MX375564B - Detección de un ácido nucleico diana y variantes. - Google Patents

Detección de un ácido nucleico diana y variantes.

Info

Publication number
MX375564B
MX375564B MX2017014771A MX2017014771A MX375564B MX 375564 B MX375564 B MX 375564B MX 2017014771 A MX2017014771 A MX 2017014771A MX 2017014771 A MX2017014771 A MX 2017014771A MX 375564 B MX375564 B MX 375564B
Authority
MX
Mexico
Prior art keywords
detection
nucleic acid
variants
target nucleic
reaction
Prior art date
Application number
MX2017014771A
Other languages
English (en)
Other versions
MX2017014771A (es
Inventor
Anthony Miles George
Lao Hayamizu Saal
Original Assignee
Saga Diagnostics Ab
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Saga Diagnostics Ab filed Critical Saga Diagnostics Ab
Publication of MX2017014771A publication Critical patent/MX2017014771A/es
Publication of MX375564B publication Critical patent/MX375564B/es

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/686Polymerase chain reaction [PCR]
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2527/00Reactions demanding special reaction conditions
    • C12Q2527/107Temperature of melting, i.e. Tm
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2531/00Reactions of nucleic acids characterised by
    • C12Q2531/10Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
    • C12Q2531/107Probe or oligonucleotide ligation
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/159Microreactors, e.g. emulsion PCR or sequencing, droplet PCR, microcapsules, i.e. non-liquid containers with a range of different permeability's for different reaction components
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/112Disease subtyping, staging or classification
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/166Oligonucleotides used as internal standards, controls or normalisation probes

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • Pathology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Hospice & Palliative Care (AREA)
  • Oncology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

La presente invención se refiere a métodos altamente sensibles y específicos para la detección de ácidos nucleicos que, por ejemplo, son de utilidad para la detección de mutaciones raras o para la detección de variantes de baja abundancia en secuencias de ácidos nucleicos. Los métodos implican una reacción de polimerasa incremental asimétrica (AIPR) seguido por una reacción en cadena de la polimerasa (PCR) exponencial.
MX2017014771A 2015-05-18 2016-05-18 Detección de un ácido nucleico diana y variantes. MX375564B (es)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
SE1550629 2015-05-18
PCT/EP2016/061121 WO2016184902A1 (en) 2015-05-18 2016-05-18 Detection of target nucleic acid and variants

Publications (2)

Publication Number Publication Date
MX2017014771A MX2017014771A (es) 2018-08-15
MX375564B true MX375564B (es) 2025-03-06

Family

ID=56008652

Family Applications (1)

Application Number Title Priority Date Filing Date
MX2017014771A MX375564B (es) 2015-05-18 2016-05-18 Detección de un ácido nucleico diana y variantes.

Country Status (23)

Country Link
US (2) US11066707B2 (es)
EP (1) EP3298162B1 (es)
JP (1) JP6956012B2 (es)
KR (1) KR102377229B1 (es)
CN (1) CN107636167B (es)
AU (1) AU2016263457B2 (es)
CA (1) CA2984960C (es)
CY (1) CY1122788T1 (es)
DK (1) DK3298162T3 (es)
EA (1) EA038921B9 (es)
ES (1) ES2775551T3 (es)
HR (1) HRP20200321T1 (es)
HU (1) HUE048349T2 (es)
IL (1) IL255714B (es)
LT (1) LT3298162T (es)
MX (1) MX375564B (es)
PL (1) PL3298162T3 (es)
PT (1) PT3298162T (es)
RS (1) RS60032B1 (es)
SI (1) SI3298162T1 (es)
SM (1) SMT202000260T1 (es)
WO (1) WO2016184902A1 (es)
ZA (1) ZA201707740B (es)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
RS60032B1 (sr) * 2015-05-18 2020-04-30 Saga Diagnostics Ab Detekcija ciljne nukleinske kiseline i varijanti
WO2019144107A1 (en) * 2018-01-22 2019-07-25 Luminex Corporation Methods and compositions for discrete melt analysis
US20240279735A1 (en) * 2019-12-20 2024-08-22 Korea University Research And Business Foundation Primers for detecting trace amount of rare single- nucleotide variant and method for specifically and sensitively detecting trace amount of rare single-nucleotide variant by using same
CN116724124A (zh) * 2020-09-30 2023-09-08 李峰 一种用于dna单核苷酸变异检测的方法、探针及试剂盒及其应用
KR102616916B1 (ko) * 2021-05-11 2023-12-21 주식회사 애이마 발암성 돌연변이 유전자 검출용 가이드 rna 내지 이의 용도
GB202203187D0 (en) 2022-03-08 2022-04-20 Rarity Bioscience Ab Method of detection of a target nucleic acid sequence
US20230392212A1 (en) 2022-06-03 2023-12-07 Saga Diagnostics Ab Detection of target nucleic acids
US20230392199A1 (en) * 2022-06-03 2023-12-07 Saga Diagnostics Ab Detection of target nucleic acids with preamplification
CA3265949A1 (en) 2022-08-31 2024-03-07 Saga Diagnostics Ab DETECTION OF ESR1 VARIANT SEQUENCES
WO2024047168A1 (en) 2022-08-31 2024-03-07 Saga Diagnostics Ab Multi-vector detection of variant sequences
WO2024223698A1 (en) 2023-04-24 2024-10-31 Saga Diagnostics Ab Detection of variants

