WO2011056806A1 - Process for the preparation of pyrazinone thrombin inhibitor and its intermediates - Google Patents

Process for the preparation of pyrazinone thrombin inhibitor and its intermediates Download PDF

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Publication number
WO2011056806A1
WO2011056806A1 PCT/US2010/055176 US2010055176W WO2011056806A1 WO 2011056806 A1 WO2011056806 A1 WO 2011056806A1 US 2010055176 W US2010055176 W US 2010055176W WO 2011056806 A1 WO2011056806 A1 WO 2011056806A1
Authority
WO
WIPO (PCT)
Prior art keywords
compound
formula
difluoro
fluoropyridine
preparation
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2010/055176
Other languages
English (en)
French (fr)
Inventor
Reguri Buchi Reddy
Upparapalli Sampathkumar
Nilam Sahu
Javvaji Karunakara Rao
Gade Brahma Reddu
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Diakron Pharmaceuticals Inc
Original Assignee
Diakron Pharmaceuticals Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Diakron Pharmaceuticals Inc filed Critical Diakron Pharmaceuticals Inc
Priority to AU2010315338A priority Critical patent/AU2010315338A1/en
Priority to CA2778922A priority patent/CA2778922A1/en
Priority to EP10828989.3A priority patent/EP2496087A4/en
Priority to CN2010800499062A priority patent/CN102711481A/zh
Priority to RU2012118499/04A priority patent/RU2012118499A/ru
Priority to MX2012005165A priority patent/MX2012005165A/es
Priority to JP2012537955A priority patent/JP2013510159A/ja
Publication of WO2011056806A1 publication Critical patent/WO2011056806A1/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

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Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/4965Non-condensed pyrazines
    • A61K31/497Non-condensed pyrazines containing further heterocyclic rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/505Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
    • A61K31/506Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P7/00Drugs for disorders of the blood or the extracellular fluid
    • A61P7/02Antithrombotic agents; Anticoagulants; Platelet aggregation inhibitors
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07BGENERAL METHODS OF ORGANIC CHEMISTRY; APPARATUS THEREFOR
    • C07B61/00Other general methods

