WO2016179554A1 - Histone deacetylase inhibitors and compositions and methods of use thereof - Google Patents

Histone deacetylase inhibitors and compositions and methods of use thereof Download PDF

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Publication number
WO2016179554A1
WO2016179554A1 PCT/US2016/031335 US2016031335W WO2016179554A1 WO 2016179554 A1 WO2016179554 A1 WO 2016179554A1 US 2016031335 W US2016031335 W US 2016031335W WO 2016179554 A1 WO2016179554 A1 WO 2016179554A1
Authority
WO
WIPO (PCT)
Prior art keywords
pharmaceutically acceptable
acceptable salt
alkyl
membered
oxadiazol
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2016/031335
Other languages
English (en)
French (fr)
Inventor
Celia Dominguez
Michel C. Maillard
Alan F. HAUGHAN
Amanda VAN DE POËL
Andrew J. STOTT
Christopher A. LUCKHURST
Elizabeth A. Saville-Stones
Grant Wishart
Michael Wall
Perla Breccia
Rebecca E. Jarvis
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
CHDI Foundation Inc
Original Assignee
CHDI Foundation Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority to CA2984618A priority Critical patent/CA2984618C/en
Priority to KR1020177034461A priority patent/KR20180002729A/ko
Priority to JP2017557324A priority patent/JP6805172B2/ja
Priority to EA201792247A priority patent/EA036965B1/ru
Priority to EP16790203.0A priority patent/EP3291810B1/en
Priority to MX2017014300A priority patent/MX378983B/es
Priority to BR112017023711-3A priority patent/BR112017023711B1/pt
Priority to CN201680040061.8A priority patent/CN107735088B/zh
Priority to AU2016258188A priority patent/AU2016258188B2/en
Application filed by CHDI Foundation Inc filed Critical CHDI Foundation Inc
Publication of WO2016179554A1 publication Critical patent/WO2016179554A1/en
Priority to IL255448A priority patent/IL255448B2/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

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Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D271/00Heterocyclic compounds containing five-membered rings having two nitrogen atoms and one oxygen atom as the only ring hetero atoms
    • C07D271/02Heterocyclic compounds containing five-membered rings having two nitrogen atoms and one oxygen atom as the only ring hetero atoms not condensed with other rings
    • C07D271/061,2,4-Oxadiazoles; Hydrogenated 1,2,4-oxadiazoles
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D413/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D413/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings
    • C07D413/12Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings linked by a chain containing hetero atoms as chain links
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
    • A61K31/4245Oxadiazoles
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00Drugs for disorders of the nervous system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00Drugs for disorders of the nervous system
    • A61P25/14Drugs for disorders of the nervous system for treating abnormal movements, e.g. chorea, dyskinesia
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00Drugs for disorders of the nervous system
    • A61P25/28Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems

