G ⁇ C ⁇ U and m7G nucleosides to 2'OMeA or 2'OMeG or 2'OMeC or 2'OMeU and 3'-O-Me-m7G.
- Caps of novel Cap2 structures are formed by enzymatic reactions.
- the present invention also provides the preparation method of the novel Cap2 structure 5' cap analog described in the above technical solution, comprising the following steps:
- step 2) Dissolve 2'-O-Methyl-ADP, 2'-O-Methyl-GDP, 2'-O-Methyl-CDP and 2'-O-Methyl-UDP obtained in step 1) in RNA-free
- the enzyme water was then mixed with 7-Methylguanosine, 7-Methyl-3'-O-Methylguanosine, guanosyltransferase, and 2 ⁇ Reaction Buffer and incubated to obtain m7G(5')ppp(5')(2'OMeA /G/C/U) and 3'-O-Me-m7G(5')ppp(5')(2'OMeA/G/C/U);
- 2'-O-Methyl-ATP, 2'-O-Methyl-GTP, 2'-O-Methyl-CTP and 2'-O-Methyl-UTP are respectively dissolved in RNase-free water, and then respectively mixed with Phosphohydrolase and 2 ⁇ Reaction Buffer were mixed and incubated to obtain 2'-O-Methyl-ADP, 2'-O-Methyl-GDP, 2'-O-Methyl-CDP and 2'-O-Methyl-UDP.
- the 2'-O-Methyl-ATP, 2'-O-Methyl-GTP, 2'-O-Methyl-CTP and 2'-O-Methyl-UTP may use conventional commercial products.
- the amount of the substances of 2'-O-Methyl-ATP, 2'-O-Methyl-GTP, 2'-O-Methyl-CTP and 2'-O-Methyl-UTP is related to RNase-free
- the volume ratio of the water is preferably 1-30 mmol: 14 ⁇ L, more preferably 10 mmol: 14 ⁇ L.
- the present invention does not specifically limit the sources of the 2'-O-Methyl-ATP, 2'-O-Methyl-GTP, 2'-O-Methyl-CTP and 2'-O-Methyl-UTP, and commercially available products are used. Or it can be prepared by conventional methods.
- the volume ratio of the RNase-free water to phosphohydrolase and 2 ⁇ Reaction Buffer is preferably 14:1:15.
- the enzymatic activity of the phosphohydrolase is preferably 50,000 U; the components of the 2 ⁇ Reaction Buffer preferably include: 50 mM Tris-HCl, 5 mM KCl, 1 mM MgCl 2 , 1 mM DTT, and the pH is 8.
- the temperature of the incubation is preferably 37°C, and the incubation time is preferably 1 h.
- the 2'-O-Methyl-ATP, 2'-O-Methyl-GTP, 2'-O-Methyl-CTP and 2'-O-Methyl-UTP are preferably purified by HPLC and then dissolved in RNase-free water.
- the obtained 2'-O-Methyl-ADP, 2'-O-Methyl-GDP, 2'-O-Methyl-CDP and 2'-O-Methyl-UDP are respectively dissolved in RNase-free water, and then respectively Mixed with 7-Methylguanosine, 7-Methyl-3'-O-Methylguanosine, guanosyltransferase, and 2 ⁇ Reaction Buffer and incubated to obtain m7G(5')ppp(5')(2'OMeA/G/C/ U) and 3'-O-Me-m7G(5')ppp(5')(2'OMeA/G/C/U).
- the volume ratio of the RNase-free water to 7-Methylguanosine, 7-Methyl-3'-O-Methylguanosine, guanosyltransferase and 2 ⁇ Reaction Buffer is preferably 11:10:10:1:22 .
- the enzymatic activity of the guanosyltransferase is preferably 50000U.
- the components of the 2 ⁇ Reaction Buffer preferably include: 50 mM Tris-HCl, 5 mM KCl, 1 mM MgCl 2 , 1 mM DTT, and the pH value is 8.
- the source of the 7-Methylguanosine and 7-Methyl-3'-O-Methylguanosine is not particularly limited in the present invention, and can be prepared by using conventional commercially available or conventional preparation methods.
- the temperature of the incubation is preferably 37°C, and the incubation time is preferably 1 h.
- the m7G(5')ppp(5')(2'OMeA/G/C/U) and 3'-O-Me-m7G(5')ppp(5')(2'OMeA/G) obtained by the present invention /C/U) were dissolved in RNase-free water, mixed with T4 RNA Ligase 1, and then mixed with 2'-O-Methyl-ATP, 2'-O-Methyl-GTP, 2'-O-Methyl-CTP Mixed with 2'-O-Methyl-UTP, then mixed with 2 ⁇ T4 RNA Ligase Reaction Buffer and incubated to obtain a new Cap2 structure 5' cap analog.
