WO2018028635A1 - Anticorps monoclonal humanisé contre le virus zika et ses applications - Google Patents

Anticorps monoclonal humanisé contre le virus zika et ses applications Download PDF

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WO2018028635A1
WO2018028635A1 PCT/CN2017/096816 CN2017096816W WO2018028635A1 WO 2018028635 A1 WO2018028635 A1 WO 2018028635A1 CN 2017096816 W CN2017096816 W CN 2017096816W WO 2018028635 A1 WO2018028635 A1 WO 2018028635A1
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antibody
light chain
amino acid
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高福
严景华
王奇慧
仝舟
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中国科学院微生物研究所
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/08Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses
    • C07K16/10Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses from RNA viruses
    • C07K16/1081Togaviridae, e.g. flavivirus, rubella virus, hog cholera virus
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/395Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/08Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses
    • C07K16/10Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses from RNA viruses
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
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    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/10Cells modified by introduction of foreign genetic material
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/505Medicinal preparations containing antigens or antibodies comprising antibodies
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/52Constant or Fc region; Isotype
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/56Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Definitions

  • the invention relates to a human monoclonal antibody of Zika virus and application thereof, and belongs to the technical field of medicine.
  • ZIKV Zika virus
  • Zika virus which belongs to the flavivirus, is mainly transmitted by mosquito bites, but blood transmission, sexual transmission, and mother-to-child transmission have also been reported.
  • ZIKV Zika virus
  • the virus is mainly prevalent in Africa and the tropical regions of Asia.
  • the Zika outbreak in Brazil broke out with the spread of people to other countries.
  • the current outbreak has resulted in more than 80,000 infections in more than 60 countries or regions.
  • the neutralizing antibody has high specificity and can block the invasion of the virus, and is an effective means for treating viral infection.
  • the viral envelope protein E protein mediates the binding and invasion of the virus to the host cell and is the most important protective antigen of the virus.
  • the X-ray crystallographic structure shows that the flavivirus E protein has three domains: DI, DII and DIII. It is generally believed that DIII is responsible for mediating the binding of the virus to the receptor.
  • Previous studies have shown that most of the effective neutralizing antibodies are neutralizing epitopes that recognize DIII.
  • recent data indicate that E-protein dimers on the surface of the virus as well as high-neutral epitopes are also present in adjacent dimers.
  • the DII head (amino acids 98-110) contains a highly conserved fusion loop (FL) that plays a key role in membrane fusion during viral invasion.
  • FL fusion loop
  • Different flavivirus FL regions are highly conserved, and during viral infection, immune cells produce large amounts of antibodies against FL.
  • RNA viruses have high mutational properties under antibody pressure, and although some neutralizing antibodies have been identified, more new antibodies against different epitopes are essential for treatment.
  • the object of the present invention is to identify specific protective ZIKV neutralizing antibodies.
  • the present invention firstly uses the ZIKV-E protein expressed by Escherichia coli as an antigen, and selects memory B cells which can specifically bind ZIKV-E protein from PBMCs of a patient in a convalescent ZIKV by flow sorting, and then RT-PCR of selected single B cells to obtain variable region sequences and fragments of antibodies, and further with constant regions Linked to an expression vector.
  • a series of functional tests including binding to ZIKE-E protein, in vitro neutralization effect, and in vivo protective ability, were obtained, and 3 strains with full or partial protection of Zika virus were obtained. Human monoclonal antibody.
  • a first object of the invention is to provide an antibody which:
  • the antibody is designated Z3L1, Z20 or Z23; wherein the amino acid sequence of the heavy chain variable region of Z3L1 is SEQ ID NO: 1 and the amino acid sequence of the light chain variable region is SEQ ID NO
  • the amino acid sequence of the heavy chain variable region of Z20 is SEQ ID NO: 3 and the amino acid sequence of the light chain variable region is SEQ ID NO: 4
  • the amino acid sequence of the heavy chain variable region of Z23 is SEQ ID NO:
  • the light chain variable region amino acid sequence is SEQ ID NO: 6.
  • nucleotide sequence of the heavy chain of Z3L1 is SEQ ID NO: 7
  • nucleotide sequence of the light chain is SEQ ID NO: 8.
