WO2020088587A1 - Anti-CD79b Antibodies, Drug Conjugates, and Applications thereof - Google Patents

Anti-CD79b Antibodies, Drug Conjugates, and Applications thereof Download PDF

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WO2020088587A1
WO2020088587A1 PCT/CN2019/114676 CN2019114676W WO2020088587A1 WO 2020088587 A1 WO2020088587 A1 WO 2020088587A1 CN 2019114676 W CN2019114676 W CN 2019114676W WO 2020088587 A1 WO2020088587 A1 WO 2020088587A1
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antibody
amino acid
seq
acid sequence
set forth
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PCT/CN2019/114676
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English (en)
French (fr)
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Nianhe Han
Liwei Song
Deqiang An
Di ZENG
Huali LI
Chun Yang
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Newbio Therapeutics, Inc.
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Priority to AU2019370755A priority Critical patent/AU2019370755A1/en
Priority to KR1020217015203A priority patent/KR20210087044A/ko
Priority to CA3113864A priority patent/CA3113864A1/en
Priority to BR112021006919-4A priority patent/BR112021006919A2/pt
Priority to EP19878515.6A priority patent/EP3873931A4/en
Priority to US17/286,759 priority patent/US20210388082A1/en
Priority to JP2021523617A priority patent/JP7558160B2/ja
Publication of WO2020088587A1 publication Critical patent/WO2020088587A1/en

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    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • A61P35/00—Antineoplastic agents
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    • A61K47/6835—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment the modifying agent being an antibody or an immunoglobulin bearing at least one antigen-binding site
    • A61K47/6851—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment the modifying agent being an antibody or an immunoglobulin bearing at least one antigen-binding site the antibody targeting a determinant of a tumour cell
    • A61K47/6867—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment the modifying agent being an antibody or an immunoglobulin bearing at least one antigen-binding site the antibody targeting a determinant of a tumour cell the tumour determinant being from a cell of a blood cancer
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    • A61K47/6889—Conjugates wherein the antibody being the modifying agent and wherein the linker, binder or spacer confers particular properties to the conjugates, e.g. peptidic enzyme-labile linkers or acid-labile linkers, providing for an acid-labile immuno conjugate wherein the drug may be released from its antibody conjugated part in an acidic, e.g. tumoural or environment
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    • C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
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    • C07K2317/565—Complementarity determining region [CDR]
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Definitions

  • the present invention relates to anti-CD79b antibodies, drug conjugates, and the uses thereof.
  • CD79b (i.e., Ig ⁇ or B29) is a signaling component of the B cell receptor and acts by forming a covalent heterodimer with CD79a (i.e., Ig ⁇ or mb-1) .
  • CD79b includes an extracellular immunoglobulin (Ig) domain, a transmembrane domain, and an intracellular signal domain.
  • Ig immunoglobulin
  • SLL chronic lymphocytic leukemia
  • ADCs antibody-drug conjugates
  • ADCs antibody-drug conjugates
  • Efforts to increase the therapeutic index of ADC have been focused on the specificity of polyclonal and monoclonal antibodies as well as drug linkage and drug release profiles.
  • ADCs have been prepared, such as humanized anti-CD79b antibody (humanized SN8) coupled to monomethyl auristatin E (MMAE) by protease cleavable linker, which is clinically effective in the treatment of NHL.
  • humanized anti-CD79b antibody humanized SN8
  • MMAE monomethyl auristatin E
  • anti-CD79b antibodies or functional fragments thereof are provided herein, the pharmaceutical compositions or drug conjugates thereof, and their use in the treatment of hematological tumors.
  • an anti-CD79b antibody or antigen-binding fragment thereof comprising:
  • HCDR1 comprising the amino acid sequence set forth in SEQ ID NO: 1;
  • HCDR3 comprising the amino acid sequence set forth in SEQ ID NO: 3;
  • LCDR2 comprising the amino acid sequence set forth in SEQ ID NO: 5;
  • the amino acid sequence of HCDR1 of the anti-CD79b antibody or antigen-binding fragment thereof is set forth in SEQ ID NO: 1; the amino acid sequence of HCDR2 is set forth in SEQ ID NO: 2; the amino acid sequence of HCDR3 is set forth in SEQ ID NO: 3; the amino acid sequence of LCDR1 is set forth in SEQ ID NO: 4; the amino acid sequence of LCDR2 is set forth in SEQ ID NO: 5; and the amino acid sequence of LCDR3 is set forth in SEQ ID NO: 6.
  • the anti-CD78b antibody herein comprises (a) a heavy chain having at least 90%, preferably at least 95%, more preferably at least 98%sequence homology to SEQ ID NO: 25, 27, 29, 31 or 33, (b) a light chain having at least 90%, preferably at least 95%, more preferably at least 98%sequence homology to SEQ ID NO: 26, 28, 30, 32 or 34, or (c) the heavy chain in (a) and the light chain in (b) .
  • the amino acid sequence of the heavy chain of the anti-CD79b antibody herein is selected from an amino acid sequence having at least 90%, preferably at least 95%of sequence identity with the amino acid sequence set forth in any one of SEQ ID NOs: 25, 27, 29, 31, and 33, and/or the amino acid sequence of the light chain of the anti-CD79b antibody herein is selected from an amino acid sequence having at least 90%, preferably at least 95%of sequence identity with the amino acid sequence set forth in any one of SEQ ID NOs: 26, 28, 30, 32 and 34.
  • the anti-CD79b antibody herein is selected from the group consisting of the following antibodies:
  • amino acid sequence of the heavy chain is set forth in SEQ ID NO: 25
  • amino acid sequence of the light chain is set forth in SEQ ID NO: 26;
  • amino acid sequence of the heavy chain is set forth in SEQ ID NO: 27, and the amino acid sequence of the light chain is set forth in SEQ ID NO: 28;
  • amino acid sequence of the heavy chain is set forth in SEQ ID NO: 29 and the amino acid sequence of the light chain is set forth in SEQ ID NO: 30;
  • the cytotoxic agent is a chemotherapeutic drug, a growth inhibitor, a toxin, or a radioisotope.
  • a pharmaceutical composition comprising the antibody or antibody-drug conjugate as described herein, and a pharmaceutically acceptable carrier.
  • an article comprising a container and a composition contained within the container, wherein the composition comprises one or more of the CD79b antibodies described herein.
  • the article is a kit comprising a first container containing a composition comprising one or more of the CD79b antibodies described herein; and a second container containing a buffer.
  • the disease is non-Hodgkin's lymphoma (NHL) , aggressive NHL, recurrent aggressive NHL, recurrent painless NHL, refractory NHL, refractory painless NHL, small lymphocytic lymphoma, mantle cell lymphoma, chronic lymphocytic leukemia (CLL) , hairy cell leukemia (HCL) or acute lymphocytic leukemia (ALL) .
  • NHL non-Hodgkin's lymphoma
  • aggressive NHL recurrent aggressive NHL
  • recurrent painless NHL recurrent painless NHL
  • refractory NHL refractory painless NHL
  • small lymphocytic lymphoma mantle cell lymphoma
  • CLL chronic lymphocytic leukemia
  • HCL hairy cell leukemia
  • ALL acute lymphocytic leukemia
  • a method of inhibiting the growth of a cell expressing CD79b comprising contacting the cell with an antibody or antibody-drug conjugate described herein, thereby causing inhibition of growth of the cell.
  • the cell is a B cell.
  • a method of treating a CD79b-mediated disease comprising administering to a mammal in need thereof a therapeutically effective amount of an antibody or antibody-drug conjugate described herein.
  • the CD79b-mediated disease is cancer.
  • a method of determining the presence of CD79b in a sample suspected of containing CD79b comprising exposing the sample to an antibody described herein, and determining the binding of the antibody to CD79b in the sample, wherein the binding of the antibody to CD79b in the sample is indicative of the presence of the protein in the sample.
  • a method of diagnosing a cell proliferative disorder associated with the increase in cells expressing CD79b, such as B cells comprises contacting test cells in a biological sample with the antibody described herein; determining the level of antibody bound to the test cells in the sample by testing the binding of the said antibody to CD79b; and comparing with the level of antibody bound to the cells in the control sample, wherein the level of bound antibody is normalized by relating to the number of cells expressing CD79b in test and control samples, and wherein the level of antibody bound in the test sample higher than the control sample indicates the presence of a cell proliferative disorder associated with cells expressing CD79b.
  • the biological sample is blood or serum.
  • Figure 3 Therapeutical effect of AS11259-ADC-010, 0012, 011, 008 on subcutaneous xenografts of human B-cell lymphoma Ramos in nude mice.
  • Figure 5 Therapeutical effect of AS11259-ADC-001, 0012, 011, 010 on subcutaneous xenografts of human lymphoma Granta-519 in nude mice.
  • Figure 7 Therapeutic effect of AS11259-ADC-001, 0012, 011, 010 on subcutaneous xenografts of human lymphoma WSU-DLCL2 in nude mice.
  • CD79b refers to any natural CD79b from any vertebrate source, including mammals, such as primates (e.g., humans, macaques) , and rodents (e.g., mice and rats) , unless otherwise indicated.
  • the term “CD79b” encompasses "full length” , unprocessed CD79b, and any form of CD79b processed from cells.
  • the term also encompasses naturally occurring variants of CD79b, such as splice variants, allelic variants and isoforms.
  • CD79b polypeptides described herein may be isolated from a variety of sources, such as human tissue types or other sources, or prepared by recombinant or synthetic methods.
  • “Native sequence CD79b polypeptide” includes polypeptides having the same amino acid sequence as the one of the corresponding CD79b polypeptide derived from nature. Such native sequence CD79b polypeptide may be isolated from nature or may be prepared by recombination or synthetic methods.
  • the term "native sequence CD79b polypeptide” specifically encompasses a naturally occurring truncated or secreted form of a particular CD79b polypeptide (e.g., an extracellular domain sequence) , the naturally occurring variant forms (e.g., alternative splicing forms) and naturally occurring allelic variants of the polypeptide.
  • the "extracellular domain” or “ECD” of the CD79b polypeptide refers to a form of CD79b polypeptide substantially free of transmembrane and cytoplasmic domains.
  • the CD79b polypeptide ECD has less than 1%of such transmembrane domains and/or cytoplasmic domains, preferably less than 0.5%of such domains.
  • the precise boundaries of the transmembrane domain may vary, preferably, the extracellular domain of the CD79b polypeptide may comprise about 5 or less than 5 amino acids of either side of the transmembrane domain/extracellular domain boundary identified in the Examples or the specification.
  • the amino acid sequence of the CD79b ECD described herein is set forth in SEQ ID NO: 35.
  • antibody includes monoclonal antibodies (including full length antibodies having immunoglobulin Fc regions) , antibody compositions having multi-epitope specificities, multispecific antibodies (e.g., bispecific antibodies) , diabody and single chain molecules, as well as antibody fragments (e.g., Fab, F (ab') 2, and Fv) .
  • antibody fragments e.g., Fab, F (ab') 2, and Fv.
  • immunoglobulin Ig
  • antibody can be used interchangeably.
  • CD79b antibody refers to an antibody that is capable of binding CD79b with sufficient affinity.
  • the CD79b antibody binds to irrelevant non-CD79b proteins to a degree less than about 10%of the binding of the antibody to CD79b, as measured, for example, by radioimmunoassay (RIA) .
  • the antibody that binds to CD79b has a dissociation constant (Kd) of ⁇ 10 nM, ⁇ 1 nM, or ⁇ 0.1 nM.
  • Kd dissociation constant
  • the anti-CD79b antibody binds to a CD79b epitope that is conserved among CD79bs from different species.
  • variable region or “variable domain” of an antibody refers to the amino terminal domain of the heavy or light chain of an antibody.
  • the variable domains of the heavy and light chains can be referred to as “VH” and “VL” , respectively. These domains are typically the most variable parts of the antibody (relative to other antibodies of the same type) and contain antigen binding sites.
  • variable refers to the situation where certain segments of the variable domains differ widely in antibody sequences.
  • a variable domain mediates antigen binding and defines the specificity of a particular antibody to its particular antigen.