Family Cites Families (26)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US3996345A (en) 1974-08-12 1976-12-07 Syva Company Fluorescence quenching with immunological pairs in immunoassays
US4351760A (en) 1979-09-07 1982-09-28 Syva Company Novel alkyl substituted fluorescent compounds and polyamino acid conjugates
GB9812768D0 (en) 1998-06-13 1998-08-12 Zeneca Ltd Methods
US6440706B1 (en) * 1999-08-02 2002-08-27 Johns Hopkins University Digital amplification
US6548254B2 (en) 2000-04-28 2003-04-15 Gorilla Genomics, Inc. Methods and compositions for the manufacture of molecular beacons
US6887664B2 (en) * 2000-06-06 2005-05-03 Applera Corporation Asynchronous primed PCR
GB0127564D0 (en) 2001-11-16 2002-01-09 Medical Res Council Emulsion compositions
US7198897B2 (en) * 2001-12-19 2007-04-03 Brandeis University Late-PCR
AUPS076902A0 (en) * 2002-02-26 2002-03-21 Commonwealth Scientific And Industrial Research Organisation Novel selective polymerase chain reaction
US20040022764A1 (en) * 2002-07-31 2004-02-05 Hanan Polansky Inhibition of microcompetition with a foreign polynucleotide as treatment of chronic disease
JP4353504B2 (ja) * 2003-05-19 2009-10-28 キヤノン株式会社 核酸の増幅方法および標識化方法、これを用いた核酸検出方法
WO2006094360A1 (en) 2005-03-11 2006-09-14 Molecular Plant Breeding Nominees Ltd Method of amplifying nucleic acid
CA3027954C (en) * 2005-06-07 2021-11-02 Luminex Corporation Methods for detection and typing of nucleic acids
ES2547053T3 (es) * 2007-08-01 2015-10-01 Dana Farber Cancer Institute Enriquecimiento de una secuencia diana
CA3075139C (en) 2008-09-23 2022-04-12 Bio-Rad Laboratories, Inc. Droplet-based assay system
US8440406B2 (en) * 2009-10-23 2013-05-14 Luminex Corporation Amplification primers with non-standard bases for increased reaction specificity
EP2614157A4 (en) * 2010-09-08 2014-03-26 Univ Brandeis Compositions and methods for nucleic acid based diagnostic assays for variable sequence targets
CN103459612A (zh) * 2010-12-03 2013-12-18 布兰代斯大学 用于检测野生型群体中的核酸突变体的方法和试剂盒
EP3181704B1 (en) 2010-12-27 2021-01-27 Abbott Molecular Inc. Quantitating high titer samples by digital pcr
DK2691541T3 (en) * 2011-03-31 2018-01-22 Dana Farber Cancer Inst Inc PROCEDURE FOR ENRICHMENT OF SINGLE DRAWED MUTANTS SEQUENCES FROM A MIXTURE OF WILD TYPE AND MUTANTS
EP2702175B1 (en) * 2011-04-25 2018-08-08 Bio-Rad Laboratories, Inc. Methods and compositions for nucleic acid analysis
US9970052B2 (en) * 2012-08-23 2018-05-15 Bio-Rad Laboratories, Inc. Digital assays with a generic reporter
SG10201805453XA (en) * 2013-04-25 2018-08-30 Firefly Bioworks Inc Multiplexed analysis of target nucleic acids
EP3058099A4 (en) 2013-10-19 2017-06-28 TrovaGene, Inc. Detecting mutations in disease over time
JP2016535987A (ja) * 2013-10-20 2016-11-24 トローバジーン インコーポレイテッド 核酸配列の合成及び濃縮
RS60032B1 (sr) * 2015-05-18 2020-04-30 Saga Diagnostics Ab Detekcija ciljne nukleinske kiseline i varijanti