  • nucleotide sequence of the heavy chain of Z20 is SEQ ID NO: 9
  • nucleotide sequence of the light chain is SEQ ID NO: 10.
  • nucleotide sequence of the heavy chain of Z23 is SEQ ID NO: 11
  • nucleotide sequence of the light chain is SEQ ID NO: 12.
  • the heavy chain of the antibody comprises a heavy chain variable region and a heavy chain constant region, wherein the amino acid sequence of the heavy chain constant region is set forth in SEQ ID NO: 13.
  • the light chain of the antibody Z20 or Z23 is a kappa chain
  • the light chain of Z3L1 is a ⁇ chain
  • the light chain comprises a light chain variable region and a light chain constant region
  • the light chain of the kappa chain The amino acid sequence of the constant region is set forth in SEQ ID NO: 15.
  • the amino acid sequence of the light chain constant region of the lambda chain is set forth in SEQ ID NO: 17.
  • the occurrence of interaction refers to binding
  • the three antibodies of the present invention are derived from the same patient and all target the envelope protein-E protein unique to Zika virus, inhibiting virus-to-cell by inhibiting E protein-mediated receptor binding and/or membrane fusion processes. Infection.
  • a second object of the present invention is to provide use of the antibody for the preparation of a medicament for the treatment and/or prevention of Zika virus.
  • a third object of the present invention is to provide a pharmaceutical composition comprising the human monoclonal antibodies Z3L1, Z20 and/or Z23.
  • the pharmaceutical composition further comprises a medically acceptable carrier.
  • a fourth object of the present invention is to provide a kit comprising an antigen of the antibody, or a DNA molecule encoding the antigen, or a recombinant vector/expression cassette/transgenic cell line expressing the antigen /Recombinant bacteria.
  • a fifth object of the present invention is to provide a gene sequence encoding the human monoclonal antibody Z3L1, Z20 or Z23.
  • the heavy chain of the antibody comprises a heavy chain variable region and a heavy chain constant region, wherein the amino acid sequence of the heavy chain constant region is set forth in SEQ ID NO: 13 (the nucleotide sequence is set forth in SEQ ID NO: 14).
  • the sequence encoding the heavy chain of the antibody comprises a CMV promoter sequence, an EcoR I cleavage site sequence, a leader sequence, a sequence encoding a heavy chain variable region, a coding heavy chain Sequence of the constant region, sequence of the Xho I restriction site.
  • the light chain of the antibody is a kappa chain and/or a lambda chain; the light chain comprises a light chain variable region and a light chain constant region.
  • the sequence encoding the light chain of the antibody in turn comprises a CMV promoter sequence, a first restriction site sequence, a leader sequence, a sequence encoding a light chain variable region, encoding a light chain
  • the kappa chain has an amino acid sequence of a light chain constant region as set forth in SEQ ID NO: 15 (nucleotide sequence is set forth in SEQ ID NO: 16), wherein the first enzyme The cleavage site is Sac I.
  • the ⁇ chain, the amino acid sequence of the light chain constant region thereof is set forth in SEQ ID NO: 17 (the nucleotide sequence is represented by SEQ ID NO: 18), wherein the first enzyme The cleavage site is EcoR I.
  • amino acid sequence of the leader sequence is set forth in SEQ ID NO: 19 (the nucleotide sequence is set forth in SEQ ID NO: 20).
  • the invention also claims an expression vector or cell comprising the gene sequence or expressing the antibody.
  • the present invention obtained three human high- and medium-active ZIKV antibodies: Z3L1, Z20 and Z23. These 3 antibodies have been The reported ZIKV antibody sequences are completely different and are 3 newly discovered antibodies. The binding constants of these three antibodies to ZIKV-E were 5.39 ⁇ M (Z3L1), 0.16 ⁇ M (Z20) and 0.44 ⁇ M (Z23), respectively. All three human antibodies have strong ZIKV neutralizing activity. Moreover, Z3L1, Z20 and Z23 can completely or partially protect mice from lethal doses of ZIKV. The three human antibodies of the invention have application value in clinical treatment and prevention of ZIKV.