  • variability is not evenly distributed across the 110 amino acids spanning the variable domain.
  • the variable region consists of relatively invariant segments of 15-30 amino acids in length called the framework regions (FRs) and extremely variable shorter regions of the lengths of 9-12 amino acids each that separate the framework regions called “highly variable regions (HVRs) ” .
  • the variable domains of the native heavy and light chains each comprise four FR regions, most of which adopt a beta-sheet conformation.
  • Monoclonal antibodies indicates that the antibodies are obtained from a substantially homogeneous population of antibodies and should not be construed as requiring any particular method for the production of the antibody.
  • monoclonal antibodies to be used herein can be produced by a variety of techniques including, for example, hybridoma methods (e.g., Kohler and Milstein, Nature, 256: 495-97 (1975) ) , DNA recombination (e.g., U.S. Patent No.
  • an “antibody fragment” comprises a portion of an intact antibody, preferably comprising an antigen binding region and/or a variable region of an intact antibody.
  • antibody fragments include Fab, Fab', F (ab') 2 and Fv fragments; diabodies; linear antibodies (see U.S. Patent 5,641,870) ; single chain antibody (scFv) molecules; and multispecific antibodies formed by antibody fragments. Digestion of the antibody with papain produces two identical antigen-binding fragments called “Fab” fragments, and a residual "Fc” fragment.
  • the Fab fragment consists of the entire light and heavy chain variable domains (VHs) and one heavy chain first constant domain (CH1) .
  • a conjugate of an intact antibody can include an antibody conjugate in which all K447 residues are eliminated, an antibody conjugate without any K447 residue eliminated, or mixed antibody conjugates with a K447 residue or without K447 residue.
  • a "functional Fc region” possesses an effector function of the native sequence Fc region. Exemplary effector functions include C1q binding, CDC, Fc receptor binding, ADCC, phagocytosis, downregulation of cell surface receptors (e.g., B cell receptors) , and the like.
  • a "native sequence Fc region” comprises an amino acid sequence identical to the amino acid sequence of an Fc region found in nature.
  • the native sequence human Fc region comprises the native sequence human IgGl Fc region; the native sequence human IgG2 Fc region; the native sequence human IgG3 Fc region; and the native sequence human IgG4 Fc region; and naturally occurring variants thereof.
  • a "variant Fc region” comprises an amino acid sequence that differs from a native sequence Fc region by at least one amino acid modification, preferably one or more amino acid substitutions.
  • the variant Fc region has at least one amino acid substitution compared to the native sequence Fc region or to the Fc region of the parent polypeptide, e.g., having in the native sequence Fc region or in the Fc region of the parent polypeptide from about 1 to about 10 amino acid substitutions, preferably from about 1 to about 5 amino acid substitutions.
  • the variant Fc regions preferably have at least about 80%homology to the native sequence Fc region and/or the Fc region of the parent polypeptide, most preferably at least about 90%homology to them, more preferably at least about 95%homology to them.
  • Diabody refers to an antibody fragment having two antigen binding sites, which comprises a heavy chain variable domain (V H ) and a light chain variable domain (V L ) linked in the same polypeptide chain (V H -V L ) .
  • Small antibody fragments are prepared by constructing a scFv fragment using a short linker (about 5-10 residues) between the V H and V L domains, and because of the short linker, the variable domains are subjected to pairing between rather than inside the chains. This results in a bivalent fragment, a fragment having two antigen binding sites.
  • Diabodies can be bivalent or bispecific.
  • a bispecific diabody is a heterodimer of two "crossover" scFv fragments in which the VH and VL domains of both antibodies are present on different polypeptide chains.
  • a “functional fragment” or "antigen-binding fragment” of an antibody described herein includes a portion of an intact antibody, typically including the antigen binding or variable region of the intact antibody, or Fc region of the antibody retaining or having altered FcR binding ability.
  • functional fragments of the antibody include linear antibodies, single-chain antibodies (scFv) , and multispecific antibodies formed by antibody fragments, especially Fv, scFv, Fab, F (ab') 2, Fab', scFv-Fc fragments or diabodies, or any fragment that is capable of increasing half-life by chemical modification or by incorporation into liposomes.
  • the chemical modification includes the addition of poly (alkylene) glycols such as polyethylene glycol, i.e., PEGylation modification (referred to as Fv-PEG, scFv-PEG, Fab-PEG, F (ab') 2-PEG or a PEGylated fragment of Fab'-PEG) with CD79b binding activity.
  • poly (alkylene) glycols such as polyethylene glycol, i.e., PEGylation modification (referred to as Fv-PEG, scFv-PEG, Fab-PEG, F (ab') 2-PEG or a PEGylated fragment of Fab'-PEG) with CD79b binding activity.
  • a functional fragment of the antibody described herein consists of or comprises a partial sequence of a heavy chain variable region or a light chain variable region of the antibody from which it is derived, the partial sequence being sufficient to retain the same binding specificity and full affinity as the antibody from which it is derived.
  • Such functional fragments will comprise a minimum of 5 amino acids, preferably 10, 15, 25, 50 and 100 contiguous amino acids of the antibody sequence from which they are derived.
  • Monoclonal antibodies include "chimeric" antibodies (immunoglobulins) herein.
  • a portion of a heavy chain and/or a light chain is identical or homologous to a corresponding sequence of the antibody derived from a particular species or belonging to a particular antibody class or subclass, and another portion is identical or homologous to a corresponding sequence of another antibody derived from another particular species or belonging to another particular antibody class or subclass.
  • a humanized antibody may comprise residues that are not found in the recipient antibody or in the donor antibody. These modifications are made to further improve the performance of the antibody.
  • a humanized antibody will comprise at least one, typically two, substantially entire variable domain, wherein all or substantially all of the hypervariable loops correspond to the hypervariable loops of a non-human immunoglobulin, and all or substantially all FRs are the FR of human immunoglobulin sequences.
  • the humanized antibody optionally will also comprise at least a portion of the immunoglobulin constant region (Fc) , typically a constant region of a human immunoglobulin.
  • Fc immunoglobulin constant region
  • Humanized antibodies can be obtained from mouse-derived antibodies produced by immunizing mice via computer simulation design in combination of phage display technology.
  • Binding affinity generally refers to the strength of the sum of all non-covalent interactions between a single binding site of a molecule (e.g., an antibody) and its binding partner (e.g., an antigen) .
  • binding affinity refers to the intrinsic binding affinity that reflects a 1: 1 interaction between a member of a binding pair (e.g., an antibody and an antigen) , unless otherwise indicated.
  • the affinity of the molecule X for its partner Y can be generally expressed by the dissociation constant (Kd) .
  • Kd dissociation constant
  • Low-affinity antibodies typically bind to antigen slowly and tend to dissociate easily, while high-affinity antibodies generally bind antigen much more rapidly and tend to maintain longer binding. Affinity can be measured by common methods known in the art, including radiolabeled antigen binding assays (RIA) .
  • Control sequence refers to a DNA sequence necessary for expression of an operably linked coding sequence in a particular host organism.
  • control sequences suitable for prokaryotes include a promoter, an optional operator sequence, and a ribosome binding site.
  • Eukaryotic cells are known to utilize promoters, polyadenylation signals, and enhancers.
  • a nucleic acid is "operably linked” if it is in a functional relationship with another nucleic acid sequence.
  • the leader sequence or secretory leader DNA is expressed as a pro-protein involved in the secretion of the polypeptide, it is operably linked to the DNA of the polypeptide; if the promoter or enhancer affects the transcription of the coding sequence, it is operably linked to the sequence; or, if the position of the ribosome binding site facilitates translation, it is operably linked to the coding sequence.
  • “operably linked” means that the linked DNA sequences are adjacent, and, in the case of a secretory leader, it means adjacent and in a readable state. However, enhancers do not have to be adjacent. The ligation can be achieved by connection at a convenient restriction site. In the absence of such sites, synthetic oligonucleotide adaptors or linkers are used in accordance with conventional practice.
  • vectors e.g., non-episomal mammalian vectors
  • vectors can be integrated into the genome of the host cell upon introduction into the host cell, thereby replicating along with the host genome.
  • certain vectors are capable of directing the expression of genes to which they are operably linked.
  • Such vectors are referred to herein as “recombinant expression vectors” (or simply “recombinant vectors” ) .
  • expression vectors useful in recombinant DNA techniques are often in the form of plasmids.
  • plasmid and vector are used interchangeably as the plasmid is the most common form of vector.
  • Oligonucleotide generally refers to a short polynucleotide, typically single stranded, synthetic, of a length generally but not necessarily less than about 200 nucleotides.
  • hematopoietic system includes thymus and bone marrow and peripheral lymphoid tissues such as the spleen, lymph nodes, lymphoid tissues associated with the mucosa, such as intestinal-associated lymphoid tissue, tonsils, Peyer's patches, and other mucosa-related attachments and lymphoid tissues, such as the bronchial lining.
  • lymphoma leukemia, myeloma or lymphoid malignancies, as well as cancers of the spleen and cancers of the lymph nodes.
  • B-cell-associated cancers including, for example, advanced, intermediate, and low-grade lymphomas, including B-cell lymphomas, such as mucosa-associated lymphoid tissue B-cell lymphomas and non-Hodgkin's lymphoma (NHL) , mantle cell lymphoma, Burkitt's lymphoma, small lymphocytic lymphoma, marginal lymphoma, diffuse large cell lymphoma, follicular lymphoma, and Hodgkin's lymphoma and T-cell lymphoma; and leukemia, including secondary leukemia, chronic lymphocytic leukemia (CLL) such as B-cell leukemia (CD5+ B lymphocytes) , myeloid leukemia such as acute myeloid leukemia, chronic myeloid leukemia, lymphoid leukemia such as acute lymphocytic leukemia (ALL) and
  • B-cell lymphomas such as mucosa-associated lymphoid tissue B
  • cancerous B cell proliferative disorder selected from the group consisting of non-Hodgkin's lymphoma (NHL) , aggressive NHL, recurrent aggressive NHL, recurrent painless NHL, refractory NHL, refractory painless NHL, chronic lymphocytic leukemia (CLL) , small lymphocytic lymphoma, hairy cell leukemia (HCL) , acute lymphoblastic leukemia (ALL) , and mantle cell lymphoma.
  • NHL non-Hodgkin's lymphoma
  • aggressive NHL recurrent aggressive NHL
  • recurrent painless NHL recurrent painless NHL
  • refractory NHL refractory painless NHL
  • CLL chronic lymphocytic leukemia
  • small lymphocytic lymphoma small lymphocytic lymphoma
  • hairy cell leukemia HCL
  • ALL acute lymphoblastic leukemia
  • mantle cell lymphoma mantle cell lymphoma
  • cancer also includes cancer, blastoma, and sarcoma.
  • other examples of cancer include squamous cell carcinoma, small cell lung cancer, non-small cell lung cancer, lung adenocarcinoma, lung squamous cell carcinoma, peritoneal cancer, hepatocellular carcinoma, gastrointestinal cancer, pancreatic cancer, glioma, cervic cancer, ovarian cancer, liver cancer, bladder cancer, hepatosarcoma, breast cancer, colon cancer, colorectal cancer, endometrial cancer or uterine cancer, salivary gland cancer, kidney cancer, prostate cancer, vulvar cancer, thyroid cancer and various types of head and neck cancers, etc.
  • Treatment refers to the alleviation (reduction) or cure of the pathological condition or disorder directed to. If a patient exhibits an observable and/or measurable decrease or disappearance in one or more of the following after receiving a therapeutic amount of an anti-CD79b antibody according to the method described herein, the subject successfully "treats" the tumors (especially cancer) expressing CD79b polypeptide: reduced number of tumor cells or disappearance of tumor cells; reduced tumor volume; inhibition of tumor cell infiltration; inhibition of tumor metastasis; inhibition of tumor growth to a certain extent; and/or the allevation of one or more symptoms associated with specific tumors to a certain extent; reduction in morbidity and mortality; and the improvement of life quality.
