RU2636460C2 - Системы и способы применения зависящего от вращения транскрипционного секвенирования - Google Patents

Системы и способы применения зависящего от вращения транскрипционного секвенирования Download PDF

Info

Publication number
RU2636460C2
RU2636460C2 RU2013142965A RU2013142965A RU2636460C2 RU 2636460 C2 RU2636460 C2 RU 2636460C2 RU 2013142965 A RU2013142965 A RU 2013142965A RU 2013142965 A RU2013142965 A RU 2013142965A RU 2636460 C2 RU2636460 C2 RU 2636460C2
Authority
RU
Russia
Prior art keywords
nucleic acid
sequencing
rna polymerase
interest
rotation
Prior art date
Application number
RU2013142965A
Other languages
English (en)
Russian (ru)
Other versions
RU2013142965A (ru
Inventor
Теофилос КОТСЕРОГЛОУ
Original Assignee
Ив Байомедикал, Инк.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ив Байомедикал, Инк. filed Critical Ив Байомедикал, Инк.
Publication of RU2013142965A publication Critical patent/RU2013142965A/ru
Application granted granted Critical
Publication of RU2636460C2 publication Critical patent/RU2636460C2/ru

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6874Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Genetics & Genomics (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Saccharide Compounds (AREA)
  • Pyrane Compounds (AREA)
RU2013142965A 2011-02-23 2012-02-23 Системы и способы применения зависящего от вращения транскрипционного секвенирования RU2636460C2 (ru)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US201161463850P 2011-02-23 2011-02-23
US61/463,850 2011-02-23
US201161574270P 2011-07-30 2011-07-30
US61/574,270 2011-07-30
PCT/US2012/026339 WO2012116191A1 (en) 2011-02-23 2012-02-23 Rotation-dependent transcriptional sequencing systems and methods of using

Publications (2)

Publication Number Publication Date
RU2013142965A RU2013142965A (ru) 2015-03-27
RU2636460C2 true RU2636460C2 (ru) 2017-11-23

Family

ID=45852700

Family Applications (1)

Application Number Title Priority Date Filing Date
RU2013142965A RU2636460C2 (ru) 2011-02-23 2012-02-23 Системы и способы применения зависящего от вращения транскрипционного секвенирования

Country Status (9)

Country Link
US (2) US8574840B2 (enExample)
EP (1) EP2678444B1 (enExample)
JP (1) JP6018092B2 (enExample)
KR (1) KR101924665B1 (enExample)
CN (1) CN103534357B (enExample)
AU (1) AU2012220546B2 (enExample)
CA (1) CA2827880A1 (enExample)
RU (1) RU2636460C2 (enExample)
WO (1) WO2012116191A1 (enExample)