Definitions

  • Described herein is an improved process for the preparation of 3-fluoro-2-pyridyl methyl-3-(2,2-difluoro-2-(2-pyridyl)ethylamino)-6-chloropyrazin-2-one-l-acetamide of compound of formula (I).
  • the improvement comprises the preparation of intermediates namely, 2-aminomethyl-3-fluoropyridine or its salt (Kl) and 2,2-difluoro-2-(2-pyridyl) ethylamine or its salt (K2).
  • the present invention relates to a simple, commercially viable and industrially scalable process for the preparation of compound of the formula (I) and its intermediates, which involves the use of cost effective raw materials, simple isolation of the product, purification and work-up.
  • the present invention also relates to a simple and industrially scalable process for the preparation of compound of formula (I) and its intermediates, which avoids chromatographic purification techniques.
  • the present invention provides an improved process for the preparation of com ound of the formula (I).
  • the invention comprises processes for making key intermediates namely, 2- aminomethyl-3-fluoropyridine as a hydrochloride salt (Kl) and 2,2-difluoro-2-(2- pyridyl)ethylamine as a benzenesulfonic acid salt (K2).
  • the intermediates (Kl) and (K2) are used in the preparation of compound of formula (I), thrombin inhibitor.
  • a process for the preparation of 2-aminomethyl-3- fluoropyridine as a hydrochloride salt (Kl) is provided.
  • a process for preparing 2-aminomethyl-3-fluoropyridine.2HCl comprises reduction of 3-fluoropyridine-2-carbonitrile of a compound of formula (D) with the reducing agent H 2 /Raney Ni in the presence of acetic acid or trifluoroacetic acid.
  • the reported processes use expensive H 2 /Pd/C that is replaced with cost-effective Raney Nickel.
  • the synthetic scheme for the preparation of 2-aminomethyl-3-fluoropyridine.2HCl is depicted in Scheme 1 as follows.
  • a process for the preparation of 2,2-difluoro-2-(2- pyridyl)ethylamine as a benzenesulfonic acid (BSA) salt (K2) is provided (Scheme 2).
  • the improved process utilizes p-toluenesulfonyl chloride (pTsCl or Tosyl chloride) in the preparation of a tosylate or mesylate (J) from the corresponding difluoro alcohol (H).
  • pTsCl or Tosyl chloride p-toluenesulfonyl chloride
  • Triflic anhydride was used previously in place of low cost pTsCl or MsCl.
  • a process for purifying 3-fluoro-2-pyridylmethyl-3-(2,2- difluoro-2-(2-pyridyl)ethylamino)-6-chloropyrazin-2-one-l-acetamide, a compound of formula (I), using organic solvents including but not limited to ketones, alcohols, esters, ethers, hydrocarbons, halogenated solvents, and the like or a mixture thereof is provided.
  • Ketones include, but are not limited to, acetone, butanone and the like.
  • Alcohols include, but are not limited to, methanol, ethanol, n-propanol, isopropanol (IPA), n-butanol, t- butanol, hexanol, isoamyl alcohol and the like.
  • Esters include, but are not limited to, ethyl acetate, methyl acetate, isopropyl acetate and the like.
  • Ethers include, but are not limited to, diisopropyl ether (IPE), methyl t-butyl ether (MTBE) and the like.
  • Hydrocarbons include, but are not limited to, hexane, heptane, cyclohexane, decalin, pentane and the like.
  • Halogenated solvents include, but not limited to, dichloromethane (MDC), 1,2-dichloroethane and the like or mixture thereof, preferably acetone, isopropyl alcohol or mixtures thereof.
  • salts used herein includes inorganic acids such as hydrochloride (hydrochloric), hydrobromide (hydrobromic), sulfuric, sulfamic, phosphoric, nitric and the like, or quaternary ammonium salts, which are formed, e.g., from inorganic or organic acids or bases.
  • inorganic acids such as hydrochloride (hydrochloric), hydrobromide (hydrobromic), sulfuric, sulfamic, phosphoric, nitric and the like, or quaternary ammonium salts, which are formed, e.g., from inorganic or organic acids or bases.
  • acid addition salts include acetate, adipate, alginate, aspartate, benzoate, benzenesulphonate, bisulfate, butyrate, citrate, camphorate, camphorsulfonate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, fumarate, glucoheptanoate, glycerophosphate, hemisulfate, heptanoate, hexanoate, hydrochloride, hydrobromide, hydroiodide, 2-hydroxyethanesulfonate, lactate, maleate, methanesulfonate, toluenesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oxalate, pamoate, pectinate, persulfate, 3-phenylpropionate, picrate, pivalate, propionate,
  • Solvates are addition complexes in which a compound is combined with a solvent in some fixed proportion.
  • Solvents include, but are not limited to water, methanol, ethanol, 1-propanol, isopropanol, 1-butanol, isobutanol, i-butanol, acetone, methyl ethyl ketone, acetonitrile, ethyl acetate, benzene, toluene, xylene, ethylene glycol, dichloromethane, 1,2-dichloroethane, N-methylformamide, ⁇ , ⁇ -dimethylformamide, N- methylacetamide, pyridine, dioxane, diethyl ether and the like. Hydrates are solvates in which the solvent is water. It is to be understood that the definition of the compounds or intermediates of the present invention encompasses all possible hydrates and solvates, in any proportion.
  • thromboin inhibition is used for anticoagulant therapy in individuals having thrombotic conditions, and whenever inhibition of blood coagulation is required such as to prevent coagulation of stored whole blood and to prevent coagulation in other biological samples for testing or storage. Therefore, thrombin inhibitors are added to any medium containing or suspected of containing thrombin and in which it is desired that blood coagulation be inhibited.
  • the present invention provides an improved process for the preparation of compound of formula (I); an improved process for the preparation of key intermediates of the compound of formula (I); and/or a pharmaceutical composition comprising the compound; and/or a compound for inhibiting thrombin; and/or an improved method for inhibiting thrombin in blood.
  • Step-1 Lithium 3-fluoropyridin -2-carboxylate (B)
  • the RM was cooled to -75 °C, then 10 g of 3-fluoropyridine (in 10 mL of MTBE) was added dropwise while maintaining the temperature in the range of - 75 °C to - 70 °C.
  • the RM was stirred at the same temperature for 4 hours.
  • 100 mL of tetrahydrofuran (THF) was taken and cooled to - 70 °C followed by bubbling of C0 2 gas for 1 hour.
  • lithiated 3-fluoropyridine solution (mixture of 3- fluoropyridine + n-BuLi + TMEDA in MTBE) was added dropwise using cannula maintaining the reaction temperature below -70 °C (- 70 °C to - 60 °C). Bubbling of C0 2 gas was continued for another hour and then the reaction temperature was slowly brought to +30 °C. The resulting solid was filtered, dried and washed with 100 mL of 1:1 THF: MTBE, then vacuum dried at 45 °C, resulting in 14.5 g of the titled compound.
  • the RM temperature was brought to 10 to 15 °C and maintained for 30 minutes.
  • the RM was filtered, and the solid was washed with 5 mL of cold IPA, and dried under vacuum at 40 °C, resulting in 3.8 g of l-(3-fluoropyridin-2-yl)methanamine dihydrochloride salt (Kl).
  • the RM was quenched by adding saturated ammonium chloride solution at 0-5 °C and the volume of reaction mixture was reduced to half by distilling under vacuum.
  • the solution was basified with 50% NaOH solution and extracted with MTBE.
  • Step-4 Preparation of 2,2-Difluoro-2-pyridin-2-ylethanamine benzenesulfonate salt
  • Example 3 Process for purifying the compound of formula (I).