  • the anti-CD79b antibody prevents tumor cell growth and/or kills existing tumor cells, it may suppress cells and/or poison cells. The alleviation of these signs or symptoms can also be felt by the patient.
  • “Therapeutically effective amount” means a dose sufficient to indicate its benefit to the subject to which it is administered.
  • the actual amount administered, as well as the rate and time course of administration will depend on the condition and severity of the subject being treated.
  • the prescription for treatment e.g., the determination of the dose, etc.
  • the prescription for treatment is ultimately the responsibility of the GP and other physicians and relies on them to make decisions, usually considering the disease being treated, the condition of the individual patient, the site of delivery, the method of administration, and the other factors known to the physicians.
  • the therapeutically effective amount of the drug can reduce the number of tumor cells; reduce the tumor volume; inhibit the infiltration of cancer cells into surrounding organs; inhibit tumor metastasis; inhibit tumor growth to a certain extent; and/or reduce one or more symptoms related to tumors to some extent.
  • prophylactically effective amount it is meant an amount effective to achieve the desired prophylactic effect at the necessary dose and time. Usually, but not necessarily, since the prophylactic dose is administered to the subject prior to the onset of the disease or early in the disease, the prophylactically effective amount will be less than the therapeutically effective amount.
  • the “growth inhibiting amount” of an anti-CD79b antibody refers to an amount capable of inhibiting the growth of cells, particularly tumors, such as cancer cells, in vitro or in vivo.
  • the “growth inhibition amount” of the anti-CD79b antibody in order to inhibit neoplastic cell growth can be determined empirically and in a conventional manner.
  • the "cytotoxic amount” of an anti-CD79b antibody refers to an amount capable of causing destruction of cells, particularly tumor cells, such as cancer cells, in vitro or in vivo.
  • the "cytotoxic amount” of the anti-CD79b antibody in order to inhibit neoplastic cell growth can be determined empirically and in a conventional manner.
  • vertebrate refers to a vertebrate.
  • the vertebrate is a mammal.
  • Mammals include, but are not limited to, livestock (such as cattle) , sports animals, pets (such as cats, dogs, and horses) , primates, mice, and rats.
  • livestock such as cattle
  • sports animals such as cats, dogs, and horses
  • primates such as mice
  • rats primates
  • mice such as mice
  • rats preferably, the mammal refers to a human.
  • sequence identity of a reference polypeptide sequence, it is defined as when aligning the sequence and introducing gap if necessary to obtain maximum percent sequence identity, and without considering any conservative substitution as part of sequence identity, the percentage of amino acid residues in the candidate sequence identical to the amino acid residues in the reference polypeptide sequence. Comparisons for the purpose of determining percent amino acid sequence identity can be carried out in a variety of ways within the skill of the art, for example using publicly available computer software such as BLAST, BLAST-2, ALIGN or Megalign (DNASTAR) software.
  • amino acid sequences with at least 80%, e.g., at least 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%or 100%sequence identity to the light chain variable region, heavy chain variable region or heavy chain and light chain of the antibody (especially the individual sequences specifically recited herein) as described herein.
  • mutations can be made in the anti-CD79b antibodies described herein, for example, using any of the techniques and guidelines for conservative and non-conservative mutations as described, for example, in U.S. Patent 5,364,934.
  • the variation does not occur within the CDRs set forth herein as SEQ ID NOs: 1-6.
  • the variation can be substitution, deletion or insertion of one or more codons encoding an antibody or polypeptide that results in a change in the amino acid sequence relative to the native sequence antibody.
  • the variation is the substitution of at least one amino acid in one or more domains of the anti-CD79b antibody by any other amino acid.
  • Amino acid substitutions can be the result of replacing one amino acid with another amino acid having similar structural and/or chemical properties, such as replacing leucine with serine, i.e., conservative amino acid substitution. Insertions or deletions may optionally be in the range of from about 1 to 5 amino acids. A tolerable variation can be determined by systematically performing amino acid insertions, substitutions or deletions in the sequence and testing the resulting variants for activity exhibited by full length or mature native sequences.
  • Variation can be performed using methods known in the art, such as oligonucleotide-mediated (site-directed) mutagenesis, alanine scanning, and PCR mutagenesis.
  • the cloned DNA can be subjected to site-directed mutagenesis, cassette mutagenesis, restriction selective mutagenesis or other known techniques to produce anti-CD79b antibody variant DNA.
  • cysteine residue that is not involved in maintaining the correct conformation of the anti-CD79b antibody can also be substituted, usually by serine, to improve the oxidative stability of the molecule and prevent aberrant crosslinking.
  • cysteine bonding can be added to an anti-CD79b antibody to improve its stability (especially when the antibody is an antibody fragment such as an Fv fragment) .
  • a surrogate variant involves substitution of one or more hypervariable region residues of the parent antibody (e.g., humanized or human antibodies) .
  • the resulting variants selected for further development will have improved biological properties relative to the parent antibody from which they are produced.
  • a convenient method of generating such surrogate variants involves affinity maturation using phage display. Briefly, several hypervariable region sites (e.g., 6-7 sites) are mutated to produce all possible amino acid substitutions at each site.
  • the antibody variants thus generated are displayed in a monovalent form on the filamentous phage particles as a fusion with the M13 gene III product packaged within each particle. Phage display variants are then screened for biological activity (e.g., binding affinity) .
  • alanine scanning mutagenesis can be performed to identify hypervariable region residues that have important contributions to antigen binding.
  • the crystal structure of the antigen-antibody complex is analyzed to identify the point of contact between the antibody and the CD79b polypeptide.
  • Such contact residues and adjacent residues are candidate sites that are substituted in accordance with the techniques detailed herein.
  • radioisotopes such as radioactive isotopes of At 211 , I 131 , I 125 , Y 90 , Re 186 , Re 188 , Sm 153 , Bi 212 , P 32 and Lu; chemotherapeutic agents such as methotrexate, adriamycin, vinca alkaloids (Such as vincristine, vinblastine, etoposide) , doxorubicin, melphalan, mitomycin C, chlorambucil or daunorubicin; enzymes and fragments thereof, such as lysozyme; antibiotics; and toxins, such as small molecule toxins or enzymatic active toxins of bacterial, fungal, plant or animal origin, including fragments and/or variants thereof; and antitumor or anticancer drugs well known in the art.
  • chemotherapeutic agents such as methotrexate, adriamycin, vinca alkaloids (Such as vincristine,
  • “Pharmaceutical composition” means a combination of at least one drug and, optionally, a pharmaceutically acceptable carrier or excipient that are combined together to achieve a particular purpose.
  • the pharmaceutical compositions include combinations that are separated in time and/or space, as long as they are capable of acting together to achieve the objectives of the present invention.
  • the components contained in the pharmaceutical composition e.g., antibodies, nucleic acid molecules, nucleic acid molecule combinations, and/or conjugates described herein
  • the components contained in the pharmaceutical composition can be administered to the subject as a whole or separately.
  • the components contained in the pharmaceutical composition are separately administered to a subject, the components may be administered to the subject simultaneously or sequentially.
  • composition described herein may be administered by any suitable route, for example, orally, nasally, intradermally, subcutaneously, intramuscularly or intravenously.
  • the antibodies herein are antibodies that specifically bind to the use of CD79b in the treatment of tumors, and may be monoclonal antibodies, antibody fragments (including Fab, Fab', F (ab') 2 and Fv fragments) , diabodies, single domain antibodies, chimeric antibodies, humanized antibodies, single chain antibodies or antibodies that competitively inhibit the binding of an anti-CD79b polypeptide antibody to its corresponding antigenic epitope.
  • the antibodies described herein may optionally be conjugated to a cytotoxic agent, such as a toxin, including, for example, auristatin, maytansinoids, dolastatin derivatives or calicheamicin, antibiotics, radioisotopes, lysozymes, and the like.
  • the antibodies described herein may optionally be produced in CHO cells or bacterial cells, and preferably induce cell death to the cells bound thereto. For detection purposes, the antibodies described herein may be detectably labeled and attached to a solid support.
  • the heavy chain variable region of an anti-CD79b antibody herein comprises the amino acid sequence set forth in SEQ ID NOs: 1-3, and the light chain variable region comprises the amino acid sequence set forth in SEQ ID NOs: 4-6.
  • the anti-CD79b antibody herein comprises: HCDR1 comprising the amino acid sequence set forth in SEQ ID NO: 1; HCDR2 comprising the amino acid sequence set forth in SEQ ID NO: 2; HCDR3 comprising the amino acid sequence forth in SEQ ID NO: 3; LCDR1 comprising the amino acid sequence set forth in SEQ ID NO: 4; LCDR2 comprising the amino acid sequence set forth in SEQ ID NO: 5; and LCDR3 comprising amino acid sequence set forth in SEQ ID NO: 6.
  • the anti-CD79b antibody herein comprises the CDR sequences set forth in SEQ ID NOs: 1-6.
  • the antibody herein is murine antibody 104E1
  • the amino acid sequence of the heavy chain variable region thereof can be as set forth in SEQ ID NO: 7
  • the amino acid sequence of its light chain variable region can be as set forth in SEQ ID NO: 8.
  • the antibody herein is a humanized antibody, wherein at least one, at least two, at least three, at least four, at least five or all six of SEQ ID NOs: 1-6 are used to replace the corresponding CDR regions in the heavy chain variable region and/or the light chain variable region of human antibody.
  • the amino acid sequence used to prepare the heavy chain variable region of the humanized antibody is set forth in SEQ ID NO: 9, and the amino acid sequence used to prepare the light chain variable region of the humanized antibody is as set forth in SEQ. ID NO: 10.
  • the amino acid sequence of the heavy chain variable region of the humanized antibody described herein is set forth in SEQ ID NO: 11, and/or the amino acid sequence of the light chain variable region of the humanized antibody is as SEQ ID NO: 12.
  • PDC database is searched for a crystal structure similar in homology to the murine antibody 104E1 described herein.
  • the scFv crystal structure of the anti-polysialic acid antibody Ab735 was found, which has a homology of 77%with the 104E1 antibody sequence and has a sufficiently high resolution.
  • the two sequences were compared to establish a homology model of the 3WBD scFvs of the 104E1 antibody.
  • the amino acid sequence of the heavy chain variable region of the anti-CD79b antibody described herein can be selected from the amino acid sequences set forth in any one of SEQ ID NOs: 13-17, and/or the amino acid sequence of the light chain variable region thereof can be selected from the amino acid sequences set forth in any of SEQ ID NOs: 18-22.
  • the present invention also includes heavy chain variable region sequences having at least 90%, preferably at least 95%sequence identity to the heavy chain variable regions, and light chain variable region sequences having at least 90%, preferably at least 95%sequence identity to the light chain variable regions.
  • mutations in the heavy chain variable region and the light chain variable region occur within the FR and not in the CDRs.
  • the antibodies described herein may also contain a constant region.
  • the constant region can be the constant region of human IgM, IgD, IgG, IgA, and IgE.
  • the constant region can be the constant region of human IgG1, IgG2, IgG3, IgG4, IgAl or IgA2.
  • the heavy chain of an anti-CD79b antibody described herein comprises a heavy chain variable region and a heavy chain Fc region as described herein
  • the light chain comprises a light chain variable region and a light chain Fc region as described herein.
  • a heavy chain Fc region suitable for use in the invention further comprises a heavy chain Fc region having at least 90%, preferably at least 95%sequence identity to the amino acid sequence as set forth in SEQ ID NO: 23, and/or the light chain Fc region suitable for use herein further comprises a light chain Fc region having at least 90%, preferably at least 95%sequence identity to the amino acid sequence as set forth in SEQ ID NO: 24.
  • mutations known in the art that alter the effector function of the Fc region can occur in the heavy and/or light chain Fc regions.
  • an Fc region with reduced effector function has a substitution mutation in one or more of residues 238, 265, 269, 270, 297, 327, and 329 (see US 6,737,056) .
  • One or more amino acid substitutions with improved ADCC may occur at residues 298, 333 and/or 334 of the Fc region (residues are numbered by EU numbering) .