Families Citing this family (28)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8775454B2 (en) 2008-07-29 2014-07-08 James L. Geer Phone assisted ‘photographic memory’
US9128981B1 (en) 2008-07-29 2015-09-08 James L. Geer Phone assisted ‘photographic memory’
JP6018092B2 (ja) 2011-02-23 2016-11-02 イブ バイオメディカル インコーポレイテッド 回転依存転写配列決定システムおよび使用方法
AU2014218911B2 (en) * 2013-02-20 2018-07-12 Eve Biomedical, Inc. Methods and compositions for nanostructure-based nucleic acid sequencing
US20160309068A1 (en) * 2014-01-06 2016-10-20 The Regents Of The University Of California Spatial frequency domain imaging using custom patterns
DK3460075T3 (da) 2014-07-15 2021-02-01 Illumina Inc Biokemisk aktiveret elektronisk anordning
SG11201708867UA (en) * 2015-04-30 2017-11-29 Curevac Ag Immobilized poly(n)polymerase
CN106991224A (zh) * 2017-03-27 2017-07-28 蔡彤� 一种芯片引线键合定位的建模方法及系统
US10344328B2 (en) 2017-11-17 2019-07-09 Ultima Genomics, Inc. Methods for biological sample processing and analysis
US11499962B2 (en) 2017-11-17 2022-11-15 Ultima Genomics, Inc. Methods and systems for analyte detection and analysis
US10957187B2 (en) * 2017-12-21 2021-03-23 Lumileds Llc Road lighting
US11798406B2 (en) * 2018-03-21 2023-10-24 Lumileds Llc Road lighting
US10704094B1 (en) 2018-11-14 2020-07-07 Element Biosciences, Inc. Multipart reagents having increased avidity for polymerase binding
US10512911B1 (en) 2018-12-07 2019-12-24 Ultima Genomics, Inc. Implementing barriers for controlled environments during sample processing and detection
US12239980B2 (en) 2018-12-07 2025-03-04 Ultima Genomics, Inc. Implementing barriers for controlled environments during sample processing and detection
US10852518B1 (en) 2019-03-14 2020-12-01 Ultima Genomics, Inc. Methods, devices, and systems for analyte detection and analysis
US10900078B2 (en) 2019-03-14 2021-01-26 Ultima Genomics, Inc. Methods, devices, and systems for analyte detection and analysis
US10830703B1 (en) 2019-03-14 2020-11-10 Ultima Genomics, Inc. Methods, devices, and systems for analyte detection and analysis
US11118223B2 (en) 2019-03-14 2021-09-14 Ultima Genomics, Inc. Methods, devices, and systems for analyte detection and analysis
US11609208B2 (en) 2019-04-12 2023-03-21 Western Digital Technologies, Inc. Devices and methods for molecule detection based on thermal stabilities of magnetic nanoparticles
CN113905822B (zh) * 2019-04-12 2023-09-22 西部数据技术公司 使用磁传感器阵列边合成边核酸测序
US11327073B2 (en) 2019-04-12 2022-05-10 Western Digital Technologies, Inc. Thermal sensor array for molecule detection and related detection schemes
US11112468B2 (en) 2019-04-12 2021-09-07 Western Digital Technologies, Inc. Magnetoresistive sensor array for molecule detection and related detection schemes
CN110376171B (zh) * 2019-07-15 2021-11-19 上海理工大学 应用于dPCR检测仪的透射式荧光检测成像系统
US11208682B2 (en) 2019-09-13 2021-12-28 Western Digital Technologies, Inc. Enhanced optical detection for nucleic acid sequencing using thermally-dependent fluorophore tags
US11060138B1 (en) 2020-01-17 2021-07-13 Element Biosciences, Inc. Nucleic acid sequencing systems
CN116802267A (zh) * 2020-10-23 2023-09-22 斯宾德尔生物科技公司 用于rna合成的组合物和方法
IL310281A (en) 2021-07-21 2024-03-01 Element Biosciences Inc Optical systems for nucleic acid sequencing and methods thereof

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
RU2143004C1 (ru) * 1993-09-27 1999-12-20 АРЧ Девелопмент Корпорейшн Способ определения последовательности нуклеиновой кислоты (варианты) и набор для использования при определении последовательности нуклеиновой кислоты
US6872816B1 (en) * 1996-01-24 2005-03-29 Third Wave Technologies, Inc. Nucleic acid detection kits
US20070077575A1 (en) * 2004-03-05 2007-04-05 Mcallister William T Use of rna polymerase as an information-dependent molecular motor
US20110008794A1 (en) * 1999-08-30 2011-01-13 The Government of USA represented by the Secretary of the Dept. of Health and Human Services High speed parallel molecular nucleic acid sequencing

Family Cites Families (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5693489A (en) 1984-03-30 1997-12-02 Associated Universities, Inc. Cloning and expression of the gene for bacteriophage T7 RNA polymerase
US6232075B1 (en) * 1998-12-14 2001-05-15 Li-Cor, Inc. Heterogeneous assay for pyrophosphate detection
US6529240B2 (en) * 1999-11-18 2003-03-04 Agilent Technologies, Inc. Random access memory integrated with CMOS sensors
US6548264B1 (en) * 2000-05-17 2003-04-15 University Of Florida Coated nanoparticles
JP2008507952A (ja) * 2004-03-05 2008-03-21 リサーチ ファウンデーション オブ ステイト ユニヴァーシティー オブ ニューヨーク 情報依存性分子モーターとしてのrnaポリメラーゼの使用
WO2007111924A2 (en) * 2006-03-23 2007-10-04 The Board Of Trustees Of The Leland Stanford Junior University Motion resolved molecular sequencing
AU2008331824B2 (en) * 2007-12-04 2014-07-24 Pacific Biosciences Of California, Inc. Alternate labeling strategies for single molecule sequencing
US8815576B2 (en) 2007-12-27 2014-08-26 Lawrence Livermore National Security, Llc. Chip-based sequencing nucleic acids
JP6018092B2 (ja) 2011-02-23 2016-11-02 イブ バイオメディカル インコーポレイテッド 回転依存転写配列決定システムおよび使用方法

