KR20170091158A - 나노튜브를 이용하는 핵산 중합효소 입체구조적 변화의 검출 - Google Patents

나노튜브를 이용하는 핵산 중합효소 입체구조적 변화의 검출 Download PDF

Info

Publication number
KR20170091158A
KR20170091158A KR1020177019443A KR20177019443A KR20170091158A KR 20170091158 A KR20170091158 A KR 20170091158A KR 1020177019443 A KR1020177019443 A KR 1020177019443A KR 20177019443 A KR20177019443 A KR 20177019443A KR 20170091158 A KR20170091158 A KR 20170091158A
Authority
KR
South Korea
Prior art keywords
nucleic acid
nucleotide
thio
acid polymerase
molecule
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
KR1020177019443A
Other languages
English (en)
Korean (ko)
Inventor
필립 지 콜린스
그레고리 에이 웨이스
용기 최
티볼리 올센
Original Assignee
더 리젠츠 오브 더 유니버시티 오브 캘리포니아
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by 더 리젠츠 오브 더 유니버시티 오브 캘리포니아 filed Critical 더 리젠츠 오브 더 유니버시티 오브 캘리포니아
Publication of KR20170091158A publication Critical patent/KR20170091158A/ko
Ceased legal-status Critical Current

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/48Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving transferase
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/48Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving transferase
    • C12Q1/485Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving transferase involving kinase
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y207/00Transferases transferring phosphorus-containing groups (2.7)
    • C12Y207/07Nucleotidyltransferases (2.7.7)
    • C12Y207/07007DNA-directed DNA polymerase (2.7.7.7), i.e. DNA replicase
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
    • G01N27/26Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
    • G01N27/403Cells and electrode assemblies
    • G01N27/414Ion-sensitive or chemical field-effect transistors, i.e. ISFETS or CHEMFETS
    • G01N27/4146Ion-sensitive or chemical field-effect transistors, i.e. ISFETS or CHEMFETS involving nanosized elements, e.g. nanotubes, nanowires
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/483Physical analysis of biological material
    • G01N33/487Physical analysis of biological material of liquid biological material
    • G01N33/48707Physical analysis of biological material of liquid biological material by electrical means
    • G01N33/48721Investigating individual macromolecules, e.g. by translocation through nanopores
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/90Enzymes; Proenzymes
    • G01N2333/91Transferases (2.)
    • G01N2333/912Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • G01N2333/91205Phosphotransferases in general
    • G01N2333/91245Nucleotidyltransferases (2.7.7)
    • G01N2333/9125Nucleotidyltransferases (2.7.7) with a definite EC number (2.7.7.-)
    • G01N2333/9126DNA-directed DNA polymerase (2.7.7.7)

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • General Physics & Mathematics (AREA)
  • Nanotechnology (AREA)
  • Pathology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Electrochemistry (AREA)
  • Microelectronics & Electronic Packaging (AREA)
  • Biomedical Technology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
KR1020177019443A 2014-12-18 2015-12-17 나노튜브를 이용하는 핵산 중합효소 입체구조적 변화의 검출 Ceased KR20170091158A (ko)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201462093671P 2014-12-18 2014-12-18
US62/093,671 2014-12-18
PCT/US2015/066321 WO2016100635A1 (en) 2014-12-18 2015-12-17 Detection of nucleic acid polymerase conformational changes using a nanotube

Publications (1)

Publication Number Publication Date
KR20170091158A true KR20170091158A (ko) 2017-08-08

Family

ID=56127582

Family Applications (1)

Application Number Title Priority Date Filing Date
KR1020177019443A Ceased KR20170091158A (ko) 2014-12-18 2015-12-17 나노튜브를 이용하는 핵산 중합효소 입체구조적 변화의 검출

Country Status (10)

Country Link
US (1) US20180051316A1 (cg-RX-API-DMAC7.html)
EP (1) EP3234178A4 (cg-RX-API-DMAC7.html)
JP (1) JP2018500905A (cg-RX-API-DMAC7.html)
KR (1) KR20170091158A (cg-RX-API-DMAC7.html)
CN (2) CN109517878A (cg-RX-API-DMAC7.html)
AU (1) AU2015364602B2 (cg-RX-API-DMAC7.html)
CA (1) CA2971268A1 (cg-RX-API-DMAC7.html)
RU (1) RU2721965C2 (cg-RX-API-DMAC7.html)
SG (1) SG11201704862UA (cg-RX-API-DMAC7.html)
WO (2) WO2016100635A1 (cg-RX-API-DMAC7.html)