  • the amino acid sequence of the heavy chain of an anti-CD79b antibody described herein can be selected from amino acid sequences having at least 90%, preferably 95%sequence identity with the amino acid sequence set forth in any one of SEQ ID NOs: 25, 27, 29, 31, and 33, and/or the amino acid sequence of its light chain can be selected from at least 90%, preferably 95%sequence identity with the amino acid sequence set forth in any one of SEQ ID NOs: 26, 28, 30, 32 and 34.
  • an anti-CD79b antibody herein is selected from the group consisting of: (1) the antibody of which the amino acid sequence of the heavy chain is set forth in SEQ ID NO: 25, and the amino acid sequence of the light chain is set forth in SEQ ID NO: 26; (2) the antibody of which the amino acid sequence of the heavy chain is set forth in SEQ ID NO: 27, and the amino acid sequence of the light chain is set forth in SEQ ID NO: 28; (3) the antibody of which the amino acid sequence of the heavy chain is set forth in SEQ ID NO: 29 and the amino acid sequence of the light chain and the light chain is as shown in SEQ ID NO: 30; (4) the antibody of which the amino acid sequence of the heavy chain is set forth in SEQ ID NO: 31, and the amino acid sequence of the light chain is set forth in SEQ ID NO: 32; and (5) the antibody of which the amino acid sequence of the heavy chain is set forth in SEQ ID NO: 33, and the amino acid sequence of the light chain is set forth in SEQ ID NO: 34.
  • coding sequences for CDRs are set forth in SEQ ID NOs: 36, 37, 38 and 39, which are the coding sequences of SEQ ID NOS: 33, 34, 7 and 8, respectively.
  • Standard recombinant techniques can be used to obtain polynucleotide sequences encoding the antibodies or functional fragments thereof described herein.
  • the desired polynucleotide sequence can be isolated from antibody producing cells such as hybridoma cells and be sequenced.
  • the polynucleotide can be synthesized using a nucleotide synthesizer or PCR technique.
  • the sequence encoding the polypeptide is inserted into a recombinant vector capable of replicating in a prokaryotic host and expressing the heterologous polynucleotide.
  • a variety of vectors available and known in the art can be used.
  • a suitable vector will depend primarily on the size of the nucleic acid to be inserted into the vector and the particular host cell into which the vector will be transformed. Each vector contains a variety of building blocks depending on its function (amplification or expression of the heterologous polynucleotide, or both) and its compatibility with the particular host cell in which it resides.
  • the vector may be in the form of, for example, a plasmid, a cosmid, a viral particle or a bacteriophage.
  • Suitable nucleic acid sequence can be inserted into the vector by a variety of methods.
  • the DNA sequence of interest is inserted into a suitable restriction endonuclease site using techniques known in the art.
  • Vector components typically include, but are not limited to, one or more of the following: a signal sequence, a replication origin, one or more marker genes, an enhancer element, a promoter, and a transcription termination sequence. Suitable carriers comprising one or more of these components can be constructed using standard ligation techniques known to the skilled artisan.
  • the vector may be a cloning vector or an expression vector.
  • CD79b can be produced not only directly by recombination, but also as a fusion polypeptide with a heterologous polypeptide, which can be a signal sequence or other polypeptide having a specific cleavage site at the N-terminus of the mature protein or polypeptide.
  • a heterologous polypeptide which can be a signal sequence or other polypeptide having a specific cleavage site at the N-terminus of the mature protein or polypeptide.
  • the signal sequence can be a component of the vector, or it can be part of the DNA encoding the anti-CD79b antibody inserted into the vector.
  • the signal sequence may be a prokaryotic signal sequence selected from, for example, alkaline phosphatase, penicillinase, lpp or a thermostable enterotoxin II leader sequence.
  • the signal sequence may be, for example, a yeast invertase leader sequence, an alpha factor leader sequence (including the ⁇ -factor leader sequence of Saccharomyces cerevisiae and Kluyveromyces) or an acid phosphatase leader sequence, Candida albicans glucoamylase leader sequence, etc.
  • mammalian signal sequences can be used to direct protein secretion, such as signal sequences from secreted polypeptides of the same or related species, as well as viral secretion leader sequences.
  • mammalian expression vectors do not require the replication origin component.
  • the SV40 origin can usually be used simply because it contains an early promoter.
  • Expression and cloning vectors will typically contain a selection gene, also referred to as a selection marker.
  • a typical selection gene encodes a protein that: (a) confers resistance to an antibiotic or other toxin, such as ampicillin, neomycin, methotrexate or tetracycline; (b) complements auxotrophs; or (c) provides key nutrients not able to be obtained from a complex medium, such as a gene encoding a D-alanine racemase for Bacillus.
  • An example of a selection protocol utilizes drugs to block the growth of host cells. Those cells that have been successfully transformed by a heterologous gene produce a protein that confers drug resistance and are thus spared from the selection protocol. Examples of such dominant selection use the drugs neomycin, mycophenolic acid and hygromycin.
  • Expression and cloning vectors typically comprise a promoter operably linked to a nucleic acid sequence encoding an anti-CD79b antibody to direct mRNA synthesis. Promoters that are recognized by a variety of potential host cells are well known. Examples of promoter sequences suitable for use in yeast hosts include promoters of 3-phosphoglycerate kinase or other glycolytic enzymes such as enolase, glyceraldehyde-3-phosphate dehydrogenase, hexokinase, pyruvate decarboxylase phosphofructokinase, glucose-6-phosphate isomerase, 3-phosphoglycerate mutase, pyruvate kinase, triose phosphate isomerase, phosphoglucose isomerase, and glucokinase.
  • promoter sequences suitable for use in yeast hosts include promoters of 3-phosphoglycerate kinase or other glycolytic enzymes such as enolase, g
  • Enhancer sequence is a cis-acting element of DNA, usually about 10 to 300 bp, which acts on a promoter to increase transcription.
  • Many enhancer sequences from mammalian genes globin, elastase, albumin, alpha-fetoprotein, and insulin are known. However, enhancers from eukaryotic viruses are commonly used.
  • Examples include the enhancer on the late side of the SV40 replication origin (bp 100-270) , the cytomegalovirus early promoter enhancer, the enhancer on the late side of the origin of replication of polyomavirus, and adenovirus enhancers.
  • the enhancer can be spliced into the vector at the 5' or 3' position of the anti-CD79b antibody coding sequence, but is preferably located at the 5' position of the promoter.
  • Expression vectors for use in eukaryotic host cells will also contain sequences necessary for termination of transcription and for stabilization of mRNA. Such sequences are typically obtained from the 5'end and the occasional 3'end of the eukaryotic or viral DNA or cDNA untranslated region. These regions comprise nucleotide segments transcribed into polyadenylated fragments in the untranslated portion of the mRNA encoding the anti-CD79b antibody.
  • One useful transcription termination member is the bovine growth hormone polyadenylation region.
  • Vectors containing the nucleic acid sequences described herein can be transferred into a host cell using methods well known in the art. Techniques suitable for transferring nucleic acids into host cells in vitro include the use of liposomes, electroporation, microinjection, cell fusion, DEAE-dextran, calcium phosphate precipitation, and the like.
  • the host cell can be a prokaryotic cell and a eukaryotic cell.
  • Suitable prokaryotes include, but are not limited to, archaea and eubacteria, such as Gram-negative or Gram-positive organisms, such as Enterobacteriaceae, such as E. coli.
  • Other suitable prokaryotic host cells include Enterobacter, Erwinia, Klebsiella, Proteus, Salmonella such as Salmonella typhimurium, Serratia such as Serratia marcescans, Shigella, and Bacillus such as B. subtilis and Bacillus licheniformis , Pseudomonas such as P. aeruginosa, Rhizobia, Vitreoscilla Paracoccus and Streptomyces.
  • Full length antibodies, antibody fragments, and antibody fusion proteins can be prepared in bacteria, particularly when glycosylation and Fc effector functions are not required, such as when a therapeutic antibody is conjugated to a cytotoxic agent (e.g., a toxin) and the immunoconjugate itself shows the efficacy of tumor cell destruction.
  • Full length antibodies have a longer half-life in the circulation. Preparation in E. coli is faster and more economical.
  • TIR translation initiation regions
  • the antibody is isolated from the E. coli cell paste in a soluble fraction and can be purified, for example, by protein A or G column based on its isotype. Final purification can be carried out using methods similar to those used for purifying antibodies expressed, for example, in CHO cells.
  • Eukaryotic microorganisms such as filamentous fungi or yeast, are also suitable cloning or expression hosts for vectors encoding anti-CD79b antibodies.
  • Saccharomyces cerevisiae is a commonly used lower eukaryotic host microorganism. Others include Schizosaccharomyces cerevisiae, Kluyveromyces, and the like.
  • Host cells suitable for expression of a glycosylated anti-CD79b antibody are derived from a multicellular organism.
  • invertebrate cells include insect cells such as Drosophila S2 and Noctuidae Sf9, and cell cultures of plant cells such as cotton, corn, potato, soybean, petunia, tomato, tobacco.
  • a number of baculovirus strains and variants and corresponding permissible insect host cells have been identified which are derived from hosts such as Spodoptera frugiperda, Aedes aegypti, Aedes albopictus, Drosophila melanogaster and Bombyx mori.
  • Examples of useful mammalian host cell lines are the monkey kidney CV1 line (COS-7, ATCC CRL1651) transformed with SV40, human embryonic kidney line (293 or 293 cells subcloned for growth in suspension culture) , baby hamster kidney Cells (BHK, ATCCCCL10) , Chinese hamster ovary cells/-DHFR (CHO) , mouse sertoli cells (TM4) , monkey kidney cells (CV1, ATCCCCL70) , African green monkey kidney cells (VERO-76, ATCCCRL-1587) , human cervical cancer cells (HELA, ATCCCCL2) , canine kidney cells (MDCK, ATCCCCL34) , buffalorat hepatocytes (BRL3A, ATCCCRL1442) , human lung cells (W138, ATCCCCL75) , human hepatocytes (HepG2, HB8065) , mouse breast tumor (MMT060562, ATCCCCL51) , TRI cells, MRC5 cells, FS4 cells,
  • Host cells for production of the anti-CD79b antibodies described herein can be cultured in a variety of media under culture conditions well known in the art.
  • the antibody composition prepared from the cells can be purified using, for example, hydroxyapatite chromatography, gel electrophoresis, dialysis, and affinity chromatography.
  • a preferred purification technique is affinity chromatography.
  • other protein purification techniques can also be used, such as fractionation on an ion exchange column, ethanol precipitation, reverse phase HPLC, chromatography on silica, chromatography on heparin SEPHAROSE TM , chromatography on anion or cation exchange resin (for example polyaspartic acid column) , chromatographic focusing, SDS-PAGE, and ammonium sulfate precipitation.
  • immunoconjugates or antibody-drug conjugates comprising an antibody conjugated to a cytotoxic agent, and methods of use and preparation thereof.
  • Cytotoxic agents suitable for use in the present invention may be drugs (e.g., chemotherapeutic drugs) , growth inhibitors, toxins (e.g., enzymatically active toxins or fragments thereof of bacterial, fungal, plant or animal origin) or radioisotopes (i.e., radioconjugates) .
  • the immunoconjugate comprises any of the above anti-CD79b antibodies covalently linked to a cytotoxic or detectable agent.
  • drug refers to any compound having desirable biological activity. Desirable biological activities include diagnosing, curing, alleviating, treating, preventing diseases in human or other animals.
  • drug refers to compounds that are recognized by official national pharmacopoeia, as well as, for example, the US Official Homeopathic Pharmacopoeia, the official National Formulary, or any of its supplements. Typical drugs are listed in the physician's desk medication reference (PDR) and the US Food and Drug Administration (FDA) Orange Book. As new drugs continue to be discovered and developed, these drugs should also be included in the drug-conjugated prodrugs described herein.
  • the drug has a reactive functional group so that it can be used to prepare a conjugate as described herein.
  • Exemplary drugs suitable for use herein include, but are not limited to, cytotoxic drugs for cancer treatment; proteins or polypeptides having desired biological activities, such as toxins, such as acacia toxin, ricin A, pseudomonas exotoxin and diphtheria toxin.