Also Published As

Publication number Publication date
SMT202000260T1 (it) 2020-07-08
PT3298162T (pt) 2020-03-26
IL255714A (en) 2018-01-31
IL255714B (en) 2020-09-30
LT3298162T (lt) 2020-03-10
MX2017014771A (es) 2018-08-15
EP3298162B1 (en) 2019-11-27
EA201792405A1 (ru) 2018-07-31
KR102377229B1 (ko) 2022-03-22
ES2775551T3 (es) 2020-07-27
AU2016263457B2 (en) 2020-08-27
DK3298162T3 (da) 2020-03-02
SI3298162T1 (sl) 2020-06-30
JP6956012B2 (ja) 2021-10-27
PL3298162T3 (pl) 2020-07-27
ZA201707740B (en) 2021-04-28
KR20180019585A (ko) 2018-02-26
RS60032B1 (sr) 2020-04-30
CA2984960C (en) 2022-10-04
AU2016263457A1 (en) 2017-12-07
CN107636167A (zh) 2018-01-26
WO2016184902A1 (en) 2016-11-24
US20180340230A1 (en) 2018-11-29
CN107636167B (zh) 2022-09-02
CY1122788T1 (el) 2021-05-05
EA038921B1 (ru) 2021-11-10
US20220056533A1 (en) 2022-02-24
BR112017024702A2 (pt) 2018-09-18
EP3298162A1 (en) 2018-03-28
HRP20200321T1 (hr) 2020-06-12
US11066707B2 (en) 2021-07-20
HUE048349T2 (hu) 2020-07-28
EA038921B9 (ru) 2021-12-06
CA2984960A1 (en) 2016-11-24
JP2018523970A (ja) 2018-08-30

Similar Documents

Publication Publication Date Title
MX375564B (es) Detección de un ácido nucleico diana y variantes.
IL286496A (en) A method for the detection and relative quantification of nucleic acid sequence, expression, variants, transition, copy number, or methylation changes, using a combination of nuclease, ligase, and polymerase reactions with protection against contamination
MX2017005159A (es) Composiciones y metodos para detectar un virus de rna.
GB2542929A (en) Ligation assays in liquid phase
CY1122975T1 (el) Συνθεσεις και μεθοδοι για την αναστολη της εκφρασης του γονιδιου alas1
BR112016019267B8 (pt) Método para construir um perfil de dna, biblioteca de ácido nucléico, método para construir uma biblioteca de ácido nucléico, pluralidade de iniciadores e kit
AR101943A1 (es) Métodos para detección de patógenos y control de enfermedades en carnes, plantas o partes de plantas
MX384970B (es) Detección de secuencias por objetivo de ácido nucleico usando diferentes temperaturas de detección.
MX2017001405A (es) Deteccion de acidos nucleicos diana mediante el uso de hibridacion.
BR112018011089A2 (pt) composições e métodos para a imuno-oncologia
EP4273264A3 (en) Improved methods for processing dna substrates
BR112017016080A2 (pt) polinucleotídeo, sistema crispr, dois polinucleotídeos e métodos de modificação de uma molécula, de redução de modificação fora do alvo e de aumento da modificação específica de alvo
MX2016007541A (es) Moléculas modificadas de ácido nucleico y usos de las mismas.
EP3169793A4 (en) Isothermal methods for amplifying nucleic acid samples
BR112018008541A2 (pt) método implementado por computador para determinar uma rota de transmissão de patógenos relacionados, mídia de armazenamento não transitório legível por computador e sistema implementado por computador para pré-formar uma análise de genoma
WO2015196128A3 (en) Alternative nucleic acid molecules and uses thereof
WO2015196130A3 (en) Alternative nucleic acid molecules and uses thereof
EA201692157A1 (ru) Синтез двухцепочечных нуклеиновых кислот
GB2537077A (en) Methods for sequencing nucleic acids
PL3529380T3 (pl) Sposoby chemicznej ligacji kwasów nukleinowych
WO2014143714A3 (en) Methods for one step nucleic acid amplification of non-eluted samples
MX2017001134A (es) Composiciones y metodos para la deteccion y analisis de tuberculosis micobacteriana.
WO2015153571A3 (en) Detection of dna methylation using combined nuclease ligation reactions
MX2017003475A (es) Metodos de diganostico y composiciones.
BR112017008393A2 (pt) aparelho e sistema para amplificação de ácido nucleico

Legal Events

Date Code Title Description
FG Grant or registration