Families Citing this family (50)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR102796872B1 (ko) 2016-01-28 2025-04-15 로스웰 엠이 아이엔씨. 대규모 분자 전자소자 센서 어레이들을 이용하여 분석물들을 측정하는 방법들 및 장치
JP7080489B2 (ja) 2016-01-28 2022-06-06 ロズウェル バイオテクノロジーズ,インコーポレイテッド 超パラレルdna配列決定装置
JP6854532B2 (ja) 2016-02-09 2021-04-07 ロズウェル バイオテクノロジーズ,インコーポレイテッド 電子的、標識フリーのdnaおよびゲノムシークエンシング
US10597767B2 (en) 2016-02-22 2020-03-24 Roswell Biotechnologies, Inc. Nanoparticle fabrication
US9829456B1 (en) 2016-07-26 2017-11-28 Roswell Biotechnologies, Inc. Method of making a multi-electrode structure usable in molecular sensing devices
CN106244712B (zh) 2016-08-31 2019-11-19 北京大学 Dna测序方法
US20190376925A1 (en) * 2016-11-22 2019-12-12 Roswell Biotechnologies, Inc. Nucleic acid sequencing device containing graphene
KR102622275B1 (ko) 2017-01-10 2024-01-05 로스웰 바이오테크놀로지스 인코포레이티드 Dna 데이터 저장을 위한 방법들 및 시스템들
KR102601324B1 (ko) * 2017-01-19 2023-11-10 로스웰 바이오테크놀로지스 인코포레이티드 2차원 레이어 재료를 포함하는 솔리드 스테이트 시퀀싱 디바이스들
US10508296B2 (en) 2017-04-25 2019-12-17 Roswell Biotechnologies, Inc. Enzymatic circuits for molecular sensors
WO2018200687A1 (en) * 2017-04-25 2018-11-01 Roswell Biotechnologies, Inc. Enzymatic circuits for molecular sensors
EP4023764A3 (en) 2017-05-09 2022-09-21 Roswell Biotechnologies, Inc. Binding probe circuits for molecular sensors
EP3676389A4 (en) 2017-08-30 2021-06-02 Roswell Biotechnologies, Inc PROCESSIVE ENZYMATIC MOLECULAR ELECTRONIC SENSORS FOR STORING DNA DATA
KR20210135344A (ko) * 2017-09-15 2021-11-12 일루미나, 인코포레이티드 서열-검출 시스템의 조율 및 교정 특징
WO2019055867A1 (en) * 2017-09-15 2019-03-21 Illumina, Inc. SEQUENCE DETECTION SYSTEM
KR102717872B1 (ko) * 2017-10-10 2024-10-14 로스웰 엠이 아이엔씨. 무증폭 dna 데이터 저장을 위한 방법, 장치 및 시스템
KR20230169413A (ko) 2017-10-13 2023-12-15 노보 노르디스크 헬스 케어 악티엔게젤샤프트 Ldha의 발현을 억제하기 위한 방법 및 조성물
IL278769B2 (en) 2018-05-17 2025-06-01 Stuart Lindsay Device, system and method for direct electrical measurement of enzyme activity
WO2020101795A1 (en) 2018-11-15 2020-05-22 Omniome, Inc. Electronic detection of nucleic acid structure
GB2585608B (en) 2018-12-04 2021-11-03 Omniome Inc Mixed-phase fluids for nucleic acid sequencing and other analytical assays
EP3918329A4 (en) 2019-01-30 2023-02-08 Arizona Board of Regents on behalf of Arizona State University Bioelectronic circuits, systems and methods for preparing and using them
US11499189B2 (en) 2019-02-14 2022-11-15 Pacific Biosciences Of California, Inc. Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes
US20220145377A1 (en) * 2019-03-01 2022-05-12 Universal Sequencing Technology Corporation Device and Method for Biopolymer Identification
KR20220012920A (ko) * 2019-05-27 2022-02-04 유니버셜 시퀀싱 테크놀로지 코퍼레이션 핵산 서열 내의 구성요소를 확인하는 방법
CN114728996B (zh) 2019-09-10 2022-11-29 加利福尼亚太平洋生物科学股份有限公司 核苷酸的可逆修饰
DE202019106694U1 (de) 2019-12-02 2020-03-19 Omniome, Inc. System zur Sequenzierung von Nukleinsäuren in Fluidschaum