  • Figure 1 ZIKV-E protein purified molecular sieve and SDS-PAGE results
  • Figure 2 Z3L1 purified Protein A (A) and molecular sieve chromatography (B) results;
  • Figure 3 Z20 purified Protein A (A) and molecular sieve chromatography (B) results;
  • Figure 4 Z23 purified Protein A (A) and molecular sieve chromatography (B) results;
  • Figure 5 Kinetic curves of Z20 (A), Z23 (B) and Z3L1 (C and D) and ZIKV-E;
  • Figure 7 Neutralization curve of antibody to Vero amplified ZIKV
  • Figure 8 Protective effect of three strains of antibodies on ZIKV-infected mice; A is the survival rate of mice, and B is the change in body weight of surviving mice.
  • the ZIKV E (amino acid sequence shown in SEQ ID NO: 21, nucleotide sequence shown in SEQ ID NO: 22) extracellular region DNA fragment was digested with NdeI and XhoI, and ligated into the pET21a vector.
  • the 3' end of the ZIKV E protein coding region is ligated with the coding sequence of six histidine tags (hexa-His-tag) and a translation stop codon.
  • the ligation product was then transformed into BL21 E. coli competent cells.
  • the monoclonal was inoculated into 40 mL of LB medium and cultured for 6-8 hours.
  • the inclusion bodies were harvested and the inclusion bodies were refolded by dilution.
  • the reconstituted solution was concentrated and replaced with 20 mM Tris, 150 mM NaCl, pH 8.0 buffer.
  • the concentrated protein solution was further purified by size exclusion chromatography using AKTA-purifier (GE) and superdex 200 Hiload 16/60 column (GE) using buffer A (20 mM Tris, 150 mM NaCl, pH 8.0) while monitoring.
  • the UV absorbance at 280 nm was collected for the protein of interest and the protein purity was identified by SDS-PAGE. The result is shown in Figure 1.
  • PBMCs peripheral blood cells
  • the isolated PBMCs were incubated with a density of 10 7 /mL at a final concentration of 100 nM of ZIKV-E protein for half an hour, then washed twice with PBS and incubated with the following antibodies: anti-human CD3/PE-Cy5, Anti-human CD16/PE-Cy5, anti-human CD235a/PE-Cy5, anti-human CD19/APC-Cy7, anti-human CD27/Pacific Blue, anti-human CD38/APC, anti-human IgG/FITC, and anti-His/PE.
  • the antibody was incubated on ice for half an hour and then washed twice with PBS.
  • the cells of PE-Cy5 - APC - APC-Cy7 + Pacific Blue + FITC + PE + were collected by FACSAria III and directly collected into a 96-well plate at 1 cell/well.
  • Example 3 Single B cell PCR, sequence analysis and human antibody design
  • Example 2 The B cells obtained in Example 2 were reverse transcribed by Superscript III reverse transcriptase (Invitrogen), and the reverse transcription primers were as shown in Table 1 (sequences such as SED ID No. 23 to SED ID NO. 30), and reacted at 55 ° C for 60 min.
  • PCR was carried out using HotStar Tap Plus enzyme (QIAgen) to amplify the antibody variable region sequence (PCRa).
  • the corresponding primers were designed, and the reaction conditions were as follows: 95 ° C, 5 min; 95 ° C 30 s, 55 ° C (heavy chain / kappa chain) / 50 ° C ( ⁇ chain) 30 s, 72 ° C 90 s, 35 cycles; 72 ° C, 7 min.
  • PCRb This was used as a template for another round of PCR (PCRb) under the following conditions: 95 ° C, 5 min; 95 ° C 30 s, 58 ° C (heavy chain) / 60 ° C ( ⁇ chain) / 64 ° C ( ⁇ chain) 30 s, 72 ° C 90 s , 35 cycles; 72 ° C, 7 min.
  • the PCR product was isolated by electrophoresis on a 1.2% agarose gel.
  • the strip size was recovered from the 400-500 bp gel and sent to the sequencing company for sequencing.
  • the sequencing results were analyzed using IMGT online software.
  • variable region sequence was analyzed and the constant region of the corresponding heavy chain/kappa chain/lambda chain was ligated by bridge PCR and cloned into the expression vector pCAGGS.
  • heavy chain is linked to the lambda chain by EcoRI and XhoI
  • kappa chain is linked to XhoI by SacI.