Definitions

  • Also provided is a method for treating a condition or disorder mediated by at least one histone deacetylase in a patient in need thereof comprising administering to the patient a therapeutically effective amount of a compound, or a pharmaceutically acceptable salt thereof, described herein.
  • haloalkyl denotes an C 1-6 alkyl group wherein the alkyl is substituted with one halogen up to fully substituted and a fully substituted C 1-6 haloalkyl can be represented by the formula C n L2 n+ i wherein L is a halogen and "n" is 1, 2, 3 or 4; when more than one halogen is present then they may be the same or different and selected from the group consisting of F, CI, Br and I, such as F.
  • heterobicyclyl ring systems including a spirocycle include: l-oxa-5- azaspiro[3.3]heptan-5-yl, l-oxa-6-azaspiro[3.3]heptan-6-yl, 6-oxa-l-azaspiro[3.3]heptan- l- yl, 2-oxa-6-azaspiro[3.3]heptan-6-yl, l,5-diazaspiro[3.3]heptan-l-yl, 1,6- diazaspiro[3.3]heptan-6-yl, l,6-diazaspiro[3.3]heptan- l-yl, 2,6-diazaspiro[3.3]heptan-2-yl, 1- oxa-5-azaspiro[3.4]octan-5-yl, l-oxa-6-azaspiro[3.4]octan-6-yl, 2-oxa
  • histone deacetylase and "HDAC” are intended to refer to any one of a family of enzymes that remove N e -acetyl groups from the ⁇ -amino groups of lysine residues of a protein (for example, a histone, or tubulin). Unless otherwise indicated by context, the term “histone” is meant to refer to any histone protein, including HI, H2A, H2B, H3, H4, and H5, from any species. In some embodiments, the histone deacetylase is a human HDAC, including, but not limited to, HDAC-4, HDAC-5, HDAC-6, HDAC-7, HDAC-9, and HDAC- 10.
  • R 3 and R 4 together with the nitrogen atom to which they are attached, form a 4 or 7-membered heteromonocyclic group optionally substituted with one to five substituents each independently selected from: C 1 -C 3 alkoxy, C 1 -C 3 alkyl, C 1 -C 3 haloalkoxy, C 1 -C 3 haloalkyl, 3 or 4-membered cycloalkoxy, 3 or 4-membered cycloalkyl, 3 or 4-membered heterocycloalkyl, aryl, and heteroaryl, wherein aryl and heteroaryl are optionally further substituted with one to five substituents each independently selected from C 1 -C 3 alkyl, C 1 -C 3 haloalkyl, and halo.
  • R 3 and R 4 are as described herein. Also provided is a compound selected from:
  • a method of treating a hematological disorder mediated by HDAC in a subject in need of such a treatment comprising administering to the subject a therapeutically effective amount of at least one compound, or pharmaceutically acceptable salt thereof, described herein.
  • packaged pharmaceutical compositions are also provided. Such packaged pharmaceutical compositions. Such packaged pharmaceutical compositions.
  • Step 4 (R)-N-( l-Cyclopropyl-2-(pyrrolidin-l-yl)ethyl)-4-(5-(trifluoromethyl)- 1,2,4- oxadiazol-3 -yl)benzamide
  • Step 4 ( ?)-N-(l-(3,4-Dihydroisoquinolin-2(lH)-yl)propan-2-yl)-4-(5-(trifluoromethyl)-l,2,4- oxadiazol-3 -yl)benzamide
  • Step 2 ( ?)-l-(Azepan-l-yl)propan-2-amine
  • Step 2 ( ?)-l-((1 ?,5S)-3-Azabicyclo[3.2.1]octan-3-yl)propan-2-amine
  • Step 5 tert-ButyX ((2 ?)-l-(6,6-dimethyl-3-azabicyclo[3.1.0]hexan-3-yl)propan-2- yl)carbamate
  • the plate is incubated for 15 minutes at 37 °C.
  • the reaction is then stopped by adding 25 ⁇ ⁇ of 3x (30 ⁇ ) developer/stop solution to the assay plates using either the Bravo, Janus or a 16-channel Matrix multi-channel pipette.
  • the assay plate is then shaken for 2 minutes on an orbital shaker at 900 rpm.
  • the assay plate is incubated at 37 °C for 1 hour in a tissue culture incubator followed by shaking for 1 minute at maximum rpm on an orbital shaker.
  • the fluorescence is measured (Excitation: 355 nm, Emission: 460 nm) using PerkinElmer EnVision in top read mode.
  • Assay 5 ⁇ ⁇ of each solution of 1 :20 diluted compound from above was transferred to the Greiner microtitre assay plates with 75,000 cells/well using the Bravo. Cells were then incubated for 2 hours at 37 °C and 5% C0 2 . The assay was then started by adding 10 ⁇ ⁇ of 5x (500 ⁇ ) substrate to the assay plate using either the Bravo or 16-channel Matrix multichannel pipette. The cells were then incubated for 3 hours at 37°C and 5% C0 2 . Next, 25 ⁇ ⁇ of 3x lysis buffer was added to each well using either the 125 ⁇ ⁇ 16 channel pipette or the Bravo.

