KR20230049122A - 비호지킨 림프종의 검출 - Google Patents
비호지킨 림프종의 검출 Download PDFInfo
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- KR20230049122A KR20230049122A KR1020237008625A KR20237008625A KR20230049122A KR 20230049122 A KR20230049122 A KR 20230049122A KR 1020237008625 A KR1020237008625 A KR 1020237008625A KR 20237008625 A KR20237008625 A KR 20237008625A KR 20230049122 A KR20230049122 A KR 20230049122A
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| US5773258A (en) | 1995-08-25 | 1998-06-30 | Roche Molecular Systems, Inc. | Nucleic acid amplification using a reversibly inactivated thermostable enzyme |
| US5854033A (en) | 1995-11-21 | 1998-12-29 | Yale University | Rolling circle replication reporter systems |
| US5965408A (en) | 1996-07-09 | 1999-10-12 | Diversa Corporation | Method of DNA reassembly by interrupting synthesis |
| JP2001517925A (ja) | 1995-12-22 | 2001-10-09 | ベーリングウエルケ、アクティエンゲゼルシャフト | 核酸の均質増幅および検出 |
| US5985557A (en) | 1996-01-24 | 1999-11-16 | Third Wave Technologies, Inc. | Invasive cleavage of nucleic acids |
| EP0892808B1 (en) | 1996-04-12 | 2008-05-14 | PHRI Properties, Inc. | Detection probes, kits and assays |
| US5786146A (en) | 1996-06-03 | 1998-07-28 | The Johns Hopkins University School Of Medicine | Method of detection of methylated nucleic acid using agents which modify unmethylated cytosine and distinguishing modified methylated and non-methylated nucleic acids |
| US6017704A (en) | 1996-06-03 | 2000-01-25 | The Johns Hopkins University School Of Medicine | Method of detection of methylated nucleic acid using agents which modify unmethylated cytosine and distinguishing modified methylated and non-methylated nucleic acids |
| US6096273A (en) | 1996-11-05 | 2000-08-01 | Clinical Micro Sensors | Electrodes linked via conductive oligomers to nucleic acids |
| US6251594B1 (en) | 1997-06-09 | 2001-06-26 | Usc/Norris Comprehensive Cancer Ctr. | Cancer diagnostic method based upon DNA methylation differences |
| US6013459A (en) | 1997-06-12 | 2000-01-11 | Clinical Micro Sensors, Inc. | Detection of analytes using reorganization energy |
| DE19754482A1 (de) | 1997-11-27 | 1999-07-01 | Epigenomics Gmbh | Verfahren zur Herstellung komplexer DNA-Methylierungs-Fingerabdrücke |
| US6063573A (en) | 1998-01-27 | 2000-05-16 | Clinical Micro Sensors, Inc. | Cycling probe technology using electron transfer detection |
| AU753273B2 (en) | 1998-02-04 | 2002-10-10 | Variagenics, Inc. | Mismatch detection techniques |
| US6235502B1 (en) | 1998-09-18 | 2001-05-22 | Molecular Staging Inc. | Methods for selectively isolating DNA using rolling circle amplification |
| US7700324B1 (en) | 1998-11-03 | 2010-04-20 | The Johns Hopkins University School Of Medicine | Methylated CpG island amplification (MCA) |
| US7662594B2 (en) | 2002-09-20 | 2010-02-16 | New England Biolabs, Inc. | Helicase-dependent amplification of RNA |
| EP2354253A3 (en) | 2003-09-05 | 2011-11-16 | Trustees of Boston University | Method for non-invasive prenatal diagnosis |
| US8088976B2 (en) * | 2005-02-24 | 2012-01-03 | Monsanto Technology Llc | Methods for genetic control of plant pest infestation and compositions thereof |
| TR201910868T4 (tr) | 2006-02-02 | 2019-08-21 | Univ Leland Stanford Junior | Dijital analizle invazif olmayan fetal genetik tarama. |
| WO2009117327A2 (en) | 2008-03-15 | 2009-09-24 | Hologic, Inc. | Compositions and methods for analysis of nucleic acid molecules during amplification reactions |
| WO2010037001A2 (en) | 2008-09-26 | 2010-04-01 | Immune Disease Institute, Inc. | Selective oxidation of 5-methylcytosine by tet-family proteins |
| WO2011127136A1 (en) | 2010-04-06 | 2011-10-13 | University Of Chicago | Composition and methods related to modification of 5-hydroxymethylcytosine (5-hmc) |
| WO2012031329A1 (en) * | 2010-09-10 | 2012-03-15 | Murdoch Childrens Research Institute | Assay for detection and monitoring of cancer |
| US8361720B2 (en) | 2010-11-15 | 2013-01-29 | Exact Sciences Corporation | Real time cleavage assay |
| US8715937B2 (en) | 2010-11-15 | 2014-05-06 | Exact Sciences Corporation | Mutation detection assay |
| US8916344B2 (en) | 2010-11-15 | 2014-12-23 | Exact Sciences Corporation | Methylation assay |
| CN103649298A (zh) | 2011-05-12 | 2014-03-19 | 精密科学公司 | 核酸的分离 |
| US8808990B2 (en) | 2011-05-12 | 2014-08-19 | Exact Sciences Corporation | Serial isolation of multiple DNA targets from stool |
| CA2863215C (en) | 2012-01-30 | 2021-05-04 | Exact Sciences Corporation | Modification of dna on magnetic beads |
| AU2012388616A1 (en) * | 2012-08-31 | 2015-04-02 | National Defense Medical Center | Method for screening cancer |
| US9212392B2 (en) | 2012-09-25 | 2015-12-15 | Exact Sciences Corporation | Normalization of polymerase activity |
| WO2015066695A1 (en) | 2013-11-04 | 2015-05-07 | Exact Sciences Corporation | Multiple-control calibrators for dna quantitation |
| US9984201B2 (en) * | 2015-01-18 | 2018-05-29 | Youhealth Biotech, Limited | Method and system for determining cancer status |
| US11162139B2 (en) | 2016-03-02 | 2021-11-02 | Shanghai Epican Genetech Co. Ltd. | Method for genomic profiling of DNA 5-methylcytosine and 5-hydroxymethylcytosine |
| MX391039B (es) | 2016-04-07 | 2025-03-21 | Univ Leland Stanford Junior | Diagnostico no invasivo por medio de la secuenciacion del adn libre de celulas 5-hidroxi-metilado. |
| EP3481965A4 (en) * | 2016-07-06 | 2020-03-18 | Case Western Reserve University | METHOD AND COMPOSITIONS FOR DETECTING NEOPLASIA OF THE EYES AND / OR METAPLASIA OF THE EYES |
| JP7136899B2 (ja) | 2018-01-08 | 2022-09-13 | ルドウイグ インスティテュート フォー キャンサー リサーチ エルティーディー | シトシン修飾の、亜硫酸水素塩非含有、塩基分解能特定 |
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| EP4200445A1 (en) | 2023-06-28 |
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| EP4200445A4 (en) | 2025-08-27 |
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| WO2022040306A1 (en) | 2022-02-24 |
| CA3188230A1 (en) | 2022-02-24 |
| CN116670299A (zh) | 2023-08-29 |
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