  • cytotoxic drugs for cancer treatment proteins or polypeptides having desired biological activities, such as toxins, such as acacia toxin, ricin A, pseudomonas exotoxin and diphtheria toxin.
  • PBDs pyrrolobenzodiazepines
  • PBD dimers such as:
  • the antibody can be coupled to the drug either directly or via a linker.
  • Linkers can be divided into two classes: non-cleavable linkers and cleavable linkers.
  • the drug release mechanism is: after the conjugate binds to the antigen and is internalized by the cell, the antibody is hydrolyzed in the lysosome, and the active molecule composed of small molecule drug, linker and amino acid residue of the antibody is released.
  • the resulting change in the molecular structure of the drug does not reduce its cytotoxicity, but since the active molecule is charged (amino acid residues) , it cannot infiltrate into adjacent cells.
  • a cleavable linker can cleave within the target cell and release the active drug.
  • Cleavable linkers can be divided into two main classes: chemically labile linkers and enzyme labile linkers. Chemically labile linkers can selectively cleave due to differences in plasma and cytoplasmic properties. Such properties include pH, glutathione concentration, and the like.
  • pH-sensitive linkers often referred to as acid-cleavable linkers, are relatively stable in the neutral environment of blood (pH 7.3-7.5) , but will be hydrolyzed in weakly acidic endosomes (pH 5.0-6.5) ) and lysosomes (pH 4.5-5.0) .
  • glutathione-sensitive linkers it is also called disulfide linker. Drug release is based on the difference between the high concentration (in millimolar range) of intracellular glutathione and the relatively low concentration of glutathione (in micromolar range) in the blood. This is especially true for tumor cells, wherein low oxygen levels result in enhanced reductase activity, thus resulting in higher glutathione concentrations.
  • Enzyme-labile linkers such as peptide linkers
  • Peptide linkers can be efficiently cleaved by proteases such as cathepsin B or plasmin (an increase in the amount of such enzymes in some tumor tissues) in lysosome. This peptide linkage is believed to be very stable in the plasma circulation because the extracellular pH and serum protease inhibitors cause proteases generally inactive.
  • enzyme-labile linkers are widely used as cleavable linkers for antibody-drug conjugates.
  • Typical enzyme labile linkers include Val-Cit (vc) , Phe-Lys, and the like.
  • Self-immolative linkers are typically integrated between the cleavable linker and the active drug, or are themselves part of a cleavable linker. The acting mechanism of the self-immolative linker is that when the cleavable linker is cleaved under suitable conditions, the suicide linker can spontaneously rearrange the structure and release the active drug linked thereto.
  • Common self-immolative linkers include p-aminobenzyl alcohols (PAB) and beta-glucuronides.
  • linker members include 6-maleimidocaproyl, maleimidopropionylproline-citrulline, alanine-phenylalanine, p-aminobenzyloxycarbonyl, N-succinimidyl 4- (2-pyridylthio) pentanoate, N-succinimidyl 4- (N-maleimidomethyl) cyclohexane-1 carboxylate and N-succinimidyl (4-iodo-acetyl) aminobenzoate.
  • exemplary linker members can further be linkers comprising an amino acid unit to allow protease cleavage, thereby facilitating the release of drug from the immunoconjugate after exposure to intracellular protease, such as a lysosomal enzyme.
  • exemplary amino acid units include, but are not limited to, dipeptides, tripeptides, tetrapeptides, and pentapeptides.
  • Exemplary dipeptides include: valine-citrulline; alanine-phenylalanine; phenylalanine-lysine; or N-methyl-valine-citrulline.
  • Exemplary tripeptides include: glycine-valine-citrulline and glycine-glycine-glycine-glycine.
  • An exemplary tridentate (or bismaleimide type) linker member can have the following structure:
  • An exemplary tetramaleimide type linker member can have the following structure:
  • an antibody-drug conjugate herein may have the following structure:
  • A is an antibody disclosed herein;
  • V-L is a linker; V may or may not be present, and may be any of the tridentate linker members or the tetramaleimide linker member as described above, and L is a cleavage linker or a non-cleavable linker, at least one of V and L is present; D is a cytotoxic agent of interest; n is an integer from 1 to 4.
  • Examples of exemplary antibody-drug conjugates herein can be found in the examples of the present application, including but not limited to AS11259-ADC-001, AS11259-ADC-002, AS11259-ADC-003, AS11259-ADC-004, AS11259-ADC-005, AS11259-ADC-006, AS11259-ADC-007, AS11259-ADC-008, AS11259-ADC-010, AS11259-ADC-011, and AS11250-ADC-0012.
  • the immunoconjugate can comprise a highly radioactive atom.
  • a variety of radioisotopes are available for the production of radioconjugated antibodies. Examples include the radioisotopes of At 211 , I 131 , I 125 , Y 90 , Re 186 , Re 188 , Sm 153 , Bi 212 , P 32 , Pb 212 , and Lu.
  • Radioactivity or other labels can be incorporated into the immunoconjugate in a known manner.
  • peptides can be biologically synthesized or synthesized by chemical amino acid synthesis using suitable amino acid precursors involving, for example, fluorine-19 in place of hydrogen.
  • Labels may be attached via cysteine residues in the peptide, such as Tc 99m or I 123 , Re 186 , Re 188 and In 111 .
  • the Y-90 can be attached via a lysine residue.
  • the antibodies, functional fragments thereof or antibody-drug conjugates thereof can be administered by any route appropriate to the condition to be treated, including oral, parenteral, subcutaneous, intramuscular, intravenous, intradermal, intrathecal and epidural.
  • the appropriate dose of the antibody, the functional fragment or antibody-drug conjugate thereof described herein (when used alone or in combination with one or more of other agents such as chemotherapeutic drugs) will depend on the type of disease, the type of antibody, its functional fragment or antibody-drug conjugate, the severity and progression of the disease, the administration of the antibody, its functional fragment or antibody-drug conjugate for prophylactic or therapeutic purposes, previous treatment, the patient's clinical history and response to antibodies, functional fragments or antibody-drug conjugates thereof, and the judgment of the attending physician.
  • the antibody, its functional fragment or antibody-drug conjugate is administered to the patient, either once or through a series of treatments.
  • the initial candidate dose administered to the patient may be from about 1 ⁇ g/kg to 100 mg/kg (e.g., 0.1 mg/kg to 20 mg/kg) of the antibody, the functional fragment or antibody-drug conjugate thereof, for example by one or more separate administrations or by continuous infusion.
  • Typical daily doses may range from about 1 ⁇ g/kg to 100 mg/kg or more, depending on the factors described above.
  • treatment is usually continued until the disease symptoms are desirably inhibited.
  • Exemplary dosages of antibodies, functional fragments thereof or antibody-drug conjugates can range from about 0.05 mg/kg to about 10 mg/kg.
  • nucleic acid transfer techniques include the transfection by the use of viral vectors (such as adenovirus, herpes simplex virus type I or adeno-associated virus) and lipid-based systems (lipids useful for lipid-mediated gene transfer are for example DOTMA, DOPE and DC-Chol) .
  • viral vectors such as adenovirus, herpes simplex virus type I or adeno-associated virus
  • lipid-based systems lipids useful for lipid-mediated gene transfer are for example DOTMA, DOPE and DC-Chol
  • a pharmaceutical composition comprising an anti-CD79b antibody or an anti-CD79b antibody-drug conjugate, as used herein, can be prepared into lyophilized dosage form or an aqueous solution for storage by mixing the antibody or antibody-drug conjugate of desired purity with an optional pharmaceutically acceptable carrier, excipient or stabilizer.
  • the acceptable carriers, excipients, or stabilizers are non-toxic to the recipient at the dosages and concentrations employed, and include buffers such as acetate, Tris, phosphate, citrate, and other organic acids; antioxidants, including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzylammonium chloride; chlorhexidine ammonium; benzalkonium chloride, benzethonium chloride; phenol, butanol or benzyl alcohol) ; Hydrocarbyl paraben, such as methylparaben or propylparaben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol) ; lower molecular weight (less than about 10 residues) polypeptide; protein, such as serum protein, gelatin or immunoglobulin; hydrophilic polymers, such as polyvinylpyrrolidone; amino acids such as glycine,
  • the anti-CD79b antibodies herein can be used to treat the tumor expressing CD79b in a mammal or alleviate one or more symptoms thereof.
  • tumors include, but are not limited to, cancers of the hematopoietic system or blood-related cancers, such as lymphomas, leukemias, myeloma or lymphoid malignancies, as well as cancers of the spleen and cancers of the lymph nodes.
  • Tumors expressing CD79b include particularly B cell-associated cancers, specific examples of which include, for example, advanced, intermediate, and lower-grade lymphomas (including B-cell lymphomas such as, for example, mucosa-associated lymphoid tissue B-cell lymphomas and non-Hodgkin's lymphomas, mantle cell lymphoma, Burkitt's lymphoma, small lymphocytic lymphoma, marginal zone lymphoma, diffuse large B-cell lymphoma, follicular lymphoma and Hodgkin's lymphoma and T-cell lymphoma) and leukemia (including secondary leukemia, chronic lymphocytic leukemia such as B cell leukemia (CD5 + B lymphocytes) , myeloid leukemia such as acute myeloid leukemia, chronic myeloid leukemia, lymphoid leukemia such as acute lymphocytic leukemia and myelodysplasia) .
  • Cancer encompasses any of the aforementioned metastatic cancers.
  • the antibody is capable of binding to at least a portion of tumor cells expressing a CD79b polypeptide in a mammal.
  • the antibody effectively disrupts or kills tumor cells expressing CD79b or inhibits the growth of such tumor cells when bound to the CD79b polypeptide on the cell in vitro or in vivo.
  • Such antibodies include naked anti-CD79b antibodies (not coupled to any agent) . Naked antibodies with cytotoxic or cytostatic properties can further cooperate with cytotoxic agents, making them more effective at destroying tumor cells.
  • the anti-CD79b antibody can be rendered cytotoxic by, for example, coupling the antibody to a cytotoxic agent to form an immunoconjugate as described herein.
  • the article comprises a container and a label or package insert on or associated with the container.
  • Suitable containers include, for example, bottles, vials, syringes, and the like.
  • the container can be made from a variety of materials such as glass or plastic.
  • the container contains a composition effective to treat, prevent and/or diagnose a tumor condition, and may have a sterile access port (e.g., the container may be an intravenous solution bag or vial having a stopper pierceable by a hypodermic needle) .
  • At least one active agent in the composition is an anti-CD79b antibody herein.
  • the label or package insert indicates that the composition is used to treat, prevent, and/or diagnose a tumor.
  • the label or package insert further includes instructions for administering the antibody composition to a patient with a tumor, particularly a cancer.
  • the article of manufacture may include a second container containing a pharmaceutically acceptable buffer such as bacteriostatic water for injection (BWFI) , phosphate buffered saline, Ringer's solution, and dextrose solution. It may also include other materials required by commercial and user standpoint, including other buffers, diluents, filters, needles, and syringes.
  • BWFI bacteriostatic water for injection
  • Kits are also provided that can be used for a variety of purposes, such as cytotoxic assays for cells expressing CD79b, for purifying or immunoprecipitating CD79b polypeptides from cells.
  • the kit can comprise an anti-CD79b antibody conjugated to beads (e.g., sepharose beads) .
  • Kits comprising antibodies can be provided for in vitro detection and quantification of CD79b polypeptides, such as in ELISA or Western blots.
  • the kit includes a container and a label or package insert on or associated with the container.
  • the container contains a composition comprising at least one of the anti-CD79b antibodies herein. Additional containers can be included in which are, for example, diluents and buffers, control antibodies.
  • the label or package insert can provide a description of the composition as well as instructions for intended in vitro or test use.
  • liquid chromatography-mass spectrometry method low-resolution mass spectrometry data was acquired on an Agilent 6110 (acid method) or 6120B (base method) mass spectrometer interfaced with an HP Agilent 1200 high performance liquid chromatography.