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Veterinary Medicine (AREA)
  • Public Health (AREA)
  • Medicinal Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Animal Behavior & Ethology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Engineering & Computer Science (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Neurosurgery (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biomedical Technology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Neurology (AREA)
  • Epidemiology (AREA)
  • Psychology (AREA)
  • Psychiatry (AREA)
  • Hospice & Palliative Care (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Medicines Containing Material From Animals Or Micro-Organisms (AREA)
  • Acyclic And Carbocyclic Compounds In Medicinal Compositions (AREA)
  • Plural Heterocyclic Compounds (AREA)
  • Nitrogen Condensed Heterocyclic Rings (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Immobilizing And Processing Of Enzymes And Microorganisms (AREA)
PCT/US2016/031335 2015-05-07 2016-05-06 Histone deacetylase inhibitors and compositions and methods of use thereof Ceased WO2016179554A1 (en)

Priority Applications (10)

Application Number Priority Date Filing Date Title
CN201680040061.8A CN107735088B (zh) 2015-05-07 2016-05-06 组蛋白脱乙酰酶抑制剂及其组合物和使用方法
KR1020177034461A KR20180002729A (ko) 2015-05-07 2016-05-06 히스톤 탈아세틸효소 억제제 및 그것의 조성물 및 사용 방법
JP2017557324A JP6805172B2 (ja) 2015-05-07 2016-05-06 ヒストンデアセチラーゼ阻害薬及び組成物並びにそれらの使用の方法
EA201792247A EA036965B1 (ru) 2015-05-07 2016-05-06 Ингибиторы деацетилаз гистонов и композиции и способы их применения
EP16790203.0A EP3291810B1 (en) 2015-05-07 2016-05-06 Histone deacetylase inhibitors and compositions and methods of use thereof
CA2984618A CA2984618C (en) 2015-05-07 2016-05-06 Histone deacetylase inhibitors and compositions and methods of use thereof
BR112017023711-3A BR112017023711B1 (pt) 2015-05-07 2016-05-06 Inibidores de histona deacetilase e composições e métodos de uso dos mesmos
MX2017014300A MX378983B (es) 2015-05-07 2016-05-06 Inhibidores de histona deacetilasa y composiciones y metodos para el uso de los mismos.
AU2016258188A AU2016258188B2 (en) 2015-05-07 2016-05-06 Histone deacetylase inhibitors and compositions and methods of use thereof
IL255448A IL255448B2 (en) 2015-05-07 2017-11-06 Inhibitors of histone deacetylase and their compositions and methods of use

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201562158363P 2015-05-07 2015-05-07
US62/158,363 2015-05-07

Publications (1)

Publication Number Publication Date
WO2016179554A1 true WO2016179554A1 (en) 2016-11-10

Family

ID=57218014

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2016/031335 Ceased WO2016179554A1 (en) 2015-05-07 2016-05-06 Histone deacetylase inhibitors and compositions and methods of use thereof

Country Status (11)

Country Link
US (2) US10053434B2 (enExample)
EP (1) EP3291810B1 (enExample)
JP (1) JP6805172B2 (enExample)
KR (1) KR20180002729A (enExample)
CN (1) CN107735088B (enExample)
AU (1) AU2016258188B2 (enExample)
CA (1) CA2984618C (enExample)
EA (1) EA036965B1 (enExample)
IL (1) IL255448B2 (enExample)
MX (1) MX378983B (enExample)
WO (1) WO2016179554A1 (enExample)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11938134B2 (en) 2017-03-10 2024-03-26 Eikonizo Therapeutics, Inc. Metalloenzyme inhibitor compounds

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2984621C (en) 2015-05-07 2023-09-26 Chdi Foundation, Inc. Histone deacetylase inhibitors and compositions and methods of use thereof
CA2984618C (en) * 2015-05-07 2024-01-09 Chdi Foundation, Inc. Histone deacetylase inhibitors and compositions and methods of use thereof
US10757941B2 (en) * 2016-07-22 2020-09-01 Syngenta Participations Ag Microbiocidal oxadiazole derivatives
CN109627207A (zh) * 2018-12-17 2019-04-16 天津药明康德新药开发有限公司 一种3-(二氟甲氧基)哌啶盐酸盐的制备方法
WO2022174193A1 (en) * 2021-02-15 2022-08-18 The Research Foundation For The State University Of New York Radiolabeled compositions and methods of use thereof