- the m7G(5')ppp(5')(2'OMeA/G/C/U) and 3'-O-Me-m7G(5')ppp(5')(2'OMeA /G/C/U) is preferably purified by HPLC and then dissolved in RNase-free water.
- the volume ratio of the RNase-free water to T4 RNA Ligase 1 and 2 ⁇ T4 RNA Ligase Reaction Buffer is preferably 11:1:22.
- the enzymatic activity of the T4 RNA ligase 1 is preferably 10000U.
- the components of the 2 ⁇ T4 RNA Ligase Reaction Buffer preferably include: 60 mM Tris-HCl, 20 mM MgCl 2 , 20 mM DTT and 2 mM ATP.
- the temperature of the incubation is preferably 37°C, and the incubation time is preferably 1 h.
- step 3 The solution obtained in step 3 was purified by HPLC and dissolved in RNase-free water for use, with a total volume of 11 ⁇ l.
- step 5 The solution obtained in step 5 was purified by HPLC and dissolved in RNase-free water as follows:
- the molecular formula is as follows:
- Eukaryotic initiation factor 4E is a cap-binding protein that specifically recognizes the cap structure at the 5' end of mRNA, and plays an important role in the initiation of eukaryotic translation. Because eIF4E itself has tryptophan, it can detect fluorescence at 337nm wavelength when excited at 280nm wavelength. After binding to the cap structure, the fluorescence is weakened. Therefore, this method is used as the standard for detecting the binding ability of the cap structure to eIF4E. The results are shown in Figure 4-7.
- Micrococcal nuclease treatment of rabbit reticulocyte lysates removes nucleic acids and serves as an in vitro translation system for mRNAs in which mRNAs can be expressed.
- natural rabbit globulin mRNA was added at a final concentration of 5ug/ml, and 3 H-labeled leucine was added at the same time.
- Micrococcal nuclease was used to treat rabbit reticulocyte lysate to remove nucleic acid, which was used as a reaction system of mRNA in vitro translation system, in which mRNA could be expressed.
- natural rabbit globulin mRNA was added at a final concentration of 5 ⁇ g/ml, and 3 H-labeled leucine was added at the same time.
- 100 ⁇ mol of Cap2 cap analogs (ARCA and cleancap were used as controls) were added to each 1 ml reaction system, and the protein in the reaction system was extracted after 24 h, and the content of globulin 3 H was detected.
- T7 UTP Solution(75mM) 2 ⁇ l Linearized plasmid template ⁇ 8 ⁇ l
- T7 Enzyme Mix 2 ⁇ l ARCA/Cleancap/Cap2 2 ⁇ l Nuclease-free water to 20 ⁇ l
- the mRNA molecules with different cap structures obtained in Example 1 are subjected to enzyme digestion, and the ratio of capped and uncapped mRNA molecules can be determined in liquid chromatography mass spectrometry experiments.
- Beads were centrifuged at 15000g for 5min, the supernatant was removed, 120 ⁇ l of annealed mRNA and tags were added, and incubated at room temperature for 30min, with gentle shaking during the period to ensure sufficient binding;
- Human PBMC cells were cultured to 10 6 cells/well, and 5 ⁇ g of ARCA, Cleancap and Cap 2 cap mRNA were transfected using Lipofectamine 2000. After 24 h, cells were harvested by trypsinization and resuspended in PBS, centrifuged, and harvested.
- the fixative was added to the cells, glycine was added for 15 min to stop the fixation, and the cells were collected by centrifugation. Add lysate to resuspend the cells, incubate on ice for 30min, centrifuge at 2400g for 10min at 4°C, and collect the supernatant.
- TLR3, TLR7, TLR8 and RIG-1 (2-10 ⁇ g) were added to the supernatant (6-10 mg), and incubated at 4°C with gentle agitation for 2 h.
- ProteinA/G magnetic beads (40 ⁇ L) were added and incubated at 4°C with gentle agitation for 1 h.
- the magnetic beads were pelleted by centrifugation at 2500 rpm for 30 s, the supernatant was removed, and the magnetic beads were resuspended in 500 ⁇ L RIP buffer. Washing was repeated three times in RIP buffer followed by one wash in PBS.
- RNA was reverse transcribed (RT) into cDNA, and primers were designed according to the mRNA sequence for quantitative PCR analysis.
