WO2017192671A1 - Yeast vaccine vector including immunostimulatory and antigenic polypeptides and methods of using the same - Google Patents

Yeast vaccine vector including immunostimulatory and antigenic polypeptides and methods of using the same Download PDF

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Publication number
WO2017192671A1
WO2017192671A1 PCT/US2017/030764 US2017030764W WO2017192671A1 WO 2017192671 A1 WO2017192671 A1 WO 2017192671A1 US 2017030764 W US2017030764 W US 2017030764W WO 2017192671 A1 WO2017192671 A1 WO 2017192671A1
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WO
WIPO (PCT)
Prior art keywords
polypeptide
vaccine composition
yeast
hmgb
antigenic
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Ceased
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PCT/US2017/030764
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English (en)
French (fr)
Inventor
Billy Hargis
Leona Nicole CALHOUN
Luc Berghman
Lisa Bielke
Olivia B. FAULKNER
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Texas A&M University System
University of Arkansas at Fayetteville
University of Arkansas at Little Rock
Original Assignee
Texas A&M University System
University of Arkansas at Fayetteville
University of Arkansas at Little Rock
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Filing date
Publication date
Priority to JP2018558201A priority Critical patent/JP7467027B2/ja
Priority to BR112018072592-7A priority patent/BR112018072592A2/pt
Priority to SG11201809686SA priority patent/SG11201809686SA/en
Priority to CA3023144A priority patent/CA3023144A1/en
Priority to EP17793221.7A priority patent/EP3452069A4/en
Priority to AU2017260323A priority patent/AU2017260323B2/en
Priority to KR1020187034980A priority patent/KR20190015712A/ko
Priority to KR1020237015693A priority patent/KR102767638B1/ko
Application filed by Texas A&M University System, University of Arkansas at Fayetteville, University of Arkansas at Little Rock filed Critical Texas A&M University System
Priority to MX2018013331A priority patent/MX2018013331A/es
Publication of WO2017192671A1 publication Critical patent/WO2017192671A1/en
Anticipated expiration legal-status Critical
Priority to JP2022007727A priority patent/JP2022040389A/ja
Priority to AU2023255055A priority patent/AU2023255055A1/en
Priority to JP2023209806A priority patent/JP2024023648A/ja
Ceased legal-status Critical Current

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    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/0005—Vertebrate antigens
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides
    • A61K38/16—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • A61K38/17—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • A61K38/177—Receptors; Cell surface antigens; Cell surface determinants
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
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    • A61K39/002—Protozoa antigens
    • A61K39/012—Coccidia antigens
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
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    • A61K39/002—Protozoa antigens
    • A61K39/015—Hemosporidia antigens, e.g. Plasmodium antigens
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
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    • A61K39/025—Enterobacteriales, e.g. Enterobacter
    • A61K39/0258—Escherichia
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    • A61K39/0275—Salmonella
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    • A61K39/107—Vibrio
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
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    • A61K39/12—Viral antigens
    • A61K39/145—Orthomyxoviridae, e.g. influenza virus
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/39—Medicinal preparations containing antigens or antibodies characterised by the immunostimulating additives, e.g. chemical adjuvants
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/395—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
    • A61K39/39533—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals
    • A61K39/3955—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals against proteinaceous materials, e.g. enzymes, hormones, lymphokines
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/395—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
    • A61K39/39533—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals
    • A61K39/39558—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals against tumor tissues, cells, antigens
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04—Antibacterial agents
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P33/00—Antiparasitic agents
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/37—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from fungi
    • C07K14/39—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from fungi from yeasts
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/37—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from fungi
    • C07K14/39—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from fungi from yeasts
    • C07K14/395—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from fungi from yeasts from Saccharomyces
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705—Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70575—NGF/TNF-superfamily, e.g. CD70, CD95L, CD153, CD154
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/51—Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/52—Bacterial cells; Fungal cells; Protozoal cells
    • A61K2039/521—Bacterial cells; Fungal cells; Protozoal cells inactivated (killed)
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/51—Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/52—Bacterial cells; Fungal cells; Protozoal cells
    • A61K2039/522—Bacterial cells; Fungal cells; Protozoal cells avirulent or attenuated
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/51—Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/52—Bacterial cells; Fungal cells; Protozoal cells
    • A61K2039/523—Bacterial cells; Fungal cells; Protozoal cells expressing foreign proteins
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/54—Medicinal preparations containing antigens or antibodies characterised by the route of administration
    • A61K2039/541—Mucosal route
    • A61K2039/542—Mucosal route oral/gastrointestinal
    • A—HUMAN NECESSITIES
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    • A61K2039/54—Medicinal preparations containing antigens or antibodies characterised by the route of administration
    • A61K2039/541—Mucosal route
    • A61K2039/543—Mucosal route intranasal
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/555—Medicinal preparations containing antigens or antibodies characterised by a specific combination antigen/adjuvant
    • A61K2039/55511—Organic adjuvants
    • A61K2039/55516—Proteins; Peptides
    • A—HUMAN NECESSITIES
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    • A61K2039/55511—Organic adjuvants
    • A61K2039/55583—Polysaccharides
    • A—HUMAN NECESSITIES
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    • A61K2039/57—Medicinal preparations containing antigens or antibodies characterised by the type of response, e.g. Th1, Th2
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
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    • A61K2039/70—Multivalent vaccine
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2319/00—Fusion polypeptide
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2319/00—Fusion polypeptide
    • C07K2319/40—Fusion polypeptide containing a tag for immunodetection, or an epitope for immunisation
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Definitions