  • Method 1 Acidic high performance liquid chromatography was performed on a Waters Sunfire C18 reversed phase column (4.60x50 mm, 3.5 ⁇ m) with an eluting gradient of 5%-95%B phase (acetonitrile, containing 0.01%TFA) in phase A (aqueous phase, containing 0.01%TFA) in 1.4 min, with the flow rate at 2.0 mL/min, and the column temperature is 50°C;
  • Method 2 Acidic high performance liquid chromatography was performed on a Poroshell 120 EC-C18 reverse phase column (4.60x30 mm, 2.7 ⁇ m) .
  • the eluting gradient was 5%-95%B phase (acetonitrile, containing 0.01%TFA) in phase A (aqueous phase, containing 0.01%TFA) in 2 min, with the flow rate at 1.5 mL/min, and the column temperature is 50°C;
  • Method 3 Basic high performance liquid chromatography was performed on a Waters Xbridge C18 reverse phase column (4.60x50 mm, 3.5 ⁇ m) with an eluting gradient of 5%-95%B phase (acetonitrile) in phase A (aqueous phase, containing 10 mM ammonium bicarbonate) in 1.5min, with the flow rate at 2.0 mL/min, and the column temperature is 40 °C.
  • Preparation was performed by reverse phase-high performance liquid chromatography (prep-RP-HPLC) on a Gilson instrument using a Waters Sunfire C18 reversed phase column (250x19 mm, 10 ⁇ m) .
  • Method 4 Preparation by acidic method.
  • Mobile phase A: aqueous phase containing 0.1%TFA; B: ACN.
  • Flow rate 20 mL/min.
  • Method 5 Preparation by basic method.
  • Mobile phase A: aqueous phase containing 10 mM ammonium bicarbonate; B: ACN.
  • Flow rate 20 mL/min.
  • the affinity of the anti-CD79b antibody (including mouse serum, hybridoma supernatant or recombinantly expressed monoclonal antibody, etc. ) to the CD79b antigen was examined by enzyme-linked immunosorbent assay.
  • the experimental procedure was as follows: 96-well plates (Corning, CAT #9018) were coated with 100 ⁇ L/well of antigen (human CD79b-ECD, novoprotein, CA29) at 1 ⁇ g/mL in PBS (10 mM phosphate, 138 mM NaCl, pH 7.2) at 4 °C overnight, and then blocked with 250ul/well of blocking solution (PBS + 1%BSA (Sangon, CAT #A0332) ) for one to three hours at 25°C.
  • antigen human CD79b-ECD, novoprotein, CA29
  • Plates were washed 3 times with a washing solution (PBS + 0.05%Tween-20 (Sangon, CAT #TB0560) ) , and then incubated with 100 ⁇ L of anti-CD79b antibody in serial dilutions in blocking solution in duplicate wells at 25°C for 2 h. Plates were washed 3 times with washing solution and then incubated with 100 ⁇ L of 1: 10,000 the secondary antibody (anti-mouse IgG (Fc) -HRP, Sigma, CAT#A00168 or anti-human IgG F (ab') 2-HRP, Sigma, CAT#A0293) at 25°C for 1 h.
  • a washing solution PBS + 0.05%Tween-20 (Sangon, CAT #TB0560)
  • flow cytometry was used to detect the ability of anti-CD79b antibodies (including mouse serum, hybridoma antibodies, etc. ) to bind to the native CD79b extracellular domain on the surface of cancer cells in vitro.
  • Cancer cell beads positively or negatively expressing CD79b were purchased from DSMZ or ATCC, and cell surface CD79b was quantified using Cell Membrane Surface Receptor Quantitation Kit QIFIKIT (DAKO, K0078) . The results are as follows:
  • SU-DHL-4 cell line Specifically, the SU-DHL-4 cells in the logarithmic growth phase were collected, washed with PBS, and then dispensed into 1.5 ml EP tubes, at about 100,000 cells per tube. Diluted mouse serum or hybridoma supernatant was added at 100 ⁇ l/tube and incubated for 1 hour at 4 °C.
  • Alexa Fluor 488 goat anti-mouse IgG H+L formulated in PBS-2%BSA 1: 400 (Molecular probes, Cat#A11001) was added at 100 ⁇ l/tube, and then the solution was incubated at 4°C for 45 minutes in the dark. The cells were washed twice with PBS-2%BSA, and then resuspended in 500 ⁇ l PBS-2%BSA and analysed on flow cytometry Guava (Millipore, 8HT) . The binding strength of the antibody to the cell surface CD79b receptor was determined based on the fluorescence intensity (MFI value) .
  • MFI value fluorescence intensity
  • the antibodies were conjugated with different small molecule drugs using different linkers to prepare drug conjugates, and the specific coupling method is as follows:
  • Tris (2-carboxyethyl) phosphine hydrochloride (TCEP, 10 eq, stock solution at 10mM) was added to the antibody solution (20 mM sodium dihydrogen phosphate-disodium hydrogen phosphate buffer, 150 mM sodium chloride, pH 7.2) . The reaction solution was incubated for 2 hours in a 37°C thermostat water bath.
  • the reaction solution was cooled to about room temperature and replaced by ultrafiltration (Millipore Ultra, 50000 MWCO) or gel filtration into buffer (100 mM potassium dihydrogen phosphate-dipotassium hydrogen phosphate, 100 mM sodium chloride, 1 mM ethylene triamine pentaacetic acid, pH 7.0-8.0) or buffer (20 mM citric acid-trisodium citrate, 50 mM sodium chloride, 1 mM diethylenetriaminepentaacetic acid, pH 6.0) .
  • buffer 100 mM potassium dihydrogen phosphate-dipotassium hydrogen phosphate, 100 mM sodium chloride, 1 mM ethylene triamine pentaacetic acid, pH 7.0-8.0
  • buffer 20 mM citric acid-trisodium citrate, 50 mM sodium chloride, 1 mM diethylenetriaminepentaacetic acid, pH 6.0
  • Dimethyl sulfoxide and corresponding linker-drug compound (dimethyl sulfoxide stock solution, 3-10 equivalents relative to the antibody) were added, and the volume of dimethyl sulfoxide in the reaction solution was ensured to be about 10-15%.
  • the coupling reaction was carried out at 10°C for 0.5 hour.
  • Antibodies prepared by the above methods for drug conjugates include rat anti-mouse HB58 antibody ( HB-58TM) , anti-CD79b human-mouse chimeric antibody, and different variants after humanization, including other control antibodies mentioned herein.
  • the antibody is first bound to an antibody that has been conjugated to the linker and the small molecule of the toxin, and then co-incubated with the cancer cells, and the antibody drug conjugate bound thereto is brought into the cells to kill the cancer cells by endocytosis of the target antibody.
  • the endocytic properties of such indirectly reactive antibodies and the proliferation inhibitory effect on cancer cells are referred to as secondary ADC experiments.
  • the HB58 cell line ( HB-58TM) was purchased from ATCC.
  • the cell line was a hybridoma cell obtained by fusing rat B cells with P3X63Ag8.653 myeloma cells.
  • the secreted antibody can specifically binds to murine antibodies.
  • Sufficient HB58 antibody was obtained by purification of HB58 cell line culture medium.
  • Antibody drug conjugate HB58-ADC was prepared.
  • Human lymphoma cell BJAB was inoculated into 96-well cell culture plates (BD falcon, Cat#353072) at 1 ⁇ 10 5 cells/100 ul/well, and the medium was ATCC-modified RPMI1640 medium (Gibco, Cat#A10491) + 10%Fetal bovine serum (FBS) (Gibco, Cat#10099141) .
  • SPR surface plasmon resonance
  • the assay was performed on a Biacore T200 (GE) machine, and the antibody to be tested was diluted to 10 ug/ml with HBS-EP (GE, BR100826) buffer according to the instruction of Amine-Coupling Kit (GE, BR-1000-50) .
  • the antibody to be tested was immobilized on a CM5 chip (GE, BR-1006-68) at a fixing time of 300sec and a flow rate of 10 ul/min.
  • the mouse-derived anti-human CD79b monoclonal cell lines was obtained by mice immunization, spleen cell fusion and hybridoma screening method, which was entrusted to Nanjing Jinsui Biotechnology Co., Ltd. to complete.
  • the antigen used for immunization was recombinant human CD79b extracellular domain protein (Shanghai Novoprotein, Ltd., under product name of recombinant human CD79B, lot#CA29, the amino acid sequence shown as SEQ ID NO: 35) , and four mice species (Balb/C, C3H, SJL, C57BL/6, respectively) were chosen to immunize, six mice of each species.
  • the immunological adjuvant is a conventional Freund's adjuvant, and the dose of the primary immunization is 50 ug of antigen per mouse.
  • the immunization was boosted at intervals of two weeks with the dose reduced to 25 ug. From the first booster immunization, the serum of the mice was collected 7 days after each booster immunization. The titer was determined by ELISA (see the first point in the "Materials and Methods" for the method) .
  • FACS detection was performed on the serum of mice collected 7 days after the second booster immunization (see the second point of the "Materials and Methods" section) to see if it can bind to CD79b on the surface of SU-DHL4 cell line which showed positive expression of CD79b.
  • the binding titer of each mouse was simultaneously determined.
  • mice with the highest titer were selected for cell fusion (by electrofusion) , and the fusion efficiency was about 3,000 spleen B cells fused into one hybridoma cell. All fused cells were plated into 96-well plates, with 40 plates per fusion.
  • ELISA assay was performed one week later (see point 1 of the Materials and Methods section for the method) . The supernatant of positive clones in ELISA assay was collected for FACS detection (see point 2 of the Materials and Methods section for methods) . All the clones positive in FACS detection were subcloned.
  • Clones that could inhibit the proliferation of BJAB cancer cells, which showed positive expression of CD79b, in a secondary ADC assay were subjected to continuous subcloning until a stable monoclonal cell line was formed.
  • Hybridoma sequencing was done for the 18 monoclonal cell lines listed in Table 1 of Example 1, and then chimeric antibodies with a constant region of human IgG1 were recombinantly expressed and tested for their activity.
  • the genes of the heavy and light chain variable regions of the antibody were amplified by reverse transcription PCR, ligated into a vector, and the monoclonal antibody light and heavy chain sequences were sequenced.
  • the total RNA of each monoclonal cell strain was first extracted using an RNA purification kit (Qiagen, Cat#74104) .
  • the cDNA single strand, the Oligo-dT primers cDNA was then reverse transcribed using a cDNA synthesis kit (Invitrogen, Cat. No. 18080-051) .
  • the antibody light and heavy chain variable region sequences were synthesized by PCR, and the PCR product was cloned into the TA vector pMD-18T, and then sequenced.
  • the heavy/light chain variable region genes were ligated to the expression vector PTT5 containing the human IgG1 constant region sequence or the K-chain constant region sequence via these two pairs of restriction sites to construct the expression vectors for the chimeric antibodies. Recombinant antibodies were expressed by transient expression in 293F cells.
  • chimeric antibodies 35B5, 78B6, 85G11, 88B12, 104A2, and 104E1 were conjugated to BMP-vcMMAE (linker-drug 1) separately to prepare antibody drug conjugates (ADCs) .
  • ADCs antibody drug conjugates
  • Proliferation inhibition assay were performed on seven CD79b positively expressing lymphoma cell lines BJAB, Ramos, DoHH2, SU-DHL-4, U-698-M, Granta-519, WSU-DLCL2 and two CD79b negatively expressing lymphoma cell lines Raji and Jurkat.
  • the culture conditions of the cancer cells were all the same (see Section 3 of the Materials and Methods section) .
  • the cell plating density and initial concentration of ADC for different cancer cell lines are shown in Table 2 below.
  • Lymphoma strain Plating number (cell/well) ADC initial concentration (ng/ml) BJAB 10000 400 Ramos 40000 400 DoHH2 40000 400 SU-DHL-4 30000 400 U-698-M 20000 1000 Granta-519 50000 2000 WSU-DLCL2 20000 2000 Raji 40000 2000 Jurkat 20000 2000
  • the drug conjugates of the recombinant chimeric antibody expressed by the 104E1 can inhibit the proliferation of lymphoma cells Granta-519 and WSU-DLCL2 with relatively low CD79b expression levels significantly better than the other five antibodies. Therefore, 104E1 was selected for humanization.