EP4100161B1 (en) 2020-02-04 2024-07-10 Pacific Biosciences of California, Inc. Flow cells and methods for their use
IL295828A (en) * 2020-02-28 2022-10-01 Univ Arizona State Methods for biopolymer flooring
US12298300B2 (en) 2020-04-17 2025-05-13 Arizona Board Of Regents On Behalf Of Arizona State University Single-molecule electronic sequence detector and methods of use
EP4158063A4 (en) 2020-05-29 2024-05-29 Arizona Board of Regents on behalf of Arizona State University BIOELECTRONIC DEVICES WITH PROGRAMMABLE ADAPTERS
EP4231174A3 (en) 2020-06-11 2023-11-01 Nautilus Subsidiary, Inc. Methods and systems for computational decoding of biological, chemical, and physical entities
KR20230118570A (ko) 2020-11-11 2023-08-11 노틸러스 서브시디어리, 인크. 강화된 결합 및 검출 특성을 갖는 친화성 시약
US20220227890A1 (en) 2021-01-21 2022-07-21 Nautilus Biotechnology, Inc. Systems and methods for biomolecule preparation
IL305336B2 (en) 2021-03-11 2025-09-01 Nautilus Subsidiary Inc Systems and methods for preserving biomolecules
CA3227872A1 (en) 2021-09-09 2023-03-16 James Henry JOLY Characterization and localization of protein modifications
AU2022352593A1 (en) 2021-09-22 2024-02-15 Nautilus Subsidiary, Inc. Methods and systems for determining polypeptide interactions
US20230149883A1 (en) 2021-11-03 2023-05-18 Nautilus Biotechnology, Inc. Systems and methods for surface structuring
AU2023241893A1 (en) 2022-03-29 2024-09-26 Nautilus Subsidiary, Inc. Integrated arrays for single-analyte processes
CN117174183B (zh) * 2022-05-27 2025-11-25 中国科学院大连化学物理研究所 基于多尺度分子动力学模拟的rna结构预测方法
EP4544077A1 (en) 2022-06-21 2025-04-30 Nautilus Subsidiary, Inc. Method for detecting analytes at sites of optically non-resolvable distances
WO2024073599A1 (en) 2022-09-29 2024-04-04 Nautilus Subsidiary, Inc. Preparation of array surfaces for single-analyte processes
EP4630816A1 (en) 2022-12-09 2025-10-15 Nautilus Subsidiary, Inc. A method comprising performing on a single-analyte array at least 50 cycles of a process
EP4634285A1 (en) 2022-12-15 2025-10-22 Nautilus Subsidiary, Inc. Inhibition of photon phenomena on single molecule arrays
WO2024206122A1 (en) 2023-03-24 2024-10-03 Nautilus Subsidiary, Inc. Improved transfer of nanoparticles to array surfaces
US20240394902A1 (en) 2023-05-24 2024-11-28 Nautilus Subsidiary, Inc. Systems and methods for machine vision
US20250066841A1 (en) 2023-08-24 2025-02-27 Nautilus Subsidiary, Inc. Compositions and methods for detecting binding interactions under equilibrium or non-equilibrium conditions
WO2025128588A1 (en) 2023-12-11 2025-06-19 Nautilus Subsidiary, Inc. Methods and compositions of particle-based arrays
US20250205706A1 (en) 2023-12-20 2025-06-26 Nautilus Subsidiary, Inc. Fluidic devices for single-analyte assays
US20250298016A1 (en) 2024-03-22 2025-09-25 Nautilus Subsidiary, Inc. Plasmonic particle systems for single-analyte assays
WO2025212338A1 (en) 2024-04-01 2025-10-09 Nautilus Subsidiary, Inc. Nanostructures for modulation of analyte conformation