  • HMGB 1 polypeptides and functional fragments or homolog s thereof include polypeptides identical to, or at least 99% identical, at least 98% identical, at least 95% identical, at least 90% identical, at least 85% identical, or at least 80% identical to the HMGB 1 polypeptides of the chicken HMGB 1 sequence or HMGB 1 box al, HMGB 1 box a2, HMGB 1 box bl, HMGB 1 box b2, HMGB 1 RAGE binding domain, or HMGB 1 proinflammatory cytokine activity, respectively.
  • the CD40 ligand may be a CD40 agonistic antibody or portion thereof.
  • CD40 agonistic antibodies are disclosed at least in International Application No. WO2015/187969.
  • CD40 antibodies and agonisitic CD40 antibodies are also commercially available for several species, in particular mouse and human.
  • An antibody is agonistic for CD40 if it is capable of inducing signaling within the target cell expressing CD40. The signalling via CD40 results in increased expression of CD40 and TNF receptors on the surface of the antigen- presenting cells and induces production of reactive oxygen species and nitric oxide, and B cell activation leading to isotype switching.
  • Polynucleotides encoding the antigenic polypeptide or immunostimulatory polypeptides may be inserted into the yeast of the vaccine composition and expressed to generate the antigenic polypeptide and the immunostimulatory polypeptide.
  • the polynucleotides may be inserted into the chromosome of the vaccine composition or encoded on plasmids or other extrachromosomal DNA such as on a YAC (yeast artificial chromosome).
  • YAC yeast artificial chromosome
  • polynucleotides encoding the antigenic polypeptide and/or the immunostimulatory polypeptide may be expressed independently or are inserted into a yeast vaccine polynucleotide that is expressed.
  • Heterologous polynucleotides can also be obtained from pathogenic bacteria, e.g., genes encoding bacterial proteins such as toxins, and outer membrane proteins. Further, heterologous polynucleotides from parasites, such as Eimeria are attractive candidates for use in a yeast vectored vaccine composition.
  • HMGB 1 has engineered Pichia pastoris for cell surface expression of HMGB 1 using a plasmid integrated system to chromosomally insert the HMGB 1 protein into Pichia pastoris increasing the immune response to the vaccine cargo.
  • Pichia pastoris yields 10- to 100-fold higher protein expression than Saccharomyces cerevisiae.
  • HMGB 1 sends a danger signal to the immune system triggering the RAGE response.
  • the phagocytosis assay described above shows that HMGB l is a potent immune stimulatory molecule that can increase uptake of the carrier system, for example, Salmonella Enteriditis, into murine macrophages.
  • the Pichia pastoris-HMGB 1 positive clones #3, 4, and 6 were inactivated using 0.3% glutaraldehyde in sterile water and mixed 1:2 in mannosylated chitosan adjuvant. See WO 2014/070709 which is incorporated herein by reference in its entirety.
  • Pichia pastoris X-33 wild type was obtained from Invitrogen (Carlsbad, CA, USA) as part of the Easy SelectTM Pichia Expression Kit.
  • TOP10 electrocompetent E. coli (Invitrogen) was used for all necessary plasmid propagation during vaccine construction. Following transformations with plasmid DNA, E. coli was propagated at 37°C using either LB medium supplemented with 100 ⁇ g/mL Ampicillin, or low salt LB medium containing 50 ⁇ g/mL Zeocin.
  • the MCA (0.5%) plus Pichia construct (1x10 cells) was delivered in 0.25 mL for both the prime and the boost by oral gavage.
  • the final concentration of MCA in the drinking water was 0.004% and the final concentration of the Pichia was 2.3 x 10 6 cells/mL of drinking water and this was used for both prime and boost administration.
  • the lesion data were analyzed using a PROC MIXED ANOVA model in SAS, the assumption was made that the difference in severity between a score of 0 and 1 was similar to the difference in severity between a score of 1 and 2, and so on. Under this assumption, score means may be analyzed for the PROC MIXED ANOVA analysis. Lesion scores range from 0 to 4 as described by Johnson and Reid (1970). Tests of random and fixed effects were performed. The differences of means were calculated to determine any significant differences between lesion scores among treatment groups. The data was determined to have a Poisson distribution and a Tukey Kramer test was used to determine whether there were any statistically significant differences between treatment groups.