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WO2013006408A1 (en) * 2011-07-01 2013-01-10 Tempero Pharmaceuticals, Inc. Compounds and methods
WO2013008162A1 (en) 2011-07-08 2013-01-17 Novartis Ag Novel trifluoromethyl-oxadiazole derivatives and their use in the treatment of disease
WO2013009830A1 (en) * 2011-07-13 2013-01-17 Tempero Pharmaceuticals, Inc. Methods of treatment
WO2013033085A1 (en) * 2011-08-30 2013-03-07 Stephen Martin Courtney Kynurenine-3-monooxygenase inhibitors, pharmaceutical compositions, and methods of use thereof
US20150057238A1 (en) * 2012-04-05 2015-02-26 Chdi Foundation, Inc. Kynurenine-3-monooxygenase inhibitors, pharmaceutical compositions, and methods of use thereof

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ES2462341T3 (es) 2004-12-10 2014-05-22 Msd Italia S.R.L. Derivados heterocíclicos como inhibidores de histona desacetilasas (HDAC)
WO2011088181A1 (en) 2010-01-13 2011-07-21 Tempero Pharmaceuticals, Inc. Compounds and methods
WO2013009810A1 (en) 2011-07-13 2013-01-17 Tempero Pharmaceuticals, Inc. Methods of treatment
WO2013066833A1 (en) * 2011-10-31 2013-05-10 Glaxosmithkline Llc Compounds and methods to inhibit histone deacetylase (hdac) enzymes
WO2013066835A2 (en) * 2011-10-31 2013-05-10 Glaxosmithkline Llc Compounds and methods
MX2014006409A (es) * 2011-11-28 2014-07-30 Novartis Ag Novedosos derivados de trifluoro-metil-oxadiazol y su uso en el tratamiento de enfermedades.
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CA2984621C (en) 2015-05-07 2023-09-26 Chdi Foundation, Inc. Histone deacetylase inhibitors and compositions and methods of use thereof
CN107980040B (zh) 2015-07-27 2021-11-26 株式会社钟根堂 作为组蛋白去乙酰酶6抑制剂的1,3,4-噁二唑磺酰胺衍生物及含其的医药组合物
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WO2013008162A1 (en) 2011-07-08 2013-01-17 Novartis Ag Novel trifluoromethyl-oxadiazole derivatives and their use in the treatment of disease
WO2013009830A1 (en) * 2011-07-13 2013-01-17 Tempero Pharmaceuticals, Inc. Methods of treatment
WO2013033085A1 (en) * 2011-08-30 2013-03-07 Stephen Martin Courtney Kynurenine-3-monooxygenase inhibitors, pharmaceutical compositions, and methods of use thereof
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Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11938134B2 (en) 2017-03-10 2024-03-26 Eikonizo Therapeutics, Inc. Metalloenzyme inhibitor compounds
US12370194B2 (en) 2017-03-10 2025-07-29 Eikonizo Therapeutics, Inc. Metalloenzyme inhibitor compounds

Also Published As

Publication number Publication date
CN107735088A (zh) 2018-02-23
US20190202795A1 (en) 2019-07-04
JP2018515489A (ja) 2018-06-14
US10053434B2 (en) 2018-08-21
HK1252487A1 (en) 2019-05-24
CA2984618C (en) 2024-01-09
EP3291810A1 (en) 2018-03-14
EP3291810B1 (en) 2022-08-10
CN107735088B (zh) 2021-11-02
BR112017023711A2 (pt) 2018-07-17
IL255448A0 (en) 2017-12-31
EA201792247A1 (ru) 2018-06-29
EP3291810A4 (en) 2018-11-07
KR20180002729A (ko) 2018-01-08
AU2016258188B2 (en) 2021-08-26
MX378983B (es) 2025-03-10
CA2984618A1 (en) 2016-11-10
IL255448B2 (en) 2023-07-01
IL255448B1 (en) 2023-03-01
JP6805172B2 (ja) 2020-12-23
US20160326124A1 (en) 2016-11-10
AU2016258188A1 (en) 2017-11-23
EA036965B1 (ru) 2021-01-20
MX2017014300A (es) 2018-08-09

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