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8911972B2 (en) * 2009-12-16 2014-12-16 Pacific Biosciences Of California, Inc. Sequencing methods using enzyme conformation
US20110287432A1 (en) * 2010-05-21 2011-11-24 454 Life Science Corporation System and method for tailoring nucleotide concentration to enzymatic efficiencies in dna sequencing technologies
US8890091B2 (en) * 2010-06-03 2014-11-18 Element Six Limited Diamond tools
WO2012097074A2 (en) * 2011-01-11 2012-07-19 The Trustees Of Columbia University In The City Of New York Systems and methods for single-molecule detection using nanotubes
US9164053B2 (en) * 2011-09-26 2015-10-20 The Regents Of The University Of California Electronic device for monitoring single molecule dynamics
US9279154B2 (en) * 2011-12-21 2016-03-08 Illumina, Inc. Apparatus and methods for kinetic analysis and determination of nucleic acid sequences
CA2880869A1 (en) * 2012-08-20 2014-02-27 The Regents Of The University Of California Polynucleotides having bioreversible groups

Also Published As

Publication number Publication date
SG11201704862UA (en) 2017-07-28
AU2015364602A1 (en) 2017-07-06
RU2721965C2 (ru) 2020-05-25
WO2016100637A1 (en) 2016-06-23
EP3234178A4 (en) 2018-07-11
CA2971268A1 (en) 2016-06-23
RU2017125417A3 (cg-RX-API-DMAC7.html) 2019-05-27
CN107109466A (zh) 2017-08-29
CN109517878A (zh) 2019-03-26
RU2017125417A (ru) 2019-01-23
AU2015364602B2 (en) 2021-12-09
JP2018500905A (ja) 2018-01-18
EP3234178A1 (en) 2017-10-25
US20180051316A1 (en) 2018-02-22
WO2016100635A1 (en) 2016-06-23

Similar Documents

Publication Publication Date Title
KR20170091158A (ko) 나노튜브를 이용하는 핵산 중합효소 입체구조적 변화의 검출
JP6595005B2 (ja) ナノポアに隣接するポリメラーゼに固定されたテザーを用いるポリヌクレオチドの配列決定のための組成物、システム、および方法
JP7349972B2 (ja) ポリヌクレオチド配列決定のための組成物及び方法
Branton et al. The potential and challenges of nanopore sequencing
KR102222191B1 (ko) 돌연변이체 기공
CN107002151B (zh) 向跨膜孔输送分析物的方法
EP2742151B1 (en) Polymerase compositions
CN104312914B (zh) 一种基于纳米孔结构的蛋白质分子电子器件
CN106687574A (zh) 使用对纳米颗粒或纳米颗粒附近锚定的系链检测事件的组合物,系统和方法
CN107109472B (zh) 利用互相猝灭的荧光标记物的基于纳米孔的聚合物分析
CN109196116A (zh) 方法
CN112969914A (zh) 用于使用纳米孔装置检测分子的感测组合物、方法和装置
HK40005350A (en) Detection of nucleic acid polymerase conformational changes using a nanotube
Barkova et al. Channel and motor proteins for translocation of nucleic acids in nanopore sequencing
US20240011086A1 (en) Electronic detection of nucleic acid structure
HK40073069B (zh) 使用锚定至邻近纳米孔的聚合酶的系链对多核苷酸测序的组合物、系统和方法
WO2024243214A2 (en) A nanopore-based nucleic acid conformation reader for small molecule (e.g. neurotransmitters and hormones) biosensing and therapeutical compound screening
HK40073069A (en) Compositions, systems, and methods for sequencing polynucleotides using tethers anchored to polymerases adjacent to nanopores
HK40058783B (zh) 使用对纳米颗粒或纳米颗粒附近锚定的系链检测事件的组合物,系统和方法
Ling The potential and challenges of nanopore sequencing

Legal Events

Date Code Title Description
PA0105 International application

Patent event date: 20170713

Patent event code: PA01051R01D

Comment text: International Patent Application

PG1501 Laying open of application
A201 Request for examination
PA0201 Request for examination

Patent event code: PA02012R01D

Patent event date: 20201217

Comment text: Request for Examination of Application

E902 Notification of reason for refusal
PE0902 Notice of grounds for rejection

Comment text: Notification of reason for refusal

Patent event date: 20220822

Patent event code: PE09021S01D

E601 Decision to refuse application
PE0601 Decision on rejection of patent

Patent event date: 20221222

Comment text: Decision to Refuse Application

Patent event code: PE06012S01D

Patent event date: 20220822

Comment text: Notification of reason for refusal

Patent event code: PE06011S01I