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PCT/US2017/030764 2016-05-03 2017-05-03 Yeast vaccine vector including immunostimulatory and antigenic polypeptides and methods of using the same Ceased WO2017192671A1 (en)

Priority Applications (12)

Application Number Priority Date Filing Date Title
KR1020187034980A KR20190015712A (ko) 2016-05-03 2017-05-03 면역자극 및 항원 폴리펩티드를 포함하는 효모 백신 벡터, 및 그를 이용하는 방법
SG11201809686SA SG11201809686SA (en) 2016-05-03 2017-05-03 Yeast vaccine vector including immunostimulatory and antigenic polypeptides and methods of using the same
CA3023144A CA3023144A1 (en) 2016-05-03 2017-05-03 Yeast vaccine vector including immunostimulatory and antigenic polypeptides and methods of using the same
EP17793221.7A EP3452069A4 (en) 2016-05-03 2017-05-03 Yeast vaccine vector with immunostimulating and antigenic polypeptides and method for using them
AU2017260323A AU2017260323B2 (en) 2016-05-03 2017-05-03 Yeast vaccine vector including immunostimulatory and antigenic polypeptides and methods of using the same
KR1020237015693A KR102767638B1 (ko) 2016-05-03 2017-05-03 면역자극 및 항원 폴리펩티드를 포함하는 효모 백신 벡터, 및 그를 이용하는 방법
MX2018013331A MX2018013331A (es) 2016-05-03 2017-05-03 Vector de vacuna de levadura que incluye polipeptidos inmunoestimuladores y antigenicos y metodos para su uso.
JP2018558201A JP7467027B2 (ja) 2016-05-03 2017-05-03 免疫刺激性ポリペプチドおよび抗原性ポリペプチドを含む酵母ワクチンベクター並びにそれを使用する方法
BR112018072592-7A BR112018072592A2 (pt) 2016-05-03 2017-05-03 vetor de vacina de levedura que inclui polipeptídeos imunoestimulantes e antigênicos, e métodos de uso dos mesmos
JP2022007727A JP2022040389A (ja) 2016-05-03 2022-01-21 免疫刺激性ポリペプチドおよび抗原性ポリペプチドを含む酵母ワクチンベクター並びにそれを使用する方法
AU2023255055A AU2023255055A1 (en) 2016-05-03 2023-10-30 Yeast vaccine vector including immunostimulatory and antigenic polypeptides and methods of using the same
JP2023209806A JP2024023648A (ja) 2016-05-03 2023-12-13 免疫刺激性ポリペプチドおよび抗原性ポリペプチドを含む酵母ワクチンベクター並びにそれを使用する方法

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US201662331044P 2016-05-03 2016-05-03
US62/331,044 2016-05-03

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WO2017192671A1 true WO2017192671A1 (en) 2017-11-09

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US (2) US10682398B2 (https=)
EP (1) EP3452069A4 (https=)
JP (3) JP7467027B2 (https=)
KR (2) KR102767638B1 (https=)
AR (1) AR108688A1 (https=)
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