  • B cell sequencing and expression plasmid construction are as follows:
  • the human antibody design strategy is as follows:
  • Heavy chain CMV promoter-EcoR I-Leader sequences-heavy chain variable region-C H -Xho I;
  • amino acid sequence of the Leader sequences is SEQ ID NO: 19 (nucleotide sequence is SEQ ID NO: 20).
  • 293T cells were cultured in DMEM containing 10% FBS. 293T was co-transfected with a plasmid containing the light and heavy chain encoding genes of a particular antibody. After 4-6 hours of transfection, the cells were changed to serum-free DMEM for further 3 days, and the supernatant was collected, supplemented with DMEM, cultured for another 4 days, and the supernatant was collected.
  • the collected supernatant was centrifuged at 5000 rpm for 30 min, mixed with an equal volume of a buffer containing 20 mM sodium phosphate (pH 8.0), filtered through a 0.22 ⁇ m filter, and then bound to a proteinA prepacked column (5 mL, GE Healthcare). The bound protein was eluted with 10 mM glycine (pH 3.0). This protein was collected and concentrated for molecular sieve chromatography. The target peak was determined by SDS-PAGE, and the results are shown in Figures 2, 3 and 4, indicating that the target protein was normally expressed.
  • amino acid sequence of the heavy chain variable region of Z3L1 is SEQ ID NO: 1 (nucleotide sequence is SEQ ID NO: 7) and the light chain variable region amino acid sequence is SEQ ID NO: 2 (nucleotide sequence is SEQ. ID NO: 8).
  • the light chain of Z3L1 is ⁇ type, and the amino acid sequence of light chain constant region C L( ⁇ ) is SEQ ID NO: 17 (nucleotide sequence is SEQ ID NO: 18)
  • the amino acid sequence of the heavy chain variable region of Z20 is SEQ ID NO: 3 (nucleotide sequence is SEQ ID NO: 9) and the light chain variable region amino acid sequence is SEQ ID NO: 4 (nucleotide sequence is SEQ ID: NO: 10), the amino acid sequence of the heavy chain variable region of Z23 is SEQ ID NO: 5 (nucleotide sequence is SEQ ID NO: 11) and the light chain variable region amino acid sequence is SEQ ID NO: 6 (nucleoside The acid sequence is SEQ ID NO: 12).
  • the light chains of Z20 and Z23 are both kappa type, and the amino acid sequence of the light chain constant region CL ( ⁇ ) is SEQ ID NO: 15 (nucleotide sequence is SEQ ID NO: 16)
  • the antibody Z3L1 the amino acid sequence of Z20, Z23 heavy chain constant region of the C H is SEQ ID NO: 13 (nucleotide sequence SEQ ID NO: 14).
  • Biacore T100 Biacore Inc.
  • an antibody of anti-human IgG was immobilized to a channel (flow) (Fc) 1 and Fc 2 of a CM5 chip by amino coupling.
  • the fixed amount is controlled at around 10,000 response units (RU).
  • the channel was adjusted to Fc2, and then the purified antibody was bound by antibody capture.
  • the flow rate was controlled at 10 ⁇ L/min, and the injection amount was about 100 RU for 1 min.
  • the ZIKV-E protein was diluted with 10 mM HEPES, 150 mM NaCl, pH 7.4, and the flow rate was adjusted to 30 ⁇ L/min. After the channel was adjusted to the Fc2-Fc1 mode, the ZIKA-E protein was loaded one by one from a low concentration.
  • the curve composition is shown in the kinetic curve shown in Figure 5.
  • the results are shown in Table 3.
  • the calculation of the binding kinetic constants was performed using BIAevaluation software T100 (Biacore, Inc.) software.
  • the results of SPR showed that all three antibodies could bind to ZIKV-E protein, and the dissociation constant was 0.16 ⁇ M to 5.39 ⁇ M.
  • the purified antibody was diluted 3 fold, mixed with a 1:150 dilution of ZIKV (C6/36 or Vero amplification) and incubated for 60 minutes at 37 °C. The mixture was then added to a 24-well plate that had been covered with Vero cells at 300 ⁇ L/well. After incubating for 1 hour at 37 ° C, 1 mL of supplement medium (DMEM, 10% FBS) per well was added, and incubation was continued for 30 hours. The cells were collected, treated with PBS containing 4% paraformaldehyde, 0.05% soponin, and allowed to stand on ice for 30 min.
