KR102516117B1 - 선인장 감염 바이러스 4종(CMMoV, RCNaV, SgCV, TSWV) 다중진단용 특이 프라이머 세트 및 이를 이용한 진단방법 - Google Patents
선인장 감염 바이러스 4종(CMMoV, RCNaV, SgCV, TSWV) 다중진단용 특이 프라이머 세트 및 이를 이용한 진단방법 Download PDFInfo
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Abstract
Description
Genus | Virus | Transmission | 국내보고* | |
Potexvirus | Cactus virus X | CVX | 즙액전염 | 국내보고 |
Opuntia virus X | OpVX | |||
Pitaya virus X | PiVX | |||
Zygocactus virus X | ZyVX | |||
Schlumbergera virus X | SchVX | |||
Tobamovirus | Cactus mild mottle virus | CMMoV | 즙액전염 | 국내보고 |
Rattail cactus necrosis-associated virus | RCNaV | |||
Sammons's opuntia virus | SOV | 국내미보고 | ||
Tobacco mosaic virus | TMV | |||
Orthotospovirus | Tomato spotted wilt virus | TSWV | 총채벌레, 즙액전염 | 국내미보고 |
impatiens necrotic spot virus | INSV | |||
Tomato chlorotic spot wilt virus | TCSV | |||
Carmovirus | Saguaro cactus virus | SgCV | 즙액전염 | 국내보고 |
Calravirus | cactusvirus2 | CV2 | 진딧물 | 국내미보고 |
도 2는 선인장 바이러스 4종에 대한 Multiplex RT-PCR의 구체적인 방법 및 조건을 나타낸 것이다.
도 3은 상기 도 2에서 수행한 Multiplex RT-PCR의 결과이다.
도 4는 선인장 바이러스 4종 다중진단용 프라이머 조합의 진단한계를 확인하기 위해 바이러스 RNA의 농도를 낮춰가며 RT-PCR을 수행한 결과이다.
Primer name | Sequence (5'-3') | Region |
Product
Size(bp) |
Reference
GenBank No. |
CMMoV-F | ACTCTGCTGATGTTCACGAATTAC | 5458-5481 | 809 | EU043335 |
CMMoV-R | AACCGGATCTTCAACCGGTTTG | 6266-6245 | ||
RCNaV-F | GTCSCAAAATGAAGTGGTCGTT | 5720-5741 | 640 | JF729471 |
RCNaV-R | ACACCCACGTTCCATTTAACAG | 6359-6338 | ||
SCV-F | ATGGGGGTAATTGGGTTGTTGT | 2410-2421 | 237 | U72332 |
SCV-R | GGATCCTTCCCATACTTAGCGT | 2646-2625 | ||
SgCV-1F | TTTCAATTCCAACCGGGCCTA | 2121-2141 | 294 | |
SgCV-1R | CCCATTAGTAGTGCTAGGTGC | 2414-2394 | ||
TSWV-6F | GAGATTCTCAGAATTCCCAGT | 2479-2499 | 453 | MF805764 |
TSWV-6R | AGAGCAATCGTGTCAATTTTATTC | 2971-2948 |
Virus | Primer name | Sequence(5'→3') | Product size(bp) |
Primer
Conc.(pmol) |
CMMoV | CMMoV-F (서열번호 1) |
ACTCTGCTGATGTTCACGAATTAC | 809 | 32 |
CMMoV-R (서열번호 2) |
AACCGGATCTTCAACCGGTTTG | |||
RCNaV | RCNaV-F (서열번호 3) |
GTCSCAAAATGAAGTGGTCGTT | 640 | 32 |
RCNaV-R (서열번호 4) |
ACACCCACGTTCCATTTAACAG | |||