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
RU2143004C1 (ru) * 1993-09-27 1999-12-20 АРЧ Девелопмент Корпорейшн Способ определения последовательности нуклеиновой кислоты (варианты) и набор для использования при определении последовательности нуклеиновой кислоты
US6872816B1 (en) * 1996-01-24 2005-03-29 Third Wave Technologies, Inc. Nucleic acid detection kits
US20110008794A1 (en) * 1999-08-30 2011-01-13 The Government of USA represented by the Secretary of the Dept. of Health and Human Services High speed parallel molecular nucleic acid sequencing
US20070077575A1 (en) * 2004-03-05 2007-04-05 Mcallister William T Use of rna polymerase as an information-dependent molecular motor

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
WESTOVER KD, et al., Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center, Cell, 2004, 119 (4), pp.481-489. ДМИТРИЕНКО Е.В., и др., Гибридизационный анализ нуклеиновых кислот с помощью олигонуклеотидных производных. II. Изотермическая амплификация сигнала при анализе ДНК методоом мини-секвенирования, Биоорганическая химия, 2010, том 36, No.6, с.802-814. *

Also Published As

Publication number Publication date
CA2827880A1 (en) 2012-08-30
US9657343B2 (en) 2017-05-23
CN103534357B (zh) 2016-05-18
CN103534357A (zh) 2014-01-22
EP2678444B1 (en) 2016-02-17
AU2012220546B2 (en) 2017-02-23
KR101924665B1 (ko) 2018-12-03
RU2013142965A (ru) 2015-03-27
EP2678444A1 (en) 2014-01-01
JP6018092B2 (ja) 2016-11-02
US8574840B2 (en) 2013-11-05
WO2012116191A1 (en) 2012-08-30
HK1187959A1 (zh) 2014-04-17
KR20140089308A (ko) 2014-07-14
US20140162275A1 (en) 2014-06-12
AU2012220546A1 (en) 2013-09-12
US20120214171A1 (en) 2012-08-23
JP2014506485A (ja) 2014-03-17

Similar Documents

Publication Publication Date Title
RU2636460C2 (ru) Системы и способы применения зависящего от вращения транскрипционного секвенирования
Pyrak et al. Surface enhanced Raman spectroscopy for DNA biosensors—How far are we?
Soares et al. Rolling circle amplification in integrated microsystems: An uncut gem toward massively multiplexed pathogen diagnostics and genotyping
Dubus et al. PCR-free DNA detection using a magnetic bead-supported polymeric transducer and microelectromagnetic traps
AU2014218911B2 (en) Methods and compositions for nanostructure-based nucleic acid sequencing
JP6620160B2 (ja) 単一細胞の迅速かつ正確な分注、視覚化及び解析のための方法
CN116323974A (zh) 多路复用covid-19锁式测定
JP2017533696A (ja) ナノ構造のアレイを使用するポリマーの効率的光学分析
CN105264088A (zh) 提高鉴定细胞中的多个表位的动态范围
CN107109472B (zh) 利用互相猝灭的荧光标记物的基于纳米孔的聚合物分析
Chun et al. Salmonella Typhimurium sensing strategy based on the loop-mediated isothermal amplification using retroreflective janus particle as a nonspectroscopic signaling probe
Alamri et al. Era of molecular diagnostics techniques before and after the COVID-19 pandemic
Qu et al. Real-time continuous identification of greenhouse plant pathogens based on recyclable microfluidic bioassay system
Azimzadeh et al. CRISPR-powered microfluidics in diagnostics: a review of main applications
JP2019054805A (ja) 核酸を配列決定する方法および装置
Yu et al. CRISPR-Cas-and aptamer-based systems for diagnosing pathogens: A Review
Presnova et al. Multiplex digital quantification of β-lactamase genes in antibiotic-resistant bacteria by counting gold nanoparticle labels on silicon microchips
Cui et al. Simultaneous and sensitive detection of dual DNA targets via quantum dot‐assembled amplification labels
HK1187959B (en) Rotation-dependent transcriptional sequencing systems and methods of using
Masoudi-Nejad et al. Emergence of Next-Generation Sequencing
Saunders Application of nanomaterials to arrays for infectious disease diagnosis

Legal Events

Date Code Title Description
MM4A The patent is invalid due to non-payment of fees

Effective date: 20180224