  • DMEM supplement medium
  • the cells were washed twice with solution solution (PBS, 1% BSA, 0.01% soponin), and incubated with 2 ⁇ g/mL of Z1 antibody for 30 min on ice, the solution solution was washed twice, and then diluted with 1:200 anti-human Incubate on IgG for 30 min in the dark. After the solution solution was washed twice, the cell positive ratio was measured by FACSCanto. The neutralization ability of the antibody against ZIKV was calculated according to the positive ratio at different concentrations. The results are shown in Figures 6 and 7, and the results are shown in Table 4.
  • Type I interferon receptor (Interferon ⁇ R) knockout mice (B6.129S2-Ifnar1 ⁇ tm1Agt>/Mmjax, Jackson Laboratories) were grouped in 3-5 groups. Each mouse was intraperitoneally injected with 1 ⁇ 10 6 PFU of ZIKV (GenBank accession number: KX087101.2). A single dose of 10 mg/kg of antibody Z3L1, Z20, Z23 or an equal volume of PBS was administered intraperitoneally to infected mice 24 hours after infection. The survival and body weight changes of the mice were recorded within 14 days. Mice with a change in body weight of more than 20% or with symptoms of spasticity were sacrificed. The results are shown in Figure 8. As can be seen from Fig.
  • the crystal structure of Zika virus E protein and the two antibodies Z3L1 and Z20, and the cryo-electron microscopic structure of Zika virus and Z23, the amino acid positions of the three antibodies interacting with Zika virus E protein are shown in Table 5-7.
  • the threshold for interaction site analysis is set at Among them, Z3L1 mainly binds to an E protein, and the binding domain is mainly DI, DII and the hinge region connecting the two domains; and the binding sites of Z20 and Z23 involve two E in one E protein dimer. Protein monomer.
  • Z20 mainly binds to the DII region of two E proteins
  • Z23 mainly binds to DIII.
  • the present invention obtains three human high-intensity and active ZIKV antibodies by screening ZIKV-E-specific memory B cells in a rehabilitation patient: Z3L1, Z20 and Z23. These three antibodies are completely different from the already reported Zika antibody sequences and are three newly discovered antibodies. The binding constants of these three antibodies to ZIKV-E were 5.39 ⁇ M (Z3L1), 0.16 ⁇ M (Z20) and 0.44 ⁇ M (Z23), respectively. All three human antibodies have strong Zika virus neutralizing activity. Moreover, Z3L1, Z20 and Z23 can completely or partially protect mice from lethal doses of Zika virus. Structural information indicates that the three antibodies bind to different domains of the E protein, respectively. This suggests that the three human antibodies have great potential to play a role in the clinical treatment and prevention of Zika in cocktail therapy.

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Abstract

L'invention porte sur un anticorps monoclonal humanisé pour le virus Zika, et sur ses applications, se rapportant au domaine technique de la médecine. En utilisant la protéine E du virus Zika exprimée par E. coli en tant qu'antigène, en choisissant parmi les PBMC d'un patient atteint du virus Zika en convalescence, une cellule B mémoire capable de se lier spécifiquement à la protéine E du virus Zika par tri de flux, puis la réalisation d'une RT-PCR sur la cellule B unique sélectionnée, l'obtention d'une séquence et d'un fragment d'une région variable de l'anticorps, et la connexion supplémentaire de celle-ci avec une région constante dans un vecteur d'expression. Après l'expression par une cellule de mammifère et la purification, la réalisation d'une série de tests de fonction, comprenant la détection de la force de liaison avec la protéine ZIKV-E, des résultats de neutralisation in vitro, une capacité de protection in vivo, etc. ce qui permet d'obtenir trois souches d'anticorps monoclonaux humanisés ayant une protection complète contre l'infection par le virus Zika.
PCT/CN2017/096816 2016-08-10 2017-08-10 Anticorps monoclonal humanisé contre le virus zika et ses applications WO2018028635A1 (fr)

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