SgCV | SgCV-1F (서열번호 5) |
TTTCAATTCCAACCGGGCCTA | 294 | 32 |
SgCV-1R (서열번호 6) |
CCCATTAGTAGTGCTAGGTGC | |||
TSWV | TSWV-6F (서열번호 7) |
GAGATTCTCAGAATTCCCAGT | 453 | 32 |
TSWV-6R (서열번호 8) |
AGAGCAATCGTGTCAATTTTATTC |
대상
바이러스 |
프라이머 |
산물
크기 |
염기서열(5'→3') |
비교대상
/상동성 |
CMMoV | CMMoV-F/ CMMoV-R |
809bp | TCACGAATTACATACTTGAAGAGTCTCTGACATCAAATATTCTCAAAGTCCCACCATTATCATTTGATAATAACTCTGTTTGTCTGGACCAAGATATTATCATGAGTAAGTTCAACAGTGTGTTGAGTACTGTTGCTGTGCCGCGCAATGTTCTTAAATGCACGACAAATTTTGAAAAGAAAAGATTGAGAAAAGGTAAATGGGTAGGTAATAAGAGTGAGTTTGTTTTGAAAGGGGATACAAATGTAGACCCCATGCGTTACAATGGCGGGTTCTTACACCAACGTGAAGCCGAACACATTTGTGTACCGGACTCAGTCGTGGGTCGAACCGGAAAAATTACTCAATTACTTAACCCAGGCGCAACTTCTCATCTTTCAGACGCAGCAAGCGCGGACACAACTTGCTAATGAACTGCAAGCACAATTAAGATATGGTCCACGGAACGATGTCAGATTTCCCACAGACACGTTCCTTGTTAATACTGCAGTGGGGACATTGGCACCTGCGTGGTTTGCTCTGGCTCAAGCTTGTGATACCAAAGATCGAATCTTTGAAGTAGGTGATAATCGAGGTGTAACAAGTACAGAGACAAAGTTAGCAACGCAACGTGTCGATGATGCGACTATAGCTATTCGTAATGCTATTAGAACTTGTGTAAATATATTAGTTAGTGCTGTAGATATCTATGACCGTACTACTTTCGAGGACGCGACGGGCTGGACGTGGCAAACCTTAGGTGCTACACCCAGTACTTCGTAGTCTCGATTTTCTTTCA | EU043335/ 99% |
RCNaV | RCNaV-F/ RCNaV-R |
640bp | AGTGGTCGTTAAAGACGGTACGA-ATGTAACGCCTCATCGTTTAATTGCGAAAGATGCCTTACATCAACGTACAACCGAAAGACT-TCGTTTACCT-GACCAGGTCATGGGTAGATCCCCAGCGTCTGATACAGTTTCTGAGCGATATGCAGACTCAGGCTTTCCAAGCACAGCAGTCTCGCACACAACTTCTGAACGAACTGTCGACGATGGTGGTCTACGGTCCGACCAAATCGGACCGTTTCCCTATAGATACGTACCTTATTAATATCACTAAAGGTGGTCTAAGTGCTTACTGGTTCGGTTTGACTCAGTCTGCGGATACAAAAGATCGCGTTTTCGAAGTTAGTGAAGCACGCGCTGTAACTAACGCTGAGTCTAAGCTGGCAACGCAACGTGTTGACGATGCCACCGTAGCTATAAGAAATGCTATTAAGAGTACTCTTAGTTATTTAATAGCTGGAGAAGATATTTATAGCAGGACGTCATTTGAAGCGGCGCTTGGCTGGATATGGCAGGAAAACCTTCCACCTCCACCTCAAACCGCTGCAAGTGGTAGTTGTACTTAAGGATCTTTCTCAAAGTGTTTTTCCATTCGCTCTGTTAA | JF729471 /99% |
TSWV | TSWV-6F/ TSWV-6R |
453bp | TCCCAGTTTCCTCAACAAGTCTGACCCTGATCAAGCTATCAAGCCTTCTGAAGGTCATGTCAGTGGCTCCAATCCTGTCTGAAGTTTTCTTTATGGTAATTTTACCAAAAGTAAAATCACTTTGCTTAATAACCTTCATTATGCTCTGACGATTCTTCAGGAATGTCAGACATGAAATAATGCTCATCTTCTTGATCTGGTCAAGGTTTTCCAGACAAAAAGTCTTGAAGTTGAATGCTACCAGATTCTGATCTTCCTCAAATTCAAGATCTTTGCCTTGTGTCAACAAAGCAACAATGTTTTCCTTAGTGAGCTTAACCTTAGACATGATGATCGTAGAAGTTGTTATATGCTTTGACCGTATGTAATTCAAGGTGCGAAAGTACAACTCTGTATTCCGCAGTCGTTTCTTAGGGTTTTAATGTGATGATTTGTAAGACTGAGTGTTAAGGTTTGAATAAAATTGACACGAATTGC | MN064724/99% |