- the mRNA immunogenicity was proportional to the number of mRNA copies precipitated by magnetic beads.
- the novel Cap2 cap structure analog prepared in Example 1 was used for efficient protein translation efficiency in mRNA synthesis.
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Abstract
Description
组分 | 用量 |
T7 10X Reaction Buffer | 2μl |
T7 ATP Solution(75mM) | 2μl |
T7 CTP Solution(75mM) | 2μl |
T7 GTP Solution(75mM) | 2μl |
T7 UTP Solution(75mM) | 2μl |
线性化质粒模板 | <8μl |
T7 Enzyme Mix | 2μl |
ARCA/Cleancap/Cap2 | 2μl |
Nuclease-free水 | 至20μl |
ARCA | Cleancap | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
1.5 | 3.8 | 4.5 | 4.9 | 5.8 | 4.7 | 4.4 | 5.1 | 5.3 |
8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 |
5.3 | 4.8 | 6.0 | 4.7 | 4.9 | 5.1 | 5.5 | 4.6 | 4.2 |
17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 |
4.7 | 4.1 | 4.4 | 4.6 | 4.8 | 4.6 | 4.5 | 4.7 | 4.1 |
26 | 27 | 28 | 29 | 30 | 31 | 32 | —— | —— |
4.6 | 4.7 | 4.8 | 5.3 | 5.3 | 4.5 | 4.3 | —— | —— |
10x RNase H reaction buffer | 12μl |
RNase H probe | 500pmol |
mRNA | 100pmol |
total | 120μl |
ARCA | Cleancap | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
70% | 90% | 94.91% | 95.1% | 94.82% | 94.72% | 94.88% | 94.65% | 94.76% |
8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 |
94.79% | 94.73% | 94.93% | 95.2% | 94.86% | 94.77% | 94.82% | 94.83% | 94.84% |
17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 |
94.91% | 94.98% | 95% | 94.42% | 94.55% | 94.83% | 94.65% | 94.72% | 94.8% |
26 | 27 | 28 | 29 | 30 | 31 | 32 | —— | —— |
94.97% | 94.88% | 94.62% | 94.93% | 94.8% | 94.7% | 94.66% | —— | —— |
ARCA | Cleancap | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
1 | 0.76 | 0.40 | 0.37 | 0.28 | 0.48 | 0.52 | 0.38 | 0.24 |
8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 |
0.31 | 0.4 | 0.18 | 0.31 | 0.19 | 0.23 | 0.35 | 0.34 | 0.48 |
17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 |
0.44 | 0.31 | 0.26 | 0.51 | 0.15 | 0.29 | 0.41 | 0.48 | 0.29 |
26 | 27 | 28 | 29 | 30 | 31 | 32 | —— | —— |
0.49 | 0.09 | 0.52 | 0.27 | 0.31 | 0.4 | 0.3 | —— | —— |
Claims (10)