  • sequence information of antibody 104E1 (based on the Kabat system) is as follows:
  • HCDR1 GNTFTSYGIN (SEQ ID NO: 1)
  • HCDR2 GEIFPRSGNIYYNEKFKG (SEQ ID NO: 2)
  • HCDR3 AKGGTGDFDY (SEQ ID NO: 3)
  • LCDR2 KVSFRLS (SEQ ID NO: 5)
  • LCDR3 FQGSHVPWT (SEQ ID NO: 6)
  • Nanjing GenScript Biotech Corp. was entrusted to humanize the sequence of 104E1.
  • the specific procedure is as follows: the heavy and light chain variable region sequences of the murine anti-CD79b monoclonal antibody 104E1 were compared in the human germline sequence database, and the human germline sequence IGHV1-69*02 with the highest homology to the 104E1 heavy chain variable region was found, with a homology of 64.3%. Also found was the human germline sequence IGKV2-30*02 with the highest homology to the 104E1 light chain variable region with a homology of 79.0%.
  • the CDR region sequences were replaced with the corresponding CDR region sequences of murine 104E1 to generate CDR-grafted humanized antibodies, and the sequences were as follows:
  • the amino acid sites in the murine FR regions that play an important role in antibody affinity a crystal structure with similar homology to the murine 104E1 antibody was searched in the PDB database.
  • the scFV crystal structure of the anti-polysialic antibody Ab735 was found to have a homology of 77%with the 104E1 antibody sequence, and with a sufficient high resolution.
  • the two sequences were aligned to establish a homology model of the 3WBD scFvs of the 104E1 antibody. According to this homology model, the amino acid sites surrounded by the CDR domain, or within to the CDR domains in FR domain of the 104E1 sequence were identified.
  • a total of 15 sites were found that may need to be reverse mutated in the heavy chain variable region, including A24T, RV67KA, S84R, T98K, K12A, S16A, V20L, A24T, R38K, M48I, V68A, I70L, Y95F, T98K and V113L and a total of 7 sites that may need to be reverse-mutated in the light chain variable region, including V3L, F41Y, RR50KL, FQ41YL, R51L, V88L and V109L were found.
  • Fab libraries were then constructed according to Genscript's standard protocol and screened by phage display platform. The sequences after humanization with an affinity of not less than the murine 104E1 antibody were screened and sequenced for sequence confirmation.
  • the light and heavy chain variable regions after humanization are as follows:
  • the light heavy chains after humanization and the IgG1 Fc segment were recombined to obtain the humanized anti-CD79b monoclonal antibody described herein.
  • the Fc sequences used are as follows:
  • Example 5 Assay for In Vitro Binding Activity of Anti-CD79b Humanized Antibody to Human CD79b Extracellular Domain and the Inhibitory Effect on the Proliferation of Lymphoma Cells of the Drug Conjugate thereof
  • the antibody drug conjugates of the humanized antibody were prepared and the corresponding proliferation inhibition effect on lymphoma cancer cells in vitro (see Example 3 for the method) are shown in Table 6.
  • the variant AS11259 was selected and the drug conjugates AS11259-ADCs were prepared according to the method described in Materials and Method 3, then the ability of the ADCs to regress tumors in multiple xenograft models, including Ramos, DoHH2, Granta519 and WSU-DLCL2 was examined.
  • the linker-drug 1 was prepared as described in WO 2014114207.
  • the linker-drug 2 was prepared as described in WO 2014114207.
  • N-tert-butoxycarbonylethylenediamine (710 mg, 4.43 mmol) and diisopropylethylamine (1.55 mL, 8.86 mmol) were dissolved in dichloromethane (10 mL) , and then chloroacetyl chloride (500 mg, 4.43 mmol) was added dropwise.
  • the reaction mixture was stirred at room temperature for 16 hours, and then diluted with methylene chloride and washed successively with saturated aqueous ammonium chloride, saturated aqueous ammonium hydrogen carbonate, water and saturated saline.
  • the organic phase was dried with anhydrous sodium sulfate, filtered and concentrated under reduced pressure to obtain the crude compound 11as a white solid.
  • linker-drug 10 was prepared as described in CN 201710691056. X.
  • Tris (2-carboxyethyl) phosphine hydrochloride (TCEP, 10 eq, stock concentration 10 mM) was added to a solution of antibody AS11259 (IgG1) (20 mM sodium dihydrogen phosphate-disodium hydrogen phosphate buffer, 150 mM sodium chloride, pH 7.2) . The reaction was incubated for 2 hours in a 37°C thermostat water bath.
  • the reaction solution was cooled to about room temperature, and then buffer-exchanged by ultrafiltration (Merck Millipore Ultra, 50000 MWCO) or gel filtration into buffer (100 mM potassium dihydrogen phosphate-dipotassium hydrogen phosphate, 100 mM sodium chloride, 1 mM Diethylenetriamine pentaacetic acid, pH 7.0-8.0) or buffer (20 mM citric acid-trisodium citrate, 50 mM sodium chloride, 1 mM diethylenetriaminepentaacetic acid, pH 6.0) , to which dimethyl sulfoxide and the linker-Drug 1 prepared as described in Example 1 (dimethyl sulfoxide stock solution, 3-10 equivalents relative to the antibody) were added, ensuring that the volume of dimethyl sulfoxide in the reaction solution was about 10-15%.
  • the conjugation reaction was carried out at 10°C for 0.5 hour.
  • the reaction solution was first subjected to ultrafiltration (Merck Millipore Ultra, 50000 MWCO) or gel filtration to remove the linker-drug 1-cysteine adduct and excess cysteine, and then the sample was buffer-exchanged into a storage buffer (20 mM sodium dihydrogen phosphate-dibasic sodium phosphate buffer, 150 mM sodium chloride, pH 7.2) .
  • the obtained solution was sterilized via a 0.22 ⁇ m pore size filter (Merck Millex-GV Filter) to obtain an antibody-drug conjugate AS11259-ADC-001, which was stored at 4°C.
  • antibody-drug conjugates of the present invention AS11259-ADC-002 to AS11259-ADC-011, were prepared according to the above preparation procedure, using linker-drug 2-10 to replace linker-drug 1, respectively.
  • the antibody-drug conjugate AS11259-ADC-0012 was obtained by conjugating the antibody AS11259 with the linker-drug 1, wherein the antibody was reduced via partial reduction mode, with an average of two pairs of disulfide bonds being reduced.
  • Table 6 shows a summary of the antibody drug conjugates prepared in this disclosure.
  • ADC Linker-drug Linker-drug e.q. (to antibody) AS11259-ADC-001 1 6 AS11259-ADC-002 2 6 AS11259-ADC-003 3 8 AS11259-ADC-004 4 7 AS11259-ADC-005 5 8 AS11259-ADC-006 6 8 AS11259-ADC-007 7 8 AS11259-ADC-008 8 8 AS11259-ADC-010 9 6.6 AS11259-ADC-011 10 4 AS11250-ADC-0012* 1 4
  • the average DAR value was calculated using hydrophobic chromatography HIC (see Anal. Chem. 2013, 85, 1699-1704) .
  • Hydrophobic interaction chromatography was performed on an Agilent 1100 (Agilent 1100) .
  • the stationary phase was a TSKgel butyl-NPR column (4.6x35 mm, 2.5 ⁇ m, Tosoh (Shanghai) Biotech Co., Ltd. ) .
  • the eluting gradient was a linear gradient, displaced from 100%buffer A [50 mM potassium phosphate (pH 7.0) + 1.5 M ammonium sulfate] to 100%buffer B [80%v/v 50 mM potassium phosphate (pH) 7.0) + 20%v/v isopropanol] in 25 minutes.
  • the flow rate was 0.8 mL/min
  • the column temperature was set at 30 °C
  • the detection wavelength was set at 230 nm and 280 nm.
  • ADC Average DAR value ADC Average DAR value AS11259-ADC-001 4.0 AS11259-ADC-007 NA AS11259-ADC-002 NA AS11259-ADC-008 4.1 AS11259-ADC-003 NA AS11259-ADC-010 4.0 AS11259-ADC-004 4.0 AS11259-ADC-011 2.1 AS11259-ADC-005 4.2 AS11259-ADC-0012 1.7 AS11259-ADC-006 4.1
  • the average DAR value should also be close to 4.
  • Indirect ELISA method was used to determine the binding ability of the antibody or antibody drug conjugate to the corresponding antigen: the CD79b antigen was ligated to the solid phase carrier (96-well ELISA plate) to form a solid phase antigen, and then the unbound antigen was washed and removed; A gradient-diluted antibody drug conjugate prepared by the present invention or a corresponding antibody thereof was added, wherein a specific antibody bound to an antigen to form a solid phase antigen-antibody complex, and an antibody or antibody drug conjugate that did not bind to a solid phase antigen was removed by washing. An ELISA anti-antibody was added to bind with the antibody or ADC antibody bound to the solid phase antigen, and unbound anti-antibody was removed by washing. Substrate solution was added, and then the optical density (OD) value at 450 nm/630 nm was read with a microplate reader T, based on which a curve was plotted, and the EC 50 was calculated.
  • OD optical density
  • ADC EC 50 (ng/mL) ADC EC 50 (ng/mL) AS11259 17.8 AS11259-ADC-006 50.2 AS11259-ADC-001 31.7 AS11259-ADC-007 62.9 AS11259-ADC-002 24.1 AS11259-ADC-008 29.0 AS11259-ADC-003 16.2 AS11259-ADC-010 23.2 AS11259-ADC-004 32.2 AS11259-ADC-011 23.6 AS11259-ADC-005 46.9 AS11259-ADC-0012 31.4
  • the antibody drug conjugates prepared herein have no significant difference in affinity for the antigen compared to the naked antibody AS11259.
  • ADC IC 50 (ng/mL) ADC IC 50 (ng/mL) AS11259-ADC-001 5.5 AS11259-ADC-007 8.1 AS11259-ADC-002 14.5 AS11259-ADC-008 2.4 AS11259-ADC-003 70.2 AS11259-ADC-010 3.9 AS11259-ADC-004 2.9 AS11259-ADC-011 10.2 AS11259-ADC-005 5.2 AS11259-ADC-0012 13.2 AS11259-ADC-006 5.0
  • Ramos cells were cultured in RPMI 1640 medium containing 10%fetal bovine serum at 37°C, 5%CO 2 . Cells were counted and collected in logarithmic growth phase, resuspended in 1: 1 PBS and Matrigel, and subcutaneously inoculated to the right side of the mice (CB17/SCID mice, female, 8-9 weeks, average body weight 18.4 g, purchased from Shanghai Lingchang Biotechnology Co., Ltd., animal certificate number: 2013001832088; feeding environment: SPF level) . The volume of cells inoculated per mouse was 0.1 ml, and the amount of cells inoculated was 1 ⁇ 10 7 cells per mouse. When average tumor size reached to 197 mm 3 , the body weights were weighed, and the mice were grouped randomly, followed by the initiation of the administration. The administration was via tail vein, and the administration frequency was one time only.
  • TGI Relative tumor inhibition rate
  • TGI 1-T/C (%) .
  • T/C % is the relative tumor growth rate, that is, the percentage ratio of relative tumor volume or tumor weight of the treatment group to the control group at a certain time point.
  • T and C are the relative tumor volumes (RTV) of the treatment group and the control group at a specific time point respectively.
  • the tumor volume calculation formula is: long diameter ⁇ short diameter 2 /2.
  • the day of tumor cell inoculation was defined as day 0. Tumors were measured twice weekly after administration.
  • the mean tumor volume of the vehicle control group reached 3003 mm 3 on the 14th day after administration (PG-D14) .
  • the euthanasia was performed and the relative tumor inhibition rate of the other drug groups on the 14th day after administration was calculated.
  • the experiment was terminated, and all the rest mice that were continuously observed were euthanized, while the number of mice in which tumors were regressed completely in each group was recorded.