SgCV | SgCV-1F/ SgCV-1R |
294bp | TTTCAATTCCCCACCGGGCCTACCATCAGGTCACAGATAGTGCTAGATACAGTTTTTATCTTGCATTTGGCATTTTGCCGGATGTGCAGGAGGCTGTTGAGCATGAACTGATGAAGATCTGTGACATTGCTGGGTTTGGCCCGGCTGGTAATTGTGACAACCCAACTCTCGAATGGACATTCCAGTAGACAAGGACTCAGTGCAGCCAGCTGGGAAGCGAGGGAAAACCAAGGCTAAGGTGGACGTTGCGAAGAATGCAGTGCATAAACAGGCACCTAGACTTACTAATGGG | KY753855 /98% |
Claims (9)
- 서열번호 1 및 서열번호 2으로 표시되는 프라이머 쌍; 서열번호 3 및 서열번호 4으로 표시되는 프라이머 쌍; 및 서열번호 5 및 서열번호 6으로 표시되는 프라이머 쌍을 포함하며,
선인장연한모틀바이러스(Cactus mild mottle virus, CMMoV), 선인장괴사 바이러스(Rattail cactus necrosis-associated virus, RCNaV) 및 사와로선인장바이러스(Saguaro cactus virus, SgCV)의 감염 여부를 동시에 진단하는 것을 특징으로 하는, 선인장 감염 바이러스 다중 진단용 프라이머 세트.
- 제 1항에 있어서,
상기 프라이머 세트는 서열번호 7 및 서열번호 8로 표시되는 프라이머 쌍을 더 포함하며, 선인장연한모틀바이러스(Cactus mild mottle virus, CMMoV), 선인장괴사바이러스(Rattail cactus necrosis-associated virus, RCNaV), 사와로선인장바이러스(Saguaro cactus virus, SgCV) 및 토마토반점위조바이러스(Tomato spotted wilt virus, TSWV)의 감염 여부를 동시에 진단하는 것을 특징으로 하는, 프라이머 세트.
- 삭제
- 삭제
- 제 1항 또는 제 2항 중 어느 한 항에 따른 프라이머 세트를 포함하는, 선인장 감염 바이러스 진단용 조성물.
- 제 1항 또는 제 2항 중 어느 한 항에 따른 프라이머 세트 및 증폭반응을 수행하기 위한 시약을 포함하는 선인장 감염 바이러스 진단용 키트.
- 시료에서 DNA 또는 RNA를 수득하는 단계, 제 1항 또는 제 2항 중 어느 한 항에 따른 프라이머 세트를 이용하여 상기 수득한 DNA 또는 RNA를 증폭하는 단계 및 상기 수득한 산물을 분석하여 바이러스 감염 여부를 판정하는 단계를 포함하는 선인장 감염 바이러스 진단 방법으로서,
상기 방법은 선인장연한모틀바이러스(Cactus mild mottle virus, CMMoV), 선인장괴사바이러스(Rattail cactus necrosis-associated virus, RCNaV) 및 사와로선인장바이러스(Saguaro cactus virus, SgCV)의 감염 여부를 동시에 진단하는 것을 특징으로 하는 선인장 감염 바이러스 진단 방법.
- 삭제
- 제 7항에 있어서, 상기 바이러스 감염 여부를 판정하는 단계는 제 2항의 프라이머 세트를 이용하여, 선인장연한모틀바이러스(Cactus mild mottle virus, CMMoV), 선인장괴사바이러스(Rattail cactus necrosis-associated virus, RCNaV), 사와로선인장바이러스(Saguaro cactus virus, SgCV) 및 토마토반점위조바이러스(Tomato spotted wilt virus, TSWV)의 감염 여부를 동시에 진단하는 것을 특징으로 하는 선인장 감염 바이러스 진단 방법.
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