- 一种新型Cap2结构5'帽子类似物,其特征在于,所述新型Cap2结构5'帽子类似物的分子式选自以下任一种;m7G(5')ppp(5')(2'OMeA)p(2'OMeG);m7G(5')ppp(5')(2'OMeG)p(2'OMeG);m7G(5')ppp(5')(2'OMeC)p(2'OMeG);m7G(5')ppp(5')(2'OMeU)p(2'OMeG);m7G(5')ppp(5')(2'OMeA)p(2'OMeA);m7G(5')ppp(5')(2'OMeG)p(2'OMeA);m7G(5')ppp(5')(2'OMeC)p(2'OMeA);m7G(5')ppp(5')(2'OMeU)p(2'OMeA);m7G(5')ppp(5')(2'OMeA)p(2'OMeC);m7G(5')ppp(5')(2'OMeG)p(2'OMeC);m7G(5')ppp(5')(2'OMeC)p(2'OMeC);m7G(5')ppp(5')(2'OMeU)p(2'OMeC);m7G(5')ppp(5')(2'OMeA)p(2'OMeU);m7G(5')ppp(5')(2'OMeG)p(2'OMeU);m7G(5')ppp(5')(2'OMeC)p(2'OMeU);m7G(5')ppp(5')(2'OMeU)p(2'OMeU);3′-O-Me-m7G(5')ppp(5')(2'OMeA)p(2'OMeG);3′-O-Me-m7G(5')ppp(5')(2'OMeG)p(2'OMeG);3′-O-Me-m7G(5')ppp(5')(2'OMeC)p(2'OMeG);3′-O-Me-m7G(5')ppp(5')(2'OMeU)p(2'OMeG);3′-O-Me-m7G(5')ppp(5')(2'OMeA)p(2'OMeA);3′-O-Me-m7G(5')ppp(5')(2'OMeG)p(2'OMeA);3′-O-Me-m7G(5')ppp(5')(2'OMeC)p(2'OMeA);3′-O-Me-m7G(5')ppp(5')(2'OMeU)p(2'OMeA);3′-O-Me-m7G(5')ppp(5')(2'OMeA)p(2'OMeC);3′-O-Me-m7G(5')ppp(5')(2'OMeG)p(2'OMeC);3′-O-Me-m7G(5')ppp(5')(2'OMeC)p(2'OMeC);3′-O-Me-m7G(5')ppp(5')(2'OMeU)p(2'OMeC);3′-O-Me-m7G(5')ppp(5')(2'OMeA)p(2'OMeU);3′-O-Me-m7G(5')ppp(5')(2'OMeG)p(2'OMeU);3′-O-Me-m7G(5')ppp(5')(2'OMeC)p(2'OMeU);3′-O-Me-m7G(5')ppp(5')(2'OMeU)p(2'OMeU)。
- 权利要求1所述的新型Cap2结构5'帽子类似物的制备方法,其特征在于,包括以下步骤:1)将2'-O-Methyl-ATP、2'-O-Methyl-GTP、2'-O-Methyl-CTP和2'-O-Methyl-UTP分别溶解在无RNA酶的水中,再分别与磷酸水解酶、2×Reaction Buffer混合后进行孵育,得到2'-O-Methyl-ADP、2'-O-Methyl-GDP、2'-O-Methyl-CDP和2'-O-Methyl-UDP;2)将所述步骤1)得到的2'-O-Methyl-ADP、2'-O-Methyl-GDP、2'-O-Methyl-CDP和2'-O-Methyl-UDP分别溶解在无RNA酶水中,再分别与7-Methylguanosine、7-Methyl-3'-O-Methylguanosine、鸟苷转移酶、2×Reaction Buffer混合后进行孵育,得到m7G(5')ppp(5')(2'OMeA/G/C/U)和3′-O-Me-m7G(5')ppp(5')(2'OMeA/G/C/U);3)将所述步骤2)得到的m7G(5')ppp(5')(2'OMeA/G/C/U)和3′-O-Me-m7G(5')ppp(5')(2'OMeA/G/C/U)分别溶解在无RNA酶水中,与T4 RNA Ligase1混合后,再分别与2'-O-Methyl-ATP、2'-O-Methyl-GTP、2'-O-Methyl-CTP和2'-O-Methyl-UTP混合,再与2×T4 RNA Ligase Reaction Buffer混合后进行孵育,得到新型Cap2结构5'帽子类似物。
- 根据权利要求2所述的制备方法,其特征在于,所述步骤1)2'-O-Methyl-ATP、2'-O-Methyl-GTP、2'-O-Methyl-CTP和2'-O-Methyl-UTP的物质的量与无RNA酶的水的体积比均为1~30mmol:14μL。
- 根据权利要求2所述的制备方法,其特征在于,所述步骤1)无RNA酶的水与磷酸水解酶、2×Reaction Buffer的体积比为14:1:15。
- 根据权利要求4所述的制备方法,其特征在于,所述磷酸水解酶的酶活为50000U;所述2×Reaction Buffer的组分包括:50mM Tris-HCl、5mM KCl、1mM MgCl 2、1mM DTT,pH值为8。
- 根据权利要求2所述的制备方法,其特征在于,所述步骤1)~3)孵育的温度分别为37℃,所述孵育的时间分别为1h。
- 根据权利要求2所述的制备方法,其特征在于,所述步骤2)无RNA酶水与7-Methylguanosine、7-Methyl-3'-O-Methylguanosine、鸟苷转移酶、2×Reaction Buffer的体积比为11:10:10:1:22。
- 根据权利要求3所述的制备方法,其特征在于,所述步骤3)无RNA酶水与T4 RNA Ligase 1、2×T4 RNA Ligase Reaction Buffer的体积比为11:1:22。
- 根据权利要求2或8所述的制备方法,其特征在于,所述2×T4 RNA Ligase Reaction Buffer的组分包括:60mM Tris-HCl、20mM MgCl 2、20mM DTT和2mM ATP。
- 根据权利要求2或8所述的制备方法,其特征在于,所述T4 RNA Ligase 1的酶活为10000U。
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