  • Table 10 Therapeutical efficacy of AS11259-ADC-001, 002, 004, 008, 010, 011 on the subcutaneous xenografts of nude mice with human B-cell lymphoma Ramos nude mice
  • the mean tumor volume of the vehicle control group reached 3003 mm 3 on the 14th day after administration (PG-D14) .
  • the test drug AS11259-ADC-001 treatment group produced significant anti-tumor effects in three doses (1 mg/kg, 2.5 mg/kg, 5 mg/kg) compared with the vehicle control group, suggesting significant dose-response relationship.
  • the mean tumor volumes on the 14th day after administration (PG-D14) for the 3 dosage groups were 1558 mm 3 , 337 mm 3 , and 14 mm 3 , respectively, and the tumor growth inhibition (TGI) were 48.7%, 90.1%, and 99.6, respectively, which were statistically significantly different from the control group (p values are 0.023, 0.001, 0.001, respectively) .
  • TGI tumor growth inhibition
  • the high-dose (5 mg/kg) group the tumor growth was significantly inhibited in the mice after administration.
  • the test drug AS11259-ADC-002 treatment group produced a certain anti-tumor effect at the doses of 1 mg/kg and 2.5 mg/kg, compared with the vehicle control group.
  • the mean tumor volume was 2171 mm 3 and 1986 mm 3 , respectively, and the tumor growth inhibition (TGI) was 28.4%and 33.2%, respectively, but there was no statistically significant difference from the relative vehicle control groups (p values of 0.195 and 0.126, respectively) .
  • the AS11259-ADC-002 treatment group produced a significant anti-tumor effect compared to the vehicle control group at a dose of 5 mg/kg, and the mean tumor volume was 1294 mm 3 on day 14 after administration (PG-D14) .
  • the anti-tumor effect of the test drug AS11259-ADC-002 showed a significant dose-response relationship.
  • the test drug AS11259-ADC-004 treatment group produced a certain anti-tumor effect compared with the vehicle control group at the dose of 1 mg/kg.
  • the average tumor volume on the 14th day after administration (PG-D14) was 1762 mm 3 .
  • the test drug AS11259-ADC-004 produced significant anti-tumor effect compared with the vehicle control group at the dose of 2.5 mg/kg and 5 mg/kg.
  • the average tumor volume was 1835 mm 3 and 1030 mm 3 , respectively, and the tumor growth inhibition (TGI) was 41.2%and 66.0%respectively, both had statistically significant differences compared to vehicle control group (p values of 0.027 and 0.003, respectively) .
  • the anti-tumor effect of the test drug AS11259-ADC-004 showed a significant dose-response relationship.
  • the test drug AS11259-ADC-010 treatment group produced significant anti-tumor effects at three concentrations (1 mg/kg, 2.5 mg/kg, 5 mg/kg) compared with the vehicle control group, and showed significant dose-response relationship.
  • the average tumor volume on the 14th day after administration (PG-D14) was 1241 mm 3 , 15 mm 3 , and 12 mm 3 , respectively, and the tumor growth inhibition (TGI) were 57.8%, 99.5%, and 99.6%, respectively. There was a statistically significant difference (p values of 0.014, 0.001, 0.001, respectively) compared with the control group. In the median-dose (2.5 mg/kg) group, the tumor growth was significantly inhibited after administration.
  • the test drug AS11259-ADC-0012 treatment group produced a significant anti-tumor effect at the dose of 5 mg/kg compared with the vehicle control group, and the average tumor volume on the 14th day after administration (PG-D14) was 13 mm 3 .
  • Tumor growth was significantly inhibited in the mice of this treatment group after administration, and on the 10th day after administration (PG-D10) , the tumor in 2 out of 6 mice began to disappear, on the 31st day after administration (PG-D31) the tumor in 5 out of 6 mice had disappeared.
  • PG-D45 the tumors of the 5 mice showed no regression.
  • the test drug AS11259-ADC-011 treatment group produced significant anti-tumor effects at the doses of 2 mg/kg and 5 mg/kg compared with the vehicle control group, and the anti-tumor effect showed a significant dose-response relationship.
  • the mean tumor volumes were 818 mm 3 and 17 mm 3 , respectively.
  • the relative tumor inhibition rates were 73.8%and 99.4%, respectively, and there were statistically significant differences from the control group (both p value is 0.001) .
  • the high-dose (5 mg/kg) group the tumor growth was significantly inhibited after administration.
  • the tumor in 1 out of 6 mice began to disappear.
  • the tumors of all 6 mice had disappeared.
  • the tumors of the mice showed no regression.
  • the test drug AS11259-ADC-008 treatment group produced a significant anti-tumor effect compared with the vehicle control group at a dose of 2.5 mg/kg, and the average tumor volume was 1390 mm 3 on the 14th day after administration (PG-D14) .
  • the euthanasia was performed on the control group and the TGI of the drug treatment groups was calculated on the 17th day.
  • the experiment was terminated, and all the rest mice were euthanized, while the number of mice in which tumors were regressed completely in each group was recorded.
  • Table 11 Effect of AS11259-ADC-001, 002 and 004 on subcutaneous xenografts of nude mice with human lymphoma Granta-519
  • Table 12 Effect of AS11259-ADC-001, 0012, 0011 and 010 on subcutaneous xenografts of nude mice with human lymphoma Granta-519
  • the average tumor volume reached 2744 mm 3 on day 17 after administration (PG-D17) .
  • the test drug AS11259-ADC-001 treatment group produced significant anti-tumor effects at three concentrations (3.5 mg/kg, 7 mg/kg, 14 mg/kg) compared with the vehicle control group.
  • the average tumor volume on the 17th day after administration (PG-D17) was 68 mm 3 , 68 mm 3 , and 49 mm 3 , respectively, and the tumor growth inhibition (TGI) were 97.5%, 97.6%, and 98.2%, respectively, statistically extremely significantly different from the control group (p values are less than 0.001) .
  • the average tumor volume of the three administration groups reached 1268 mm 3 , 536 mm 3 and 184 mm 3 , respectively, indicating that the test substance showed significant dose-response relationship in anti-tumor effect.
  • the test drug AS11259-ADC-002 treatment group produced significant anti-tumor effects at three concentrations (3.5 mg/kg, 7 mg/kg, 14 mg/kg) compared with the vehicle control group, and presented significant dose-response relationship.
  • the average tumor volume was 871 mm 3 on the 17th day after administration (PG-D17)
  • the tumor growth inhibition (TGI) was 68.5%, with statistically extremely significant difference compared to the vehicle control group (p ⁇ 0.001) .
  • the average tumor volume was 246 mm 3 on the 17th day after administration (PG-D17) , and the tumor growth inhibition (TGI) was 90.8%, with statistically significant difference compared to the vehicle control group (p ⁇ 0.001) .
  • the average tumor volume was 101 mm 3 on the 17th day after administration (PG-D17) , and the tumor growth inhibition (TGI) was 96.3%with statistically significant difference compared to the vehicle control group (p ⁇ 0.001) .
  • the test drug AS11259-ADC-004 treatment group produced significant anti-tumor effects at three dosing (3.5 mg/kg, 7 mg/kg, 14 mg/kg) compared with the vehicle control group, and showed significant dose-response relationship.
  • the average tumor volume was 703 mm 3 on the 17th day after administration (PG-D17)
  • the tumor growth inhibition (TGI) was 74.3%, with statistically extremely significant difference compared to the vehicle control group (p ⁇ 0.001) .
  • the average tumor volume was 222 mm 3 on the 17th day after administration (PG-D17) , and the tumor growth inhibition (TGI) was 92.1%with statistically significant difference compared to the vehicle control group (p ⁇ 0.001) .
  • the average tumor volume was 117 mm 3 on the 17th day after administration (PG-D17) , and the tumor growth inhibition (TGI) was 95.7%, with statistically significant difference compared to the vehicle control group (p ⁇ 0.001) .
  • the average tumor volume of the vehicle control group reached 2535 mm 3 on the 17th day after administration (PG-D17) .
  • Test drug AS11259-ADC-001 (2.5 mg/kg) , AS11259-ADC-0012 (6 mg/kg) , AS11259-ADC-011 (5 mg/kg) and AS11259-ADC-010 (2.5 mg/kg) treatment groups significantly inhibited tumor growth after administration.
  • the average tumor volume was 17 mm 3 , 6 mm 3 , 11 mm 3 and 9 mm 3 , respectively.
  • the tumor growth inhibition (TGI) was 99.3%, 99.8%, 99.6%, and 99.6%, with statistically significant difference compared to the vehicle control group (all p values are 0.001) .
  • WSU-DLCL2 cells were cultured in RPMI 1640 medium containing 10%fetal calf serum at 37°C, 5%CO 2 .
  • Cells in logarithmic growth phase were collected and were inoculated subcutaneously by injection into the right flanks of NOD/SCID mice (female, 8-9 weeks of age from Beijing Ankai Yibo Biotechnology Co., Ltd., animal certificate number: 11402400012441; feeding environment: SPF level) ,
  • the volume of cells inoculated per mouse was 0.1 ml, and the amount of cells inoculated was 1 ⁇ 10 7 .
  • When average tumor size reached to 200 mm 3 weigh the body weight, and the mice were grouped randomly. and the administration was initiated. The administration was via tail vein, and the administration frequency was one time only.
  • the average tumor volume reached 2146 mm 3 on the 32th day after administration (PG-D32) .
  • the euthanasia was performed on the control group and the TGI of the drug treatment groups was calculated on the 32th day.
  • the experiment was terminated, and all the rest mice were euthanized, while the number of mice in which tumors were regressed completely in each group was recorded.
  • the average tumor volume reached 2360 mm 3 on the 35th day after administration (PG-D35) .
  • the euthanasia was performed on the control group and the TGI of the drug treatment groups was calculated on the 35th day.
  • the experiment was terminated, and all the rest mice were euthanized, while the number of mice in which tumors were regressed completely in each group was recorded.
  • Table 13 Therapeutical effect of AS11259-ADC-001, 004 on subcutaneous xenografts of nude mice with human lymphoma WSU-DLCl2
  • Table 14 Therapeutical effect of AS11259-ADC-001, 0012, 011, and 010 on subcutaneous xenografts of nude mice with human lymphoma WSU-DLCl2
  • the test drug AS11259-ADC-001 treatment group produced significant anti-tumor effects at three dosing (3.5 mg/kg, 7 mg/kg, 14 mg/kg) compared with the vehicle control group, and presented significant dose-response relationship.
  • the average tumor volume was 845 mm 3 on the 32nd day after administration (PG-D32)
  • the test drug AS11259-ADC-004 treatment group produced a slight anti-tumor effect at three dosing groups (3.5 mg/kg, 7 mg/kg, 14 mg/kg) compared with the vehicle control group, but without significant statistical differences.
  • the average tumor volume on the 32nd day after administration (PG-D32) was 1526 mm 3 , 1632 mm 3 , and 1521 mm 3 , respectively, and the tumor growth inhibition (TGI) were 28.3%, 24.0%, and 28.6, respectively.
  • the p values were 0.080, 0.123, and 0.080, respectively.
  • the test drug AS11259-ADC-001 (3.5 mg/kg)
  • AS11259-ADC-0012 (8.4 mg/kg)
  • AS11259-ADC-011 (7 mg/kg)
  • AS11259-ADC-010 (3.5 mg/kg) treatment group all significantly inhibited tumor growth after administration.
  • the average tumor volumes were 912 mm 3 , 840 mm 3 , 700 mm 3 and 913 mm 3 , respectively.
  • the tumor growth inhibition (TGI) were 61.0%, 64.4%, 71.4%, and 62.0%, with p values ⁇ 0.001, ⁇ 0.001, ⁇ 0.001, and 0.001 respectively.
  • the test drug was well tolerated by the mice of all dosing groups.

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JP2022506310A (ja) 2022-01-17
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CN111116745B (zh) 2022-10-14
BR112021006919A2 (pt) 2021-07-20
CA3113864A1 (en) 2020-05-07
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AU2019370755A1 (en) 2021-05-20
KR20210087044A (ko) 2021-07-09
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