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Veterinary Medicine (AREA)
  • Medicinal Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Animal Behavior & Ethology (AREA)
  • General Health & Medical Sciences (AREA)
  • Public Health (AREA)
  • Epidemiology (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Diabetes (AREA)
  • Hematology (AREA)
  • Pyridine Compounds (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Plural Heterocyclic Compounds (AREA)
  • Catalysts (AREA)
  • Low-Molecular Organic Synthesis Reactions Using Catalysts (AREA)
PCT/US2010/055176 2009-11-03 2010-11-02 Process for the preparation of pyrazinone thrombin inhibitor and its intermediates Ceased WO2011056806A1 (en)

Priority Applications (7)

Application Number Priority Date Filing Date Title
AU2010315338A AU2010315338A1 (en) 2009-11-03 2010-11-02 Process for the preparation of pyrazinone thrombin inhibitor and its intermediates
CA2778922A CA2778922A1 (en) 2009-11-03 2010-11-02 Process for the preparation of pyrazinone thrombin inhibitor and its intermediates
EP10828989.3A EP2496087A4 (en) 2009-11-03 2010-11-02 METHOD FOR PRODUCING A PYRAZINONE THROMBIN HEMMER AND INTERMEDIATE PRODUCTS THEREOF
CN2010800499062A CN102711481A (zh) 2009-11-03 2010-11-02 吡嗪酮凝血酶抑制剂及其中间体的制备方法
RU2012118499/04A RU2012118499A (ru) 2009-11-03 2010-11-02 Способ получения пиразинонового ингибитора тромбина и промежуточных соединений для его получения
MX2012005165A MX2012005165A (es) 2009-11-03 2010-11-02 Proceso para la preparacion de inhibidor de pirazinona trombina y sus intermediarios.
JP2012537955A JP2013510159A (ja) 2009-11-03 2010-11-02 ピラジノントロンビン阻害剤およびその中間体の製造方法

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
IN2663/CHE/2009 2009-11-03
IN2663CH2009 2009-11-03

Publications (1)

Publication Number Publication Date
WO2011056806A1 true WO2011056806A1 (en) 2011-05-12

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PCT/US2010/055176 Ceased WO2011056806A1 (en) 2009-11-03 2010-11-02 Process for the preparation of pyrazinone thrombin inhibitor and its intermediates

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US (1) US8541580B2 (enExample)
EP (1) EP2496087A4 (enExample)
JP (1) JP2013510159A (enExample)
KR (1) KR20120106727A (enExample)
CN (1) CN102711481A (enExample)
AU (1) AU2010315338A1 (enExample)
CA (1) CA2778922A1 (enExample)
MX (1) MX2012005165A (enExample)
RU (1) RU2012118499A (enExample)
WO (1) WO2011056806A1 (enExample)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR20140090663A (ko) 2011-11-07 2014-07-17 디아크론 파마슈티칼스, 인코포레이티드 직접 트롬빈 억제제의 연장 방출성 제형
RU2018119344A (ru) 2015-10-26 2019-11-28 Байер Кропсайенс Акциенгезельшафт Конденсированные бициклические гетероциклические производные в качестве средства для борьбы с вредителями
CN113710669A (zh) 2019-02-26 2021-11-26 拜耳公司 作为农药的稠合双环杂环衍生物
MX2021010217A (es) 2019-02-26 2021-09-21 Bayer Ag Derivados heterociclos biciclicos condensados como plaguicida.

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6147078A (en) * 1998-05-19 2000-11-14 Merck & Co., Inc. Pyrazinone thrombin inhibitors
WO2002046160A2 (en) * 2000-12-06 2002-06-13 Merck & Co., Inc. Process for making a thrombin inhibitor
US7456290B2 (en) * 2002-11-20 2008-11-25 Bayer Cropscience S.A. Process for the preparation of 2-aminomethylpyridine derivative

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
UA58636C2 (uk) * 1999-06-04 2003-08-15 Мерк Енд Ко., Інк. Піразинонові інгібітори тромбіну, фармацевтична композиція, спосіб інгібування утворення тромбів у крові, спосіб лікування станів, пов'язаних із тромбоутворенням

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6147078A (en) * 1998-05-19 2000-11-14 Merck & Co., Inc. Pyrazinone thrombin inhibitors
WO2002046160A2 (en) * 2000-12-06 2002-06-13 Merck & Co., Inc. Process for making a thrombin inhibitor
US7456290B2 (en) * 2002-11-20 2008-11-25 Bayer Cropscience S.A. Process for the preparation of 2-aminomethylpyridine derivative

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
See also references of EP2496087A4 *
WADE JR.: "Reactions of Alcohols, PowerPoint Presentation", ORGANIC CHEMISTRY, 2003, BLACKBURN, DALLAS COUNTY COMMUNITY COLLEGE DISTRICT, pages 1 - 37 *

Also Published As

Publication number Publication date
US8541580B2 (en) 2013-09-24
RU2012118499A (ru) 2013-12-10
EP2496087A1 (en) 2012-09-12
JP2013510159A (ja) 2013-03-21
MX2012005165A (es) 2012-08-08
AU2010315338A1 (en) 2012-05-24
US20110105753A1 (en) 2011-05-05
CA2778922A1 (en) 2011-05-12
KR20120106727A (ko) 2012-09-26
CN102711481A (zh) 2012-10-03
EP2496087A4 (en